RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 TRHP20396 242 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-213ENST00000554600 CARMIL1Q5VZK9 1371 aa18.1■□□□□ 0.49
SHMT2-213ENST00000554600 PRG4Q92954 1404 aaPredicted RBP18.05■□□□□ 0.48
SHMT2-213ENST00000554600 JPH4Q96JJ6 628 aa18.04■□□□□ 0.48
SHMT2-213ENST00000554600 KIAA0586Q9BVV6 1533 aa18.03■□□□□ 0.48
SHMT2-213ENST00000554600 RAPGEF2Q9Y4G8 1499 aa17.99■□□□□ 0.47
SHMT2-213ENST00000554600 IQGAP2Q13576 1575 aa17.96■□□□□ 0.47
SHMT2-213ENST00000554600 CTTNBP2Q8WZ74 1663 aa17.96■□□□□ 0.47
SHMT2-213ENST00000554600 TTBK1Q5TCY1 1321 aaPredicted RBP17.9■□□□□ 0.46
SHMT2-213ENST00000554600 CARMIL2Q6F5E8 1435 aa17.87■□□□□ 0.45
SHMT2-213ENST00000554600 PRXQ9BXM0 1461 aa17.84■□□□□ 0.45
SHMT2-213ENST00000554600 FAM9AQ8IZU1 332 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-213ENST00000554600 CSRNP3Q8WYN3 585 aa17.83■□□□□ 0.44
SHMT2-213ENST00000554600 CHIC1Q5VXU3 224 aa17.82■□□□□ 0.44
SHMT2-213ENST00000554600 ADCY10Q96PN6 1610 aa17.82■□□□□ 0.44
SHMT2-213ENST00000554600 EEA1Q15075 1411 aa17.81■□□□□ 0.44
SHMT2-213ENST00000554600 UGGT2Q9NYU1 1516 aa17.81■□□□□ 0.44
SHMT2-213ENST00000554600 PTPRGP23470 1445 aa17.81■□□□□ 0.44
SHMT2-213ENST00000554600 NPM1P06748 294 aaKnown RBP eCLIP17.8■□□□□ 0.44
SHMT2-213ENST00000554600 TNIKQ9UKE5 1360 aa17.79■□□□□ 0.44
SHMT2-213ENST00000554600 KIAA0556O60303 1618 aa17.79■□□□□ 0.44
SHMT2-213ENST00000554600 DISP1Q96F81 1524 aa17.78■□□□□ 0.44
SHMT2-213ENST00000554600 KIF13AQ9H1H9 1805 aa17.77■□□□□ 0.44
SHMT2-213ENST00000554600 GOLGA3Q08378 1498 aa17.73■□□□□ 0.43
SHMT2-213ENST00000554600 KIF21BO75037 1637 aa17.69■□□□□ 0.42
SHMT2-213ENST00000554600 MAPKBP1O60336 1514 aa17.69■□□□□ 0.42
SHMT2-213ENST00000554600 UACAQ9BZF9 1416 aa17.67■□□□□ 0.42
SHMT2-213ENST00000554600 EHMT2Q96KQ7 1210 aa17.67■□□□□ 0.42
SHMT2-213ENST00000554600 ABCC2Q92887 1545 aa17.67■□□□□ 0.42
SHMT2-213ENST00000554600 RANGAP1P46060 587 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-213ENST00000554600 TSPOAP1O95153 1857 aa17.66■□□□□ 0.42
SHMT2-213ENST00000554600 UHRF1BP1LA0JNW5 1464 aa17.64■□□□□ 0.41
SHMT2-213ENST00000554600 P3H3Q8IVL6 736 aa17.64■□□□□ 0.41
SHMT2-213ENST00000554600 DIP2BQ9P265 1576 aa17.64■□□□□ 0.41
SHMT2-213ENST00000554600 ZCCHC11Q5TAX3 1644 aaKnown RBP17.62■□□□□ 0.41
SHMT2-213ENST00000554600 FAM69CQ0P6D2 419 aa17.62■□□□□ 0.41
SHMT2-213ENST00000554600 ABCC10Q5T3U5 1492 aa17.62■□□□□ 0.41
SHMT2-213ENST00000554600 SAMD9Q5K651 1589 aa17.61■□□□□ 0.41
SHMT2-213ENST00000554600 PLB1Q6P1J6 1458 aa17.6■□□□□ 0.41
SHMT2-213ENST00000554600 UBTFP17480 764 aaKnown RBP17.58■□□□□ 0.4
SHMT2-213ENST00000554600 ABCA8O94911 1581 aa17.57■□□□□ 0.4
SHMT2-213ENST00000554600 KDM5BQ9UGL1 1544 aa17.57■□□□□ 0.4
SHMT2-213ENST00000554600 ASXL2Q76L83 1435 aa17.57■□□□□ 0.4
SHMT2-213ENST00000554600 RAPGEF6Q8TEU7 1601 aa17.51■□□□□ 0.39
SHMT2-213ENST00000554600 ARID3CA6NKF2 412 aa17.51■□□□□ 0.39
SHMT2-213ENST00000554600 FHOD3Q2V2M9 1422 aa17.51■□□□□ 0.39
SHMT2-213ENST00000554600 EFCAB5A4FU69 1503 aa17.5■□□□□ 0.39
SHMT2-213ENST00000554600 GLI2P10070 1586 aa17.48■□□□□ 0.39
SHMT2-213ENST00000554600 WDR7Q9Y4E6 1490 aa17.46■□□□□ 0.39
SHMT2-213ENST00000554600 EPRSP07814 1512 aaKnown RBP17.46■□□□□ 0.39
SHMT2-213ENST00000554600 ILDR1Q86SU0 546 aaPredicted RBP17.44■□□□□ 0.38
SHMT2-213ENST00000554600 PPRC1Q5VV67 1664 aaKnown RBP17.44■□□□□ 0.38
SHMT2-213ENST00000554600 KDM6BO15054 1643 aa17.43■□□□□ 0.38
SHMT2-213ENST00000554600 MAP3K4Q9Y6R4 1608 aa17.43■□□□□ 0.38
SHMT2-213ENST00000554600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-213ENST00000554600 HNRNPUL2Q1KMD3 747 aaKnown RBP17.43■□□□□ 0.38
SHMT2-213ENST00000554600 KCNH8Q96L42 1107 aa17.43■□□□□ 0.38
SHMT2-213ENST00000554600 ATP10BO94823 1461 aa17.41■□□□□ 0.38
SHMT2-213ENST00000554600 CFAP43Q8NDM7 1665 aa17.4■□□□□ 0.38
SHMT2-213ENST00000554600 NUP153P49790 1475 aaKnown RBP17.37■□□□□ 0.37
SHMT2-213ENST00000554600 ARHGAP35Q9NRY4 1499 aa17.37■□□□□ 0.37
SHMT2-213ENST00000554600 ATP1B4Q9UN42 357 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-213ENST00000554600 TEX14Q8IWB6 1497 aa17.35■□□□□ 0.37
SHMT2-213ENST00000554600 FMN1Q68DA7 1419 aa17.33■□□□□ 0.36
SHMT2-213ENST00000554600 HECW1Q76N89 1606 aa17.32■□□□□ 0.36
SHMT2-213ENST00000554600 CD109Q6YHK3 1445 aa17.32■□□□□ 0.36
SHMT2-213ENST00000554600 CDK13Q14004 1512 aaKnown RBP17.3■□□□□ 0.36
SHMT2-213ENST00000554600 ABCA9Q8IUA7 1624 aa17.29■□□□□ 0.36
SHMT2-213ENST00000554600 PLEKHD1A6NEE1 506 aa17.28■□□□□ 0.36
SHMT2-213ENST00000554600 LRRIQ1Q96JM4 1722 aa17.27■□□□□ 0.36
SHMT2-213ENST00000554600 MAGI3Q5TCQ9 1506 aa17.26■□□□□ 0.35
SHMT2-213ENST00000554600 CLIP1P30622 1438 aa17.25■□□□□ 0.35
SHMT2-213ENST00000554600 KDM4FA0A1W2PPD8 638 aa17.24■□□□□ 0.35
SHMT2-213ENST00000554600 PCF11O94913 1555 aaKnown RBP17.23■□□□□ 0.35
SHMT2-213ENST00000554600 COL17A1Q9UMD9 1497 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-213ENST00000554600 TTC37Q6PGP7 1564 aa17.19■□□□□ 0.34
SHMT2-213ENST00000554600 CDK11AQ9UQ88 783 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-213ENST00000554600 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.17■□□□□ 0.34
SHMT2-213ENST00000554600 CASKIN1Q8WXD9 1431 aa17.17■□□□□ 0.34
SHMT2-213ENST00000554600 MYO5CQ9NQX4 1742 aa17.16■□□□□ 0.34
SHMT2-213ENST00000554600 CFAP74Q9C0B2 1584 aa17.15■□□□□ 0.34
SHMT2-213ENST00000554600 KIF14Q15058 1648 aa17.14■□□□□ 0.33
SHMT2-213ENST00000554600 CCDC18Q5T9S5 1454 aa17.14■□□□□ 0.33
SHMT2-213ENST00000554600 FYCO1Q9BQS8 1478 aa17.14■□□□□ 0.33
SHMT2-213ENST00000554600 CEP162Q5TB80 1403 aa17.13■□□□□ 0.33
SHMT2-213ENST00000554600 LOC105371045A0A1W2PR82 267 aa17.13■□□□□ 0.33
SHMT2-213ENST00000554600 NEO1Q92859 1461 aa17.12■□□□□ 0.33
SHMT2-213ENST00000554600 ARAP3Q8WWN8 1544 aa17.12■□□□□ 0.33
SHMT2-213ENST00000554600 PHLDB1Q86UU1 1377 aa17.11■□□□□ 0.33
SHMT2-213ENST00000554600 TROQ12816 1431 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-213ENST00000554600 FANCAO15360 1455 aa17.09■□□□□ 0.33
SHMT2-213ENST00000554600 AKNAQ7Z591 1439 aa17.06■□□□□ 0.32
SHMT2-213ENST00000554600 RAPGEF3O95398 923 aa17.06■□□□□ 0.32
SHMT2-213ENST00000554600 RICTORQ6R327 1708 aa17.06■□□□□ 0.32
SHMT2-213ENST00000554600 CDC42BPBQ9Y5S2 1711 aa17.04■□□□□ 0.32
SHMT2-213ENST00000554600 FRMPD1Q5SYB0 1578 aa17.04■□□□□ 0.32
SHMT2-213ENST00000554600 PLCH2O75038 1416 aa17.04■□□□□ 0.32
SHMT2-213ENST00000554600 ARHGAP5Q13017 1502 aa17.03■□□□□ 0.32
SHMT2-213ENST00000554600 CDC42BPAQ5VT25 1732 aa17.03■□□□□ 0.32
SHMT2-213ENST00000554600 DENND4BO75064 1496 aaPredicted RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms