RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 JPH4Q96JJ6 628 aa21.12■□□□□ 0.97
SHMT2-214ENST00000554604 PRG4Q92954 1404 aaPredicted RBP21.11■□□□□ 0.97
SHMT2-214ENST00000554604 CARMIL1Q5VZK9 1371 aa21.1■□□□□ 0.97
SHMT2-214ENST00000554604 KIAA0586Q9BVV6 1533 aa21.06■□□□□ 0.96
SHMT2-214ENST00000554604 RAPGEF2Q9Y4G8 1499 aa20.95■□□□□ 0.94
SHMT2-214ENST00000554604 IQGAP2Q13576 1575 aa20.93■□□□□ 0.94
SHMT2-214ENST00000554604 CARMIL2Q6F5E8 1435 aa20.88■□□□□ 0.93
SHMT2-214ENST00000554604 NPM1P06748 294 aaKnown RBP eCLIP20.85■□□□□ 0.93
SHMT2-214ENST00000554604 CTTNBP2Q8WZ74 1663 aa20.83■□□□□ 0.93
SHMT2-214ENST00000554604 TTBK1Q5TCY1 1321 aaPredicted RBP20.83■□□□□ 0.93
SHMT2-214ENST00000554604 ADCY10Q96PN6 1610 aa20.82■□□□□ 0.92
SHMT2-214ENST00000554604 PTPRGP23470 1445 aa20.82■□□□□ 0.92
SHMT2-214ENST00000554604 TNIKQ9UKE5 1360 aa20.8■□□□□ 0.92
SHMT2-214ENST00000554604 PRXQ9BXM0 1461 aa20.78■□□□□ 0.92
SHMT2-214ENST00000554604 UGGT2Q9NYU1 1516 aa20.78■□□□□ 0.92
SHMT2-214ENST00000554604 KIF13AQ9H1H9 1805 aa20.76■□□□□ 0.91
SHMT2-214ENST00000554604 DISP1Q96F81 1524 aa20.76■□□□□ 0.91
SHMT2-214ENST00000554604 CSRNP3Q8WYN3 585 aa20.73■□□□□ 0.91
SHMT2-214ENST00000554604 MAPKBP1O60336 1514 aa20.73■□□□□ 0.91
SHMT2-214ENST00000554604 KIAA0556O60303 1618 aa20.72■□□□□ 0.91
SHMT2-214ENST00000554604 EEA1Q15075 1411 aa20.7■□□□□ 0.9
SHMT2-214ENST00000554604 GOLGA3Q08378 1498 aa20.68■□□□□ 0.9
SHMT2-214ENST00000554604 FAM69CQ0P6D2 419 aa20.67■□□□□ 0.9
SHMT2-214ENST00000554604 ABCC10Q5T3U5 1492 aa20.67■□□□□ 0.9
SHMT2-214ENST00000554604 UACAQ9BZF9 1416 aa20.66■□□□□ 0.9
SHMT2-214ENST00000554604 ABCC2Q92887 1545 aa20.66■□□□□ 0.9
SHMT2-214ENST00000554604 FAM9AQ8IZU1 332 aaPredicted RBP20.65■□□□□ 0.9
SHMT2-214ENST00000554604 UHRF1BP1LA0JNW5 1464 aa20.64■□□□□ 0.89
SHMT2-214ENST00000554604 DIP2BQ9P265 1576 aa20.63■□□□□ 0.89
SHMT2-214ENST00000554604 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
SHMT2-214ENST00000554604 TSPOAP1O95153 1857 aa20.58■□□□□ 0.89
SHMT2-214ENST00000554604 PLB1Q6P1J6 1458 aa20.56■□□□□ 0.88
SHMT2-214ENST00000554604 ASXL2Q76L83 1435 aa20.56■□□□□ 0.88
SHMT2-214ENST00000554604 KDM5BQ9UGL1 1544 aa20.55■□□□□ 0.88
SHMT2-214ENST00000554604 ZCCHC11Q5TAX3 1644 aaKnown RBP20.55■□□□□ 0.88
SHMT2-214ENST00000554604 P3H3Q8IVL6 736 aa20.52■□□□□ 0.88
SHMT2-214ENST00000554604 KIF21BO75037 1637 aa20.52■□□□□ 0.88
SHMT2-214ENST00000554604 ABCA8O94911 1581 aa20.5■□□□□ 0.87
SHMT2-214ENST00000554604 SAMD9Q5K651 1589 aa20.48■□□□□ 0.87
SHMT2-214ENST00000554604 RANGAP1P46060 587 aaPredicted RBP20.48■□□□□ 0.87
SHMT2-214ENST00000554604 EHMT2Q96KQ7 1210 aa20.46■□□□□ 0.87
SHMT2-214ENST00000554604 GLI2P10070 1586 aa20.46■□□□□ 0.87
SHMT2-214ENST00000554604 EPRSP07814 1512 aaKnown RBP20.43■□□□□ 0.86
SHMT2-214ENST00000554604 WDR7Q9Y4E6 1490 aa20.42■□□□□ 0.86
SHMT2-214ENST00000554604 KDM6BO15054 1643 aa20.42■□□□□ 0.86
SHMT2-214ENST00000554604 UBTFP17480 764 aaKnown RBP20.4■□□□□ 0.86
SHMT2-214ENST00000554604 ARID3CA6NKF2 412 aa20.38■□□□□ 0.85
SHMT2-214ENST00000554604 PPRC1Q5VV67 1664 aaKnown RBP20.38■□□□□ 0.85
SHMT2-214ENST00000554604 RAPGEF6Q8TEU7 1601 aa20.38■□□□□ 0.85
SHMT2-214ENST00000554604 MAP3K4Q9Y6R4 1608 aa20.38■□□□□ 0.85
SHMT2-214ENST00000554604 EFCAB5A4FU69 1503 aa20.36■□□□□ 0.85
SHMT2-214ENST00000554604 FHOD3Q2V2M9 1422 aa20.36■□□□□ 0.85
SHMT2-214ENST00000554604 KCNH8Q96L42 1107 aa20.35■□□□□ 0.85
SHMT2-214ENST00000554604 ATP10BO94823 1461 aa20.32■□□□□ 0.84
SHMT2-214ENST00000554604 TEX14Q8IWB6 1497 aa20.32■□□□□ 0.84
SHMT2-214ENST00000554604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.31■□□□□ 0.84
SHMT2-214ENST00000554604 HNRNPUL2Q1KMD3 747 aaKnown RBP20.31■□□□□ 0.84
SHMT2-214ENST00000554604 CFAP43Q8NDM7 1665 aa20.31■□□□□ 0.84
SHMT2-214ENST00000554604 AEBP2Q6ZN18 517 aaPredicted RBP20.29■□□□□ 0.84
SHMT2-214ENST00000554604 CD109Q6YHK3 1445 aa20.27■□□□□ 0.83
SHMT2-214ENST00000554604 NUP153P49790 1475 aaKnown RBP20.26■□□□□ 0.83
SHMT2-214ENST00000554604 MAGI3Q5TCQ9 1506 aa20.22■□□□□ 0.83
SHMT2-214ENST00000554604 ARHGAP35Q9NRY4 1499 aa20.19■□□□□ 0.82
SHMT2-214ENST00000554604 ABCA9Q8IUA7 1624 aa20.18■□□□□ 0.82
SHMT2-214ENST00000554604 FMN1Q68DA7 1419 aa20.18■□□□□ 0.82
SHMT2-214ENST00000554604 COL17A1Q9UMD9 1497 aaPredicted RBP20.18■□□□□ 0.82
SHMT2-214ENST00000554604 PLEKHD1A6NEE1 506 aa20.17■□□□□ 0.82
SHMT2-214ENST00000554604 ATP1B4Q9UN42 357 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-214ENST00000554604 HECW1Q76N89 1606 aa20.13■□□□□ 0.81
SHMT2-214ENST00000554604 CDK13Q14004 1512 aaKnown RBP20.12■□□□□ 0.81
SHMT2-214ENST00000554604 PHLDB1Q86UU1 1377 aa20.06■□□□□ 0.8
SHMT2-214ENST00000554604 ARAP3Q8WWN8 1544 aa20.05■□□□□ 0.8
SHMT2-214ENST00000554604 CDK11AQ9UQ88 783 aaPredicted RBP20.04■□□□□ 0.8
SHMT2-214ENST00000554604 NEO1Q92859 1461 aa20.04■□□□□ 0.8
SHMT2-214ENST00000554604 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.03■□□□□ 0.8
SHMT2-214ENST00000554604 LRRIQ1Q96JM4 1722 aa20.02■□□□□ 0.79
SHMT2-214ENST00000554604 CLIP1P30622 1438 aa20.02■□□□□ 0.79
SHMT2-214ENST00000554604 TTC37Q6PGP7 1564 aa20.01■□□□□ 0.79
SHMT2-214ENST00000554604 KDM4FA0A1W2PPD8 638 aa20.01■□□□□ 0.79
SHMT2-214ENST00000554604 CFAP74Q9C0B2 1584 aa20■□□□□ 0.79
SHMT2-214ENST00000554604 PCF11O94913 1555 aaKnown RBP19.99■□□□□ 0.79
SHMT2-214ENST00000554604 CASKIN1Q8WXD9 1431 aa19.97■□□□□ 0.79
SHMT2-214ENST00000554604 FANCAO15360 1455 aa19.97■□□□□ 0.79
SHMT2-214ENST00000554604 RAPGEF3O95398 923 aa19.96■□□□□ 0.79
SHMT2-214ENST00000554604 ADGRL1O94910 1474 aa19.96■□□□□ 0.79
SHMT2-214ENST00000554604 MYO5CQ9NQX4 1742 aa19.95■□□□□ 0.78
SHMT2-214ENST00000554604 KIF14Q15058 1648 aa19.94■□□□□ 0.78
SHMT2-214ENST00000554604 CCDC18Q5T9S5 1454 aa19.94■□□□□ 0.78
SHMT2-214ENST00000554604 TROQ12816 1431 aaPredicted RBP19.93■□□□□ 0.78
SHMT2-214ENST00000554604 AKNAQ7Z591 1439 aa19.93■□□□□ 0.78
SHMT2-214ENST00000554604 FYCO1Q9BQS8 1478 aa19.92■□□□□ 0.78
SHMT2-214ENST00000554604 DENND4BO75064 1496 aaPredicted RBP19.91■□□□□ 0.78
SHMT2-214ENST00000554604 PLCH2O75038 1416 aa19.9■□□□□ 0.78
SHMT2-214ENST00000554604 FRMPD1Q5SYB0 1578 aa19.9■□□□□ 0.78
SHMT2-214ENST00000554604 RICTORQ6R327 1708 aa19.9■□□□□ 0.78
SHMT2-214ENST00000554604 EFCAB2Q5VUJ9 269 aa19.86■□□□□ 0.77
SHMT2-214ENST00000554604 CEP162Q5TB80 1403 aa19.85■□□□□ 0.77
SHMT2-214ENST00000554604 LOC105371045A0A1W2PR82 267 aa19.84■□□□□ 0.77
SHMT2-214ENST00000554604 ARHGAP5Q13017 1502 aa19.84■□□□□ 0.77
SHMT2-214ENST00000554604 SCAPERQ9BY12 1400 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms