RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 CUL7Q14999 1698 aa19.49■□□□□ 0.71
SHMT2-205ENST00000553474 ADAMTS12P58397 1594 aa19.49■□□□□ 0.71
SHMT2-205ENST00000553474 TTBK1Q5TCY1 1321 aaPredicted RBP19.47■□□□□ 0.71
SHMT2-205ENST00000553474 CHD1O14646 1710 aa19.46■□□□□ 0.71
SHMT2-205ENST00000553474 MAGI1Q96QZ7 1491 aaPredicted RBP19.46■□□□□ 0.71
SHMT2-205ENST00000553474 IGF1RP08069 1367 aa19.44■□□□□ 0.7
SHMT2-205ENST00000553474 FBLN2P98095 1184 aa19.4■□□□□ 0.7
SHMT2-205ENST00000553474 SYNJ2O15056 1496 aa19.39■□□□□ 0.69
SHMT2-205ENST00000553474 FHAD1B1AJZ9 1412 aa19.39■□□□□ 0.69
SHMT2-205ENST00000553474 ARHGAP35Q9NRY4 1499 aa19.38■□□□□ 0.69
SHMT2-205ENST00000553474 CARMIL1Q5VZK9 1371 aa19.38■□□□□ 0.69
SHMT2-205ENST00000553474 MAP3K1Q13233 1512 aa19.36■□□□□ 0.69
SHMT2-205ENST00000553474 CHMP7Q8WUX9 453 aaPredicted RBP19.34■□□□□ 0.69
SHMT2-205ENST00000553474 GRIN2AQ12879 1464 aa19.33■□□□□ 0.68
SHMT2-205ENST00000553474 CLSPNQ9HAW4 1339 aa19.31■□□□□ 0.68
SHMT2-205ENST00000553474 RRBP1Q9P2E9 1410 aaKnown RBP19.31■□□□□ 0.68
SHMT2-205ENST00000553474 RANGAP1P46060 587 aaPredicted RBP19.29■□□□□ 0.68
SHMT2-205ENST00000553474 HNRNPUL2Q1KMD3 747 aaKnown RBP19.27■□□□□ 0.68
SHMT2-205ENST00000553474 CTTNBP2Q8WZ74 1663 aa19.26■□□□□ 0.67
SHMT2-205ENST00000553474 CEP170Q5SW79 1584 aa19.25■□□□□ 0.67
SHMT2-205ENST00000553474 TIAM1Q13009 1591 aa19.22■□□□□ 0.67
SHMT2-205ENST00000553474 EFCAB5A4FU69 1503 aa19.22■□□□□ 0.67
SHMT2-205ENST00000553474 KANK4Q5T7N3 995 aaPredicted RBP19.19■□□□□ 0.66
SHMT2-205ENST00000553474 DIEXFQ68CQ4 756 aaKnown RBP19.19■□□□□ 0.66
SHMT2-205ENST00000553474 NUP160Q12769 1436 aa19.18■□□□□ 0.66
SHMT2-205ENST00000553474 ZNF316A6NFI3 1004 aaPredicted RBP19.17■□□□□ 0.66
SHMT2-205ENST00000553474 CCNB3Q8WWL7 1395 aa19.16■□□□□ 0.66
SHMT2-205ENST00000553474 CFAP43Q8NDM7 1665 aa19.16■□□□□ 0.66
SHMT2-205ENST00000553474 OSCARQ8IYS5 282 aa19.14■□□□□ 0.66
SHMT2-205ENST00000553474 CLASP1Q7Z460 1538 aa19.14■□□□□ 0.65
SHMT2-205ENST00000553474 IQGAP2Q13576 1575 aa19.14■□□□□ 0.65
SHMT2-205ENST00000553474 LRRC9Q6ZRR7 1453 aa19.11■□□□□ 0.65
SHMT2-205ENST00000553474 FYCO1Q9BQS8 1478 aa19.1■□□□□ 0.65
SHMT2-205ENST00000553474 KIAA0586Q9BVV6 1533 aa19.1■□□□□ 0.65
SHMT2-205ENST00000553474 DHX57Q6P158 1386 aaKnown RBP19.09■□□□□ 0.65
SHMT2-205ENST00000553474 PCF11O94913 1555 aaKnown RBP19.06■□□□□ 0.64
SHMT2-205ENST00000553474 CASKIN1Q8WXD9 1431 aa19.04■□□□□ 0.64
SHMT2-205ENST00000553474 SHROOM2Q13796 1616 aa19.04■□□□□ 0.64
SHMT2-205ENST00000553474 FMN1Q68DA7 1419 aa19.04■□□□□ 0.64
SHMT2-205ENST00000553474 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19■□□□□ 0.63
SHMT2-205ENST00000553474 SAMD9Q5K651 1589 aa18.99■□□□□ 0.63
SHMT2-205ENST00000553474 UGGT2Q9NYU1 1516 aa18.98■□□□□ 0.63
SHMT2-205ENST00000553474 CENPBP07199 599 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-205ENST00000553474 ERCC6L2Q5T890 1561 aa18.97■□□□□ 0.63
SHMT2-205ENST00000553474 PRG4Q92954 1404 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-205ENST00000553474 JPH4Q96JJ6 628 aa18.96■□□□□ 0.63
SHMT2-205ENST00000553474 KIAA0556O60303 1618 aa18.95■□□□□ 0.62
SHMT2-205ENST00000553474 FHOD3Q2V2M9 1422 aa18.95■□□□□ 0.62
SHMT2-205ENST00000553474 PHLDB1Q86UU1 1377 aa18.93■□□□□ 0.62
SHMT2-205ENST00000553474 DISP1Q96F81 1524 aa18.92■□□□□ 0.62
SHMT2-205ENST00000553474 ARHGEF11O15085 1522 aa18.91■□□□□ 0.62
SHMT2-205ENST00000553474 ACIN1Q9UKV3 1341 aaKnown RBP18.91■□□□□ 0.62
SHMT2-205ENST00000553474 RIMBP3CA6NJZ7 1639 aa18.91■□□□□ 0.62
SHMT2-205ENST00000553474 RIMBP3BA6NNM3 1639 aa18.91■□□□□ 0.62
SHMT2-205ENST00000553474 RIMBP3Q9UFD9 1639 aa18.91■□□□□ 0.62
SHMT2-205ENST00000553474 P3H3Q8IVL6 736 aa18.91■□□□□ 0.62
SHMT2-205ENST00000553474 CARMIL2Q6F5E8 1435 aa18.9■□□□□ 0.62
SHMT2-205ENST00000553474 SETD5Q9C0A6 1442 aa18.9■□□□□ 0.62
SHMT2-205ENST00000553474 RAB3GAP2Q9H2M9 1393 aa18.88■□□□□ 0.61
SHMT2-205ENST00000553474 SCAF1Q9H7N4 1312 aaKnown RBP18.86■□□□□ 0.61
SHMT2-205ENST00000553474 MAPKBP1O60336 1514 aa18.81■□□□□ 0.6
SHMT2-205ENST00000553474 CCDC18Q5T9S5 1454 aa18.8■□□□□ 0.6
SHMT2-205ENST00000553474 EHBP1L1Q8N3D4 1523 aa18.8■□□□□ 0.6
SHMT2-205ENST00000553474 FGD6Q6ZV73 1430 aa18.79■□□□□ 0.6
SHMT2-205ENST00000553474 TIMELESSQ9UNS1 1208 aa18.79■□□□□ 0.6
SHMT2-205ENST00000553474 SUPT6HQ7KZ85 1726 aaKnown RBP18.79■□□□□ 0.6
SHMT2-205ENST00000553474 LRRIQ1Q96JM4 1722 aa18.78■□□□□ 0.6
SHMT2-205ENST00000553474 ITGAEP38570 1179 aa18.78■□□□□ 0.6
SHMT2-205ENST00000553474 NEUROD1Q13562 356 aa18.78■□□□□ 0.6
SHMT2-205ENST00000553474 MTUS2Q5JR59 1369 aa18.78■□□□□ 0.6
SHMT2-205ENST00000553474 DNAJC5Q9H3Z4 198 aa18.77■□□□□ 0.6
SHMT2-205ENST00000553474 FAM50AQ14320 339 aaKnown RBP18.76■□□□□ 0.59
SHMT2-205ENST00000553474 ATP1B4Q9UN42 357 aaPredicted RBP18.76■□□□□ 0.59
SHMT2-205ENST00000553474 PTPRGP23470 1445 aa18.75■□□□□ 0.59
SHMT2-205ENST00000553474 HECW1Q76N89 1606 aa18.75■□□□□ 0.59
SHMT2-205ENST00000553474 MYOM3Q5VTT5 1437 aa18.72■□□□□ 0.59
SHMT2-205ENST00000553474 MIER1Q8N108 512 aa18.71■□□□□ 0.59
SHMT2-205ENST00000553474 RAPGEF6Q8TEU7 1601 aa18.71■□□□□ 0.59
SHMT2-205ENST00000553474 NCOA2Q15596 1464 aa18.71■□□□□ 0.59
SHMT2-205ENST00000553474 PLB1Q6P1J6 1458 aa18.7■□□□□ 0.58
SHMT2-205ENST00000553474 CYB5RLQ6IPT4 315 aa18.69■□□□□ 0.58
SHMT2-205ENST00000553474 HFM1A2PYH4 1435 aa18.68■□□□□ 0.58
SHMT2-205ENST00000553474 ADCY10Q96PN6 1610 aa18.67■□□□□ 0.58
SHMT2-205ENST00000553474 ABCA8O94911 1581 aa18.67■□□□□ 0.58
SHMT2-205ENST00000553474 PELP1Q8IZL8 1130 aaKnown RBP18.65■□□□□ 0.58
SHMT2-205ENST00000553474 UACAQ9BZF9 1416 aa18.65■□□□□ 0.58
SHMT2-205ENST00000553474 ABCC2Q92887 1545 aa18.65■□□□□ 0.58
SHMT2-205ENST00000553474 TCOF1Q13428 1488 aaKnown RBP18.63■□□□□ 0.57
SHMT2-205ENST00000553474 ARID3CA6NKF2 412 aa18.63■□□□□ 0.57
SHMT2-205ENST00000553474 PTPN23Q9H3S7 1636 aa18.63■□□□□ 0.57
SHMT2-205ENST00000553474 EPRSP07814 1512 aaKnown RBP18.62■□□□□ 0.57
SHMT2-205ENST00000553474 AKNAQ7Z591 1439 aa18.61■□□□□ 0.57
SHMT2-205ENST00000553474 MIA2Q96PC5 1412 aa18.6■□□□□ 0.57
SHMT2-205ENST00000553474 NUP153P49790 1475 aaKnown RBP18.59■□□□□ 0.57
SHMT2-205ENST00000553474 GTF3C3Q9Y5Q9 886 aa18.58■□□□□ 0.57
SHMT2-205ENST00000553474 ZCCHC11Q5TAX3 1644 aaKnown RBP18.58■□□□□ 0.57
SHMT2-205ENST00000553474 MAGI3Q5TCQ9 1506 aa18.58■□□□□ 0.57
SHMT2-205ENST00000553474 UHRF1BP1LA0JNW5 1464 aa18.58■□□□□ 0.56
SHMT2-205ENST00000553474 CDK13Q14004 1512 aaKnown RBP18.57■□□□□ 0.56
SHMT2-205ENST00000553474 GCC2Q8IWJ2 1684 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 167.8 ms