RNA–Protein interactions for RNA: ENST00000552215.5

CHPT1-208, Transcript of choline phosphotransferase 1, humanhuman

TSL 1 (best)

Gene CHPT1, Length 4,342 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHPT1-208ENST00000552215 TOP2BQ02880 1626 aa12.22□□□□□ -0.45
CHPT1-208ENST00000552215 KIF21AQ7Z4S6 1674 aa12.22□□□□□ -0.45
CHPT1-208ENST00000552215 TRIM52Q96A61 297 aa12.21□□□□□ -0.46
CHPT1-208ENST00000552215 MTUS2Q5JR59 1369 aa12.21□□□□□ -0.46
CHPT1-208ENST00000552215 TRHP20396 242 aaPredicted RBP12.2□□□□□ -0.46
CHPT1-208ENST00000552215 DNMBPQ6XZF7 1577 aa12.2□□□□□ -0.46
CHPT1-208ENST00000552215 SNAPC4Q5SXM2 1469 aa12.19□□□□□ -0.46
CHPT1-208ENST00000552215 CDK11AQ9UQ88 783 aaPredicted RBP12.19□□□□□ -0.46
CHPT1-208ENST00000552215 PLEKHD1A6NEE1 506 aa12.18□□□□□ -0.46
CHPT1-208ENST00000552215 SENP3Q9H4L4 574 aaPredicted RBP12.17□□□□□ -0.46
CHPT1-208ENST00000552215 IFT140Q96RY7 1462 aa12.16□□□□□ -0.46
CHPT1-208ENST00000552215 NEUROD1Q13562 356 aa12.15□□□□□ -0.46
CHPT1-208ENST00000552215 GRIN2BQ13224 1484 aa12.15□□□□□ -0.46
CHPT1-208ENST00000552215 RRP7BPQ9NSQ0 103 aa12.14□□□□□ -0.47
CHPT1-208ENST00000552215 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.11□□□□□ -0.47
CHPT1-208ENST00000552215 AEBP2Q6ZN18 517 aaPredicted RBP12.11□□□□□ -0.47
CHPT1-208ENST00000552215 ABCA10Q8WWZ4 1543 aa12.09□□□□□ -0.47
CHPT1-208ENST00000552215 FHAD1B1AJZ9 1412 aa12.09□□□□□ -0.47
CHPT1-208ENST00000552215 CFDP1Q9UEE9 299 aaPredicted RBP12.07□□□□□ -0.48
CHPT1-208ENST00000552215 CNGB1Q14028 1251 aaPredicted RBP12.07□□□□□ -0.48
CHPT1-208ENST00000552215 PRXQ9BXM0 1461 aa12.06□□□□□ -0.48
CHPT1-208ENST00000552215 PTPRGP23470 1445 aa12.06□□□□□ -0.48
CHPT1-208ENST00000552215 CARMIL2Q6F5E8 1435 aa12.06□□□□□ -0.48
CHPT1-208ENST00000552215 PRG4Q92954 1404 aaPredicted RBP12.05□□□□□ -0.48
CHPT1-208ENST00000552215 ZNF326Q5BKZ1 582 aaKnown RBP12.04□□□□□ -0.48
CHPT1-208ENST00000552215 VPS8Q8N3P4 1428 aa12.04□□□□□ -0.48
CHPT1-208ENST00000552215 ARAP1Q96P48 1450 aa12.02□□□□□ -0.49
CHPT1-208ENST00000552215 POLR3GLQ9BT43 218 aa12□□□□□ -0.49
CHPT1-208ENST00000552215 BIVM-ERCC5R4GMW8 1640 aa11.99□□□□□ -0.49
CHPT1-208ENST00000552215 ZNF644Q9H582 1327 aaPredicted RBP11.99□□□□□ -0.49
CHPT1-208ENST00000552215 TSPY4P0CV99 314 aa11.98□□□□□ -0.49
CHPT1-208ENST00000552215 TSPY10P0CW01 314 aa11.98□□□□□ -0.49
CHPT1-208ENST00000552215 HNRNPMP52272 730 aaKnown RBP eCLIP11.98□□□□□ -0.499e-7■■■■■ 28.4
CHPT1-208ENST00000552215 MLECQ14165 292 aa11.98□□□□□ -0.49
CHPT1-208ENST00000552215 ARHGAP35Q9NRY4 1499 aa11.98□□□□□ -0.49
CHPT1-208ENST00000552215 GRIN2AQ12879 1464 aa11.96□□□□□ -0.5
CHPT1-208ENST00000552215 WDR62O43379 1518 aa11.95□□□□□ -0.5
CHPT1-208ENST00000552215 KIF21BO75037 1637 aa11.95□□□□□ -0.5
CHPT1-208ENST00000552215 SYNJ2O15056 1496 aa11.95□□□□□ -0.5
CHPT1-208ENST00000552215 CCNB3Q8WWL7 1395 aa11.94□□□□□ -0.5
CHPT1-208ENST00000552215 FMN1Q68DA7 1419 aa11.94□□□□□ -0.5
CHPT1-208ENST00000552215 CHGAP10645 457 aaKnown RBP11.94□□□□□ -0.5
CHPT1-208ENST00000552215 FAM69CQ0P6D2 419 aa11.93□□□□□ -0.5
CHPT1-208ENST00000552215 FOXD1Q16676 465 aa11.93□□□□□ -0.5
CHPT1-208ENST00000552215 PRDM2Q13029 1718 aa11.92□□□□□ -0.5
CHPT1-208ENST00000552215 ARID4BQ4LE39 1312 aaPredicted RBP11.92□□□□□ -0.5
CHPT1-208ENST00000552215 EIF4G3O43432 1585 aaKnown RBP11.92□□□□□ -0.5
CHPT1-208ENST00000552215 HRCP23327 699 aa11.91□□□□□ -0.5
CHPT1-208ENST00000552215 PLB1Q6P1J6 1458 aa11.91□□□□□ -0.5
CHPT1-208ENST00000552215 ERICH3Q5RHP9 1530 aa11.88□□□□□ -0.51
CHPT1-208ENST00000552215 KIAA0586Q9BVV6 1533 aa11.87□□□□□ -0.51
CHPT1-208ENST00000552215 MAGI1Q96QZ7 1491 aaPredicted RBP11.87□□□□□ -0.51
CHPT1-208ENST00000552215 HIRIP3Q9BW71 556 aaPredicted RBP11.87□□□□□ -0.51
CHPT1-208ENST00000552215 GGT6Q6P531 493 aa11.86□□□□□ -0.51
CHPT1-208ENST00000552215 KDM2AQ9Y2K7 1162 aa11.86□□□□□ -0.51
CHPT1-208ENST00000552215 SIN3AQ96ST3 1273 aa11.85□□□□□ -0.51
CHPT1-208ENST00000552215 THOC2Q8NI27 1593 aaKnown RBP11.85□□□□□ -0.51
CHPT1-208ENST00000552215 TARBP1Q13395 1621 aaKnown RBP11.85□□□□□ -0.51
CHPT1-208ENST00000552215 CDK13Q14004 1512 aaKnown RBP11.85□□□□□ -0.51
CHPT1-208ENST00000552215 RGL3Q3MIN7 710 aa11.85□□□□□ -0.51
CHPT1-208ENST00000552215 ESF1Q9H501 851 aaKnown RBP11.85□□□□□ -0.51
CHPT1-208ENST00000552215 SLC4A1APQ9BWU0 796 aaKnown RBP11.84□□□□□ -0.51
CHPT1-208ENST00000552215 AFAP1Q8N556 730 aa11.84□□□□□ -0.51
CHPT1-208ENST00000552215 BCANQ96GW7 911 aa11.84□□□□□ -0.51
CHPT1-208ENST00000552215 PHLDB1Q86UU1 1377 aa11.83□□□□□ -0.52
CHPT1-208ENST00000552215 IQGAP2Q13576 1575 aa11.82□□□□□ -0.52
CHPT1-208ENST00000552215 EFCAB2Q5VUJ9 269 aa11.82□□□□□ -0.52
CHPT1-208ENST00000552215 RAPGEF3O95398 923 aa11.8□□□□□ -0.52
CHPT1-208ENST00000552215 ZEB1P37275 1124 aaPredicted RBP11.79□□□□□ -0.52
CHPT1-208ENST00000552215 ADAMTS12P58397 1594 aa11.77□□□□□ -0.52
CHPT1-208ENST00000552215 STAG3Q9UJ98 1225 aa11.77□□□□□ -0.53
CHPT1-208ENST00000552215 CUL7Q14999 1698 aa11.77□□□□□ -0.53
CHPT1-208ENST00000552215 ABCA5Q8WWZ7 1642 aa11.76□□□□□ -0.53
CHPT1-208ENST00000552215 KIF3BO15066 747 aa11.76□□□□□ -0.53
CHPT1-208ENST00000552215 CASKIN1Q8WXD9 1431 aa11.75□□□□□ -0.53
CHPT1-208ENST00000552215 UACAQ9BZF9 1416 aa11.74□□□□□ -0.53
CHPT1-208ENST00000552215 YTHDC1Q96MU7 727 aaKnown RBP11.74□□□□□ -0.53
CHPT1-208ENST00000552215 PBRM1Q86U86 1689 aa11.73□□□□□ -0.53
CHPT1-208ENST00000552215 NUTM2DQ5VT03 806 aaPredicted RBP11.73□□□□□ -0.53
CHPT1-208ENST00000552215 LRRC9Q6ZRR7 1453 aa11.73□□□□□ -0.53
CHPT1-208ENST00000552215 CEP170Q5SW79 1584 aa11.72□□□□□ -0.53
CHPT1-208ENST00000552215 CCDC18Q5T9S5 1454 aa11.72□□□□□ -0.53
CHPT1-208ENST00000552215 SPAG9O60271 1321 aaKnown RBP11.72□□□□□ -0.53
CHPT1-208ENST00000552215 PCF11O94913 1555 aaKnown RBP11.71□□□□□ -0.53
CHPT1-208ENST00000552215 ERCC6L2Q5T890 1561 aa11.71□□□□□ -0.54
CHPT1-208ENST00000552215 EPRSP07814 1512 aaKnown RBP11.7□□□□□ -0.54
CHPT1-208ENST00000552215 NCOA2Q15596 1464 aa11.7□□□□□ -0.54
CHPT1-208ENST00000552215 RAB3GAP2Q9H2M9 1393 aa11.69□□□□□ -0.54
CHPT1-208ENST00000552215 ARHGEF11O15085 1522 aa11.69□□□□□ -0.54
CHPT1-208ENST00000552215 NUP160Q12769 1436 aa11.69□□□□□ -0.54
CHPT1-208ENST00000552215 PKD2Q13563 968 aa11.69□□□□□ -0.54
CHPT1-208ENST00000552215 DISP1Q96F81 1524 aa11.68□□□□□ -0.54
CHPT1-208ENST00000552215 PLEKHG5O94827 1062 aa11.67□□□□□ -0.54
CHPT1-208ENST00000552215 NUP155O75694 1391 aa11.66□□□□□ -0.54
CHPT1-208ENST00000552215 TONSLQ96HA7 1378 aa11.65□□□□□ -0.54
CHPT1-208ENST00000552215 ATP10BO94823 1461 aa11.65□□□□□ -0.54
CHPT1-208ENST00000552215 FYCO1Q9BQS8 1478 aa11.65□□□□□ -0.54
CHPT1-208ENST00000552215 EFCAB5A4FU69 1503 aa11.65□□□□□ -0.54
CHPT1-208ENST00000552215 FGD6Q6ZV73 1430 aa11.64□□□□□ -0.55
CHPT1-208ENST00000552215 CHD1O14646 1710 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms