RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TIAM1Q13009 1591 aa18.01■□□□□ 0.47
SHMT2-207ENST00000553837 P3H3Q8IVL6 736 aa18■□□□□ 0.47
SHMT2-207ENST00000553837 DHX57Q6P158 1386 aaKnown RBP18■□□□□ 0.47
SHMT2-207ENST00000553837 CCNB3Q8WWL7 1395 aa17.99■□□□□ 0.47
SHMT2-207ENST00000553837 WDR97A6NE52 1622 aa17.99■□□□□ 0.47
SHMT2-207ENST00000553837 YTHDC1Q96MU7 727 aaKnown RBP17.98■□□□□ 0.47
SHMT2-207ENST00000553837 MAP3K1Q13233 1512 aa17.98■□□□□ 0.47
SHMT2-207ENST00000553837 CUL7Q14999 1698 aa17.96■□□□□ 0.46
SHMT2-207ENST00000553837 PCF11O94913 1555 aaKnown RBP17.95■□□□□ 0.46
SHMT2-207ENST00000553837 FHOD3Q2V2M9 1422 aa17.95■□□□□ 0.46
SHMT2-207ENST00000553837 LRRC9Q6ZRR7 1453 aa17.94■□□□□ 0.46
SHMT2-207ENST00000553837 TDRD9Q8NDG6 1382 aaKnown RBP17.94■□□□□ 0.46
SHMT2-207ENST00000553837 KIF21AQ7Z4S6 1674 aa17.92■□□□□ 0.46
SHMT2-207ENST00000553837 ABCA5Q8WWZ7 1642 aa17.91■□□□□ 0.46
SHMT2-207ENST00000553837 FHAD1B1AJZ9 1412 aa17.91■□□□□ 0.46
SHMT2-207ENST00000553837 PDS5BQ9NTI5 1447 aa17.91■□□□□ 0.46
SHMT2-207ENST00000553837 ITGAEP38570 1179 aa17.91■□□□□ 0.46
SHMT2-207ENST00000553837 PHLDB1Q86UU1 1377 aa17.91■□□□□ 0.46
SHMT2-207ENST00000553837 CTTNBP2Q8WZ74 1663 aa17.9■□□□□ 0.46
SHMT2-207ENST00000553837 CFAP43Q8NDM7 1665 aa17.9■□□□□ 0.46
SHMT2-207ENST00000553837 MIER1Q8N108 512 aa17.89■□□□□ 0.45
SHMT2-207ENST00000553837 CLSPNQ9HAW4 1339 aa17.88■□□□□ 0.45
SHMT2-207ENST00000553837 EFCAB5A4FU69 1503 aa17.87■□□□□ 0.45
SHMT2-207ENST00000553837 GAPVD1Q14C86 1478 aa17.87■□□□□ 0.45
SHMT2-207ENST00000553837 PRKCSHP14314 528 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-207ENST00000553837 ATP1B4Q9UN42 357 aaPredicted RBP17.85■□□□□ 0.45
SHMT2-207ENST00000553837 CASKIN1Q8WXD9 1431 aa17.83■□□□□ 0.45
SHMT2-207ENST00000553837 FYCO1Q9BQS8 1478 aa17.83■□□□□ 0.45
SHMT2-207ENST00000553837 TARBP1Q13395 1621 aaKnown RBP17.82■□□□□ 0.44
SHMT2-207ENST00000553837 AQRO60306 1485 aaKnown RBP eCLIP17.81■□□□□ 0.444e-7■■■■□ 20.7
SHMT2-207ENST00000553837 RAB3GAP2Q9H2M9 1393 aa17.81■□□□□ 0.44
SHMT2-207ENST00000553837 ERICH6Q7L0X2 663 aa17.79■□□□□ 0.44
SHMT2-207ENST00000553837 SNAPC4Q5SXM2 1469 aa17.79■□□□□ 0.44
SHMT2-207ENST00000553837 SAMD9Q5K651 1589 aa17.78■□□□□ 0.44
SHMT2-207ENST00000553837 FAM50AQ14320 339 aaKnown RBP17.76■□□□□ 0.43
SHMT2-207ENST00000553837 FMN1Q68DA7 1419 aa17.75■□□□□ 0.43
SHMT2-207ENST00000553837 MAPKBP1O60336 1514 aa17.75■□□□□ 0.43
SHMT2-207ENST00000553837 LRRIQ1Q96JM4 1722 aa17.74■□□□□ 0.43
SHMT2-207ENST00000553837 SETD5Q9C0A6 1442 aa17.74■□□□□ 0.43
SHMT2-207ENST00000553837 ANP32EQ9BTT0 268 aa17.7■□□□□ 0.42
SHMT2-207ENST00000553837 PBRM1Q86U86 1689 aa17.7■□□□□ 0.42
SHMT2-207ENST00000553837 GRIN2BQ13224 1484 aa17.69■□□□□ 0.42
SHMT2-207ENST00000553837 MRC2Q9UBG0 1479 aa17.67■□□□□ 0.42
SHMT2-207ENST00000553837 SUPT16HQ9Y5B9 1047 aaKnown RBP17.66■□□□□ 0.42
SHMT2-207ENST00000553837 FGD6Q6ZV73 1430 aa17.65■□□□□ 0.42
SHMT2-207ENST00000553837 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.64■□□□□ 0.41
SHMT2-207ENST00000553837 ADAMTS12P58397 1594 aa17.63■□□□□ 0.41
SHMT2-207ENST00000553837 MTUS2Q5JR59 1369 aa17.63■□□□□ 0.41
SHMT2-207ENST00000553837 ZNF608Q9ULD9 1512 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-207ENST00000553837 ERCC6Q03468 1493 aa17.61■□□□□ 0.41
SHMT2-207ENST00000553837 PTPRKQ15262 1439 aa17.6■□□□□ 0.41
SHMT2-207ENST00000553837 MAGI3Q5TCQ9 1506 aa17.6■□□□□ 0.41
SHMT2-207ENST00000553837 NCOA2Q15596 1464 aa17.6■□□□□ 0.41
SHMT2-207ENST00000553837 SIN3AQ96ST3 1273 aa17.6■□□□□ 0.41
SHMT2-207ENST00000553837 THOC2Q8NI27 1593 aaKnown RBP17.59■□□□□ 0.41
SHMT2-207ENST00000553837 TSHZ2Q9NRE2 1034 aa17.59■□□□□ 0.41
SHMT2-207ENST00000553837 IQGAP2Q13576 1575 aa17.58■□□□□ 0.4
SHMT2-207ENST00000553837 WDR62O43379 1518 aa17.56■□□□□ 0.4
SHMT2-207ENST00000553837 MYOM3Q5VTT5 1437 aa17.55■□□□□ 0.4
SHMT2-207ENST00000553837 EHBP1L1Q8N3D4 1523 aa17.54■□□□□ 0.4
SHMT2-207ENST00000553837 SUPT6HQ7KZ85 1726 aaKnown RBP17.54■□□□□ 0.4
SHMT2-207ENST00000553837 IFT140Q96RY7 1462 aa17.54■□□□□ 0.4
SHMT2-207ENST00000553837 ARHGEF11O15085 1522 aa17.53■□□□□ 0.4
SHMT2-207ENST00000553837 UGGT2Q9NYU1 1516 aa17.53■□□□□ 0.4
SHMT2-207ENST00000553837 HFM1A2PYH4 1435 aa17.49■□□□□ 0.39
SHMT2-207ENST00000553837 CCDC18Q5T9S5 1454 aa17.49■□□□□ 0.39
SHMT2-207ENST00000553837 CDK13Q14004 1512 aaKnown RBP17.49■□□□□ 0.39
SHMT2-207ENST00000553837 HECW1Q76N89 1606 aa17.49■□□□□ 0.39
SHMT2-207ENST00000553837 PTPN23Q9H3S7 1636 aa17.49■□□□□ 0.39
SHMT2-207ENST00000553837 EPRSP07814 1512 aaKnown RBP17.49■□□□□ 0.39
SHMT2-207ENST00000553837 ARID3CA6NKF2 412 aa17.47■□□□□ 0.39
SHMT2-207ENST00000553837 NAIPQ13075 1403 aa17.47■□□□□ 0.39
SHMT2-207ENST00000553837 EIF4G3O43432 1585 aaKnown RBP17.45■□□□□ 0.38
SHMT2-207ENST00000553837 DISP1Q96F81 1524 aa17.44■□□□□ 0.38
SHMT2-207ENST00000553837 KIAA0586Q9BVV6 1533 aa17.43■□□□□ 0.38
SHMT2-207ENST00000553837 TCOF1Q13428 1488 aaKnown RBP17.42■□□□□ 0.38
SHMT2-207ENST00000553837 UACAQ9BZF9 1416 aa17.42■□□□□ 0.38
SHMT2-207ENST00000553837 GRIN2AQ12879 1464 aa17.41■□□□□ 0.38
SHMT2-207ENST00000553837 KIAA0556O60303 1618 aa17.41■□□□□ 0.38
SHMT2-207ENST00000553837 PPP1R15AO75807 674 aaPredicted RBP17.4■□□□□ 0.38
SHMT2-207ENST00000553837 TIMELESSQ9UNS1 1208 aa17.39■□□□□ 0.37
SHMT2-207ENST00000553837 CHIC2Q9UKJ5 165 aa17.38■□□□□ 0.37
SHMT2-207ENST00000553837 RRP7BPQ9NSQ0 103 aa17.38■□□□□ 0.37
SHMT2-207ENST00000553837 NUP153P49790 1475 aaKnown RBP17.36■□□□□ 0.37
SHMT2-207ENST00000553837 KDM6BO15054 1643 aa17.36■□□□□ 0.37
SHMT2-207ENST00000553837 HIRIP3Q9BW71 556 aaPredicted RBP17.34■□□□□ 0.37
SHMT2-207ENST00000553837 CEP170Q5SW79 1584 aa17.34■□□□□ 0.37
SHMT2-207ENST00000553837 DENND4BO75064 1496 aaPredicted RBP17.33■□□□□ 0.37
SHMT2-207ENST00000553837 MIA2Q96PC5 1412 aa17.33■□□□□ 0.36
SHMT2-207ENST00000553837 GCC2Q8IWJ2 1684 aa17.33■□□□□ 0.36
SHMT2-207ENST00000553837 MAGI1Q96QZ7 1491 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-207ENST00000553837 RAPGEF6Q8TEU7 1601 aa17.31■□□□□ 0.36
SHMT2-207ENST00000553837 KCNH8Q96L42 1107 aa17.31■□□□□ 0.36
SHMT2-207ENST00000553837 KDM5BQ9UGL1 1544 aa17.3■□□□□ 0.36
SHMT2-207ENST00000553837 DDX10Q13206 875 aaKnown RBP17.3■□□□□ 0.36
SHMT2-207ENST00000553837 TONSLQ96HA7 1378 aa17.3■□□□□ 0.36
SHMT2-207ENST00000553837 SYNJ2O15056 1496 aa17.29■□□□□ 0.36
SHMT2-207ENST00000553837 CHMP7Q8WUX9 453 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-207ENST00000553837 ZNF644Q9H582 1327 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-207ENST00000553837 AKNAQ7Z591 1439 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms