RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 RUSC2Q8N2Y8 1516 aa23.12■■□□□ 1.29
CPSF6-204ENST00000547486 CARMIL1Q5VZK9 1371 aa23.09■■□□□ 1.29
CPSF6-204ENST00000547486 KIAA0586Q9BVV6 1533 aa23.08■■□□□ 1.29
CPSF6-204ENST00000547486 CUL7Q14999 1698 aa23.05■■□□□ 1.28
CPSF6-204ENST00000547486 NPM1P06748 294 aaKnown RBP eCLIP22.92■■□□□ 1.26
CPSF6-204ENST00000547486 TTBK1Q5TCY1 1321 aaPredicted RBP22.88■■□□□ 1.25
CPSF6-204ENST00000547486 PTPRGP23470 1445 aa22.88■■□□□ 1.25
CPSF6-204ENST00000547486 ADCY10Q96PN6 1610 aa22.87■■□□□ 1.25
CPSF6-204ENST00000547486 RAPGEF2Q9Y4G8 1499 aa22.86■■□□□ 1.25
CPSF6-204ENST00000547486 FAM69CQ0P6D2 419 aa22.85■■□□□ 1.25
CPSF6-204ENST00000547486 TNIKQ9UKE5 1360 aa22.83■■□□□ 1.25
CPSF6-204ENST00000547486 CARMIL2Q6F5E8 1435 aa22.82■■□□□ 1.24
CPSF6-204ENST00000547486 IQGAP2Q13576 1575 aa22.82■■□□□ 1.24
CPSF6-204ENST00000547486 ABCC10Q5T3U5 1492 aa22.81■■□□□ 1.24
CPSF6-204ENST00000547486 MAPKBP1O60336 1514 aa22.8■■□□□ 1.24
CPSF6-204ENST00000547486 KIF13AQ9H1H9 1805 aa22.79■■□□□ 1.24
CPSF6-204ENST00000547486 DISP1Q96F81 1524 aa22.78■■□□□ 1.24
CPSF6-204ENST00000547486 UGGT2Q9NYU1 1516 aa22.72■■□□□ 1.23
CPSF6-204ENST00000547486 DIP2BQ9P265 1576 aa22.7■■□□□ 1.22
CPSF6-204ENST00000547486 ABCC2Q92887 1545 aa22.69■■□□□ 1.22
CPSF6-204ENST00000547486 PRXQ9BXM0 1461 aa22.68■■□□□ 1.22
CPSF6-204ENST00000547486 UACAQ9BZF9 1416 aa22.68■■□□□ 1.22
CPSF6-204ENST00000547486 UHRF1BP1LA0JNW5 1464 aa22.66■■□□□ 1.22
CPSF6-204ENST00000547486 ASXL2Q76L83 1435 aa22.62■■□□□ 1.21
CPSF6-204ENST00000547486 KIAA0556O60303 1618 aa22.61■■□□□ 1.21
CPSF6-204ENST00000547486 AEBP2Q6ZN18 517 aaPredicted RBP22.6■■□□□ 1.21
CPSF6-204ENST00000547486 CSRNP3Q8WYN3 585 aa22.6■■□□□ 1.21
CPSF6-204ENST00000547486 PLB1Q6P1J6 1458 aa22.58■■□□□ 1.2
CPSF6-204ENST00000547486 KDM5BQ9UGL1 1544 aa22.57■■□□□ 1.2
CPSF6-204ENST00000547486 CTTNBP2Q8WZ74 1663 aa22.53■■□□□ 1.2
CPSF6-204ENST00000547486 GOLGA3Q08378 1498 aa22.53■■□□□ 1.2
CPSF6-204ENST00000547486 TSPOAP1O95153 1857 aa22.51■■□□□ 1.19
CPSF6-204ENST00000547486 P3H3Q8IVL6 736 aa22.49■■□□□ 1.19
CPSF6-204ENST00000547486 GLI2P10070 1586 aa22.49■■□□□ 1.19
CPSF6-204ENST00000547486 EPRSP07814 1512 aaKnown RBP22.47■■□□□ 1.19
CPSF6-204ENST00000547486 ZCCHC11Q5TAX3 1644 aaKnown RBP22.46■■□□□ 1.19
CPSF6-204ENST00000547486 KDM6BO15054 1643 aa22.46■■□□□ 1.19
CPSF6-204ENST00000547486 FAM9AQ8IZU1 332 aaPredicted RBP22.45■■□□□ 1.18
CPSF6-204ENST00000547486 ABCA8O94911 1581 aa22.43■■□□□ 1.18
CPSF6-204ENST00000547486 PPRC1Q5VV67 1664 aaKnown RBP22.41■■□□□ 1.18
CPSF6-204ENST00000547486 EEA1Q15075 1411 aa22.4■■□□□ 1.18
CPSF6-204ENST00000547486 KCNH8Q96L42 1107 aa22.39■■□□□ 1.17
CPSF6-204ENST00000547486 WDR7Q9Y4E6 1490 aa22.39■■□□□ 1.17
CPSF6-204ENST00000547486 COL17A1Q9UMD9 1497 aaPredicted RBP22.37■■□□□ 1.17
CPSF6-204ENST00000547486 ARID3CA6NKF2 412 aa22.37■■□□□ 1.17
CPSF6-204ENST00000547486 RANGAP1P46060 587 aaPredicted RBP22.36■■□□□ 1.17
CPSF6-204ENST00000547486 MAP3K4Q9Y6R4 1608 aa22.35■■□□□ 1.17
CPSF6-204ENST00000547486 KDM4FA0A1W2PPD8 638 aa22.34■■□□□ 1.17
CPSF6-204ENST00000547486 CHIC1Q5VXU3 224 aa22.33■■□□□ 1.17
CPSF6-204ENST00000547486 ATP10BO94823 1461 aa22.31■■□□□ 1.16
CPSF6-204ENST00000547486 SAMD9Q5K651 1589 aa22.3■■□□□ 1.16
CPSF6-204ENST00000547486 TEX14Q8IWB6 1497 aa22.28■■□□□ 1.16
CPSF6-204ENST00000547486 CD109Q6YHK3 1445 aa22.28■■□□□ 1.16
CPSF6-204ENST00000547486 FHOD3Q2V2M9 1422 aa22.23■■□□□ 1.15
CPSF6-204ENST00000547486 EHMT2Q96KQ7 1210 aa22.23■■□□□ 1.15
CPSF6-204ENST00000547486 MAGI3Q5TCQ9 1506 aa22.22■■□□□ 1.15
CPSF6-204ENST00000547486 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.2■■□□□ 1.14
CPSF6-204ENST00000547486 HNRNPUL2Q1KMD3 747 aaKnown RBP22.2■■□□□ 1.14
CPSF6-204ENST00000547486 KIF21BO75037 1637 aa22.2■■□□□ 1.14
CPSF6-204ENST00000547486 RAPGEF6Q8TEU7 1601 aa22.18■■□□□ 1.14
CPSF6-204ENST00000547486 NUP153P49790 1475 aaKnown RBP22.17■■□□□ 1.14
CPSF6-204ENST00000547486 CFAP43Q8NDM7 1665 aa22.17■■□□□ 1.14
CPSF6-204ENST00000547486 UBTFP17480 764 aaKnown RBP22.15■■□□□ 1.14
CPSF6-204ENST00000547486 EFCAB5A4FU69 1503 aa22.09■■□□□ 1.13
CPSF6-204ENST00000547486 ADGRL1O94910 1474 aa22.09■■□□□ 1.13
CPSF6-204ENST00000547486 PLEKHD1A6NEE1 506 aa22.08■■□□□ 1.13
CPSF6-204ENST00000547486 ABCA9Q8IUA7 1624 aa22.07■■□□□ 1.12
CPSF6-204ENST00000547486 ARAP3Q8WWN8 1544 aa22.06■■□□□ 1.12
CPSF6-204ENST00000547486 RAPGEF3O95398 923 aa22.02■■□□□ 1.12
CPSF6-204ENST00000547486 PHLDB1Q86UU1 1377 aa22.01■■□□□ 1.11
CPSF6-204ENST00000547486 ARHGAP35Q9NRY4 1499 aa22■■□□□ 1.11
CPSF6-204ENST00000547486 ATP1B4Q9UN42 357 aaPredicted RBP21.98■■□□□ 1.11
CPSF6-204ENST00000547486 NEO1Q92859 1461 aa21.97■■□□□ 1.11
CPSF6-204ENST00000547486 CDK13Q14004 1512 aaKnown RBP21.96■■□□□ 1.11
CPSF6-204ENST00000547486 FMN1Q68DA7 1419 aa21.93■■□□□ 1.1
CPSF6-204ENST00000547486 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.92■■□□□ 1.1
CPSF6-204ENST00000547486 AKNAQ7Z591 1439 aa21.89■■□□□ 1.09
CPSF6-204ENST00000547486 FANCAO15360 1455 aa21.87■■□□□ 1.09
CPSF6-204ENST00000547486 FRMPD1Q5SYB0 1578 aa21.86■■□□□ 1.09
CPSF6-204ENST00000547486 TTC37Q6PGP7 1564 aa21.86■■□□□ 1.09
CPSF6-204ENST00000547486 DENND4BO75064 1496 aaPredicted RBP21.83■■□□□ 1.09
CPSF6-204ENST00000547486 CDK11AQ9UQ88 783 aaPredicted RBP21.83■■□□□ 1.09
CPSF6-204ENST00000547486 HECW1Q76N89 1606 aa21.83■■□□□ 1.08
CPSF6-204ENST00000547486 PLCH2O75038 1416 aa21.82■■□□□ 1.08
CPSF6-204ENST00000547486 ARID4BQ4LE39 1312 aaPredicted RBP21.78■■□□□ 1.08
CPSF6-204ENST00000547486 TROQ12816 1431 aaPredicted RBP21.76■■□□□ 1.07
CPSF6-204ENST00000547486 EFCAB2Q5VUJ9 269 aa21.76■■□□□ 1.07
CPSF6-204ENST00000547486 SCAPERQ9BY12 1400 aa21.76■■□□□ 1.07
CPSF6-204ENST00000547486 RICTORQ6R327 1708 aa21.75■■□□□ 1.07
CPSF6-204ENST00000547486 CFAP74Q9C0B2 1584 aa21.74■■□□□ 1.07
CPSF6-204ENST00000547486 CASKIN1Q8WXD9 1431 aa21.73■■□□□ 1.07
CPSF6-204ENST00000547486 KIF14Q15058 1648 aa21.73■■□□□ 1.07
CPSF6-204ENST00000547486 YEATS2Q9ULM3 1422 aa21.72■■□□□ 1.07
CPSF6-204ENST00000547486 LRRIQ1Q96JM4 1722 aa21.72■■□□□ 1.07
CPSF6-204ENST00000547486 HECW2Q9P2P5 1572 aa21.71■■□□□ 1.07
CPSF6-204ENST00000547486 ADAMTSL3P82987 1691 aa21.71■■□□□ 1.07
CPSF6-204ENST00000547486 CLIP1P30622 1438 aa21.7■■□□□ 1.06
CPSF6-204ENST00000547486 PTPRMP28827 1452 aa21.7■■□□□ 1.06
CPSF6-204ENST00000547486 POGZQ7Z3K3 1410 aa21.69■■□□□ 1.06
CPSF6-204ENST00000547486 ARHGEF40Q8TER5 1519 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms