RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 TRHP20396 242 aaPredicted RBP31.46■■■□□ 2.63
SHMT2-206ENST00000553529 JPH4Q96JJ6 628 aa31.43■■■□□ 2.62
SHMT2-206ENST00000553529 CARMIL1Q5VZK9 1371 aa31.41■■■□□ 2.62
SHMT2-206ENST00000553529 KIAA0586Q9BVV6 1533 aa31.33■■■□□ 2.61
SHMT2-206ENST00000553529 RAPGEF2Q9Y4G8 1499 aa31.16■■■□□ 2.58
SHMT2-206ENST00000553529 IQGAP2Q13576 1575 aa31.16■■■□□ 2.58
SHMT2-206ENST00000553529 TTBK1Q5TCY1 1321 aaPredicted RBP31.15■■■□□ 2.58
SHMT2-206ENST00000553529 ADCY10Q96PN6 1610 aa31.14■■■□□ 2.58
SHMT2-206ENST00000553529 DISP1Q96F81 1524 aa31.03■■■□□ 2.56
SHMT2-206ENST00000553529 KIF13AQ9H1H9 1805 aa31.01■■■□□ 2.56
SHMT2-206ENST00000553529 PRXQ9BXM0 1461 aa30.99■■■□□ 2.55
SHMT2-206ENST00000553529 CTTNBP2Q8WZ74 1663 aa30.97■■■□□ 2.55
SHMT2-206ENST00000553529 PTPRGP23470 1445 aa30.97■■■□□ 2.55
SHMT2-206ENST00000553529 UGGT2Q9NYU1 1516 aa30.94■■■□□ 2.54
SHMT2-206ENST00000553529 TNIKQ9UKE5 1360 aa30.93■■■□□ 2.54
SHMT2-206ENST00000553529 CARMIL2Q6F5E8 1435 aa30.92■■■□□ 2.54
SHMT2-206ENST00000553529 KIAA0556O60303 1618 aa30.92■■■□□ 2.54
SHMT2-206ENST00000553529 MAPKBP1O60336 1514 aa30.87■■■□□ 2.53
SHMT2-206ENST00000553529 FAM9AQ8IZU1 332 aaPredicted RBP30.85■■■□□ 2.53
SHMT2-206ENST00000553529 DIP2BQ9P265 1576 aa30.83■■■□□ 2.53
SHMT2-206ENST00000553529 NPM1P06748 294 aaKnown RBP eCLIP30.82■■■□□ 2.52
SHMT2-206ENST00000553529 ABCC10Q5T3U5 1492 aa30.81■■■□□ 2.52
SHMT2-206ENST00000553529 CSRNP3Q8WYN3 585 aa30.8■■■□□ 2.52
SHMT2-206ENST00000553529 FAM69CQ0P6D2 419 aa30.79■■■□□ 2.52
SHMT2-206ENST00000553529 ABCC2Q92887 1545 aa30.77■■■□□ 2.52
SHMT2-206ENST00000553529 UACAQ9BZF9 1416 aa30.76■■■□□ 2.51
SHMT2-206ENST00000553529 CHIC1Q5VXU3 224 aa30.72■■■□□ 2.51
SHMT2-206ENST00000553529 UHRF1BP1LA0JNW5 1464 aa30.71■■■□□ 2.51
SHMT2-206ENST00000553529 PLB1Q6P1J6 1458 aa30.71■■■□□ 2.51
SHMT2-206ENST00000553529 TSPOAP1O95153 1857 aa30.68■■■□□ 2.5
SHMT2-206ENST00000553529 ASXL2Q76L83 1435 aa30.67■■■□□ 2.5
SHMT2-206ENST00000553529 ZCCHC11Q5TAX3 1644 aaKnown RBP30.67■■■□□ 2.5
SHMT2-206ENST00000553529 P3H3Q8IVL6 736 aa30.67■■■□□ 2.5
SHMT2-206ENST00000553529 EHMT2Q96KQ7 1210 aa30.64■■■□□ 2.5
SHMT2-206ENST00000553529 RANGAP1P46060 587 aaPredicted RBP30.62■■■□□ 2.49
SHMT2-206ENST00000553529 KDM5BQ9UGL1 1544 aa30.62■■■□□ 2.49
SHMT2-206ENST00000553529 EEA1Q15075 1411 aa30.61■■■□□ 2.49
SHMT2-206ENST00000553529 GOLGA3Q08378 1498 aa30.61■■■□□ 2.49
SHMT2-206ENST00000553529 ABCA8O94911 1581 aa30.59■■■□□ 2.49
SHMT2-206ENST00000553529 SAMD9Q5K651 1589 aa30.55■■■□□ 2.48
SHMT2-206ENST00000553529 ARID3CA6NKF2 412 aa30.54■■■□□ 2.48
SHMT2-206ENST00000553529 PPRC1Q5VV67 1664 aaKnown RBP30.53■■■□□ 2.48
SHMT2-206ENST00000553529 KIF21BO75037 1637 aa30.52■■■□□ 2.48
SHMT2-206ENST00000553529 EPRSP07814 1512 aaKnown RBP30.48■■■□□ 2.47
SHMT2-206ENST00000553529 GLI2P10070 1586 aa30.45■■■□□ 2.47
SHMT2-206ENST00000553529 FHOD3Q2V2M9 1422 aa30.43■■■□□ 2.46
SHMT2-206ENST00000553529 KDM6BO15054 1643 aa30.42■■■□□ 2.46
SHMT2-206ENST00000553529 MAP3K4Q9Y6R4 1608 aa30.4■■■□□ 2.46
SHMT2-206ENST00000553529 WDR7Q9Y4E6 1490 aa30.4■■■□□ 2.46
SHMT2-206ENST00000553529 RAPGEF6Q8TEU7 1601 aa30.34■■■□□ 2.45
SHMT2-206ENST00000553529 ATP10BO94823 1461 aa30.33■■■□□ 2.45
SHMT2-206ENST00000553529 KCNH8Q96L42 1107 aa30.32■■■□□ 2.44
SHMT2-206ENST00000553529 COL17A1Q9UMD9 1497 aaPredicted RBP30.3■■■□□ 2.44
SHMT2-206ENST00000553529 NUP153P49790 1475 aaKnown RBP30.26■■■□□ 2.44
SHMT2-206ENST00000553529 UBTFP17480 764 aaKnown RBP30.25■■■□□ 2.43
SHMT2-206ENST00000553529 EFCAB5A4FU69 1503 aa30.2■■■□□ 2.42
SHMT2-206ENST00000553529 CFAP43Q8NDM7 1665 aa30.17■■■□□ 2.42
SHMT2-206ENST00000553529 ARHGAP35Q9NRY4 1499 aa30.16■■■□□ 2.42
SHMT2-206ENST00000553529 CD109Q6YHK3 1445 aa30.15■■■□□ 2.42
SHMT2-206ENST00000553529 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.13■■■□□ 2.41
SHMT2-206ENST00000553529 HNRNPUL2Q1KMD3 747 aaKnown RBP30.13■■■□□ 2.41
SHMT2-206ENST00000553529 TEX14Q8IWB6 1497 aa30.12■■■□□ 2.41
SHMT2-206ENST00000553529 CDK13Q14004 1512 aaKnown RBP30.09■■■□□ 2.41
SHMT2-206ENST00000553529 AEBP2Q6ZN18 517 aaPredicted RBP30.09■■■□□ 2.41
SHMT2-206ENST00000553529 MAGI3Q5TCQ9 1506 aa30.08■■■□□ 2.41
SHMT2-206ENST00000553529 ABCA9Q8IUA7 1624 aa30.06■■■□□ 2.4
SHMT2-206ENST00000553529 KDM4FA0A1W2PPD8 638 aa30■■■□□ 2.39
SHMT2-206ENST00000553529 LRRIQ1Q96JM4 1722 aa29.97■■■□□ 2.39
SHMT2-206ENST00000553529 ATP1B4Q9UN42 357 aaPredicted RBP29.96■■■□□ 2.39
SHMT2-206ENST00000553529 TTC37Q6PGP7 1564 aa29.93■■■□□ 2.38
SHMT2-206ENST00000553529 HECW1Q76N89 1606 aa29.91■■■□□ 2.38
SHMT2-206ENST00000553529 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.91■■■□□ 2.38
SHMT2-206ENST00000553529 FMN1Q68DA7 1419 aa29.88■■■□□ 2.37
SHMT2-206ENST00000553529 PLEKHD1A6NEE1 506 aa29.88■■■□□ 2.37
SHMT2-206ENST00000553529 PCF11O94913 1555 aaKnown RBP29.87■■■□□ 2.37
SHMT2-206ENST00000553529 ADGRL1O94910 1474 aa29.84■■■□□ 2.37
SHMT2-206ENST00000553529 ARAP3Q8WWN8 1544 aa29.83■■■□□ 2.37
SHMT2-206ENST00000553529 FRMPD1Q5SYB0 1578 aa29.82■■■□□ 2.36
SHMT2-206ENST00000553529 KIF14Q15058 1648 aa29.82■■■□□ 2.36
SHMT2-206ENST00000553529 RAPGEF3O95398 923 aa29.81■■■□□ 2.36
SHMT2-206ENST00000553529 NEO1Q92859 1461 aa29.76■■■□□ 2.35
SHMT2-206ENST00000553529 CLIP1P30622 1438 aa29.76■■■□□ 2.35
SHMT2-206ENST00000553529 FANCAO15360 1455 aa29.72■■■□□ 2.35
SHMT2-206ENST00000553529 CASKIN1Q8WXD9 1431 aa29.7■■■□□ 2.34
SHMT2-206ENST00000553529 AKNAQ7Z591 1439 aa29.68■■■□□ 2.34
SHMT2-206ENST00000553529 RICTORQ6R327 1708 aa29.67■■■□□ 2.34
SHMT2-206ENST00000553529 TROQ12816 1431 aaPredicted RBP29.65■■■□□ 2.34
SHMT2-206ENST00000553529 PHLDB1Q86UU1 1377 aa29.63■■■□□ 2.33
SHMT2-206ENST00000553529 MYO5CQ9NQX4 1742 aa29.62■■■□□ 2.33
SHMT2-206ENST00000553529 PLCH2O75038 1416 aa29.62■■■□□ 2.33
SHMT2-206ENST00000553529 CFAP74Q9C0B2 1584 aa29.6■■■□□ 2.33
SHMT2-206ENST00000553529 LOC105371045A0A1W2PR82 267 aa29.6■■■□□ 2.33
SHMT2-206ENST00000553529 DENND4BO75064 1496 aaPredicted RBP29.6■■■□□ 2.33
SHMT2-206ENST00000553529 FYCO1Q9BQS8 1478 aa29.59■■■□□ 2.33
SHMT2-206ENST00000553529 SIGLEC1Q9BZZ2 1709 aa29.57■■■□□ 2.32
SHMT2-206ENST00000553529 CCDC18Q5T9S5 1454 aa29.55■■■□□ 2.32
SHMT2-206ENST00000553529 CEP162Q5TB80 1403 aa29.55■■■□□ 2.32
SHMT2-206ENST00000553529 CDK11AQ9UQ88 783 aaPredicted RBP29.54■■■□□ 2.32
SHMT2-206ENST00000553529 ARHGEF40Q8TER5 1519 aa29.53■■■□□ 2.32
SHMT2-206ENST00000553529 CDC42BPBQ9Y5S2 1711 aa29.53■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms