RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 EFCAB5A4FU69 1503 aa12.58□□□□□ -0.4
TDP1-204ENST00000545686 FGD5Q6ZNL6 1462 aa12.58□□□□□ -0.4
TDP1-204ENST00000545686 CARMIL1Q5VZK9 1371 aa12.57□□□□□ -0.4
TDP1-204ENST00000545686 CTTNBP2Q8WZ74 1663 aa12.57□□□□□ -0.4
TDP1-204ENST00000545686 WDR97A6NE52 1622 aa12.56□□□□□ -0.4
TDP1-204ENST00000545686 FYCO1Q9BQS8 1478 aa12.56□□□□□ -0.4
TDP1-204ENST00000545686 TIMELESSQ9UNS1 1208 aa12.56□□□□□ -0.4
TDP1-204ENST00000545686 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.56□□□□□ -0.4
TDP1-204ENST00000545686 CC2D2AQ9P2K1 1620 aa12.56□□□□□ -0.4
TDP1-204ENST00000545686 AQRO60306 1485 aaKnown RBP eCLIP12.55□□□□□ -0.42e-7■■■■□ 20.2
TDP1-204ENST00000545686 CUL7Q14999 1698 aa12.55□□□□□ -0.4
TDP1-204ENST00000545686 PHLDB1Q86UU1 1377 aa12.54□□□□□ -0.4
TDP1-204ENST00000545686 CADPSQ9ULU8 1353 aa12.54□□□□□ -0.4
TDP1-204ENST00000545686 ITGAEP38570 1179 aa12.51□□□□□ -0.41
TDP1-204ENST00000545686 DNMBPQ6XZF7 1577 aa12.5□□□□□ -0.41
TDP1-204ENST00000545686 CASKIN1Q8WXD9 1431 aa12.5□□□□□ -0.41
TDP1-204ENST00000545686 ABCA10Q8WWZ4 1543 aa12.48□□□□□ -0.41
TDP1-204ENST00000545686 TSHZ2Q9NRE2 1034 aa12.47□□□□□ -0.41
TDP1-204ENST00000545686 KIF21AQ7Z4S6 1674 aa12.45□□□□□ -0.42
TDP1-204ENST00000545686 CCER2I3L3R5 266 aa12.44□□□□□ -0.42
TDP1-204ENST00000545686 PPP1R15AO75807 674 aaPredicted RBP12.44□□□□□ -0.42
TDP1-204ENST00000545686 THOC2Q8NI27 1593 aaKnown RBP12.44□□□□□ -0.42
TDP1-204ENST00000545686 FANCD2Q9BXW9 1451 aa12.44□□□□□ -0.42
TDP1-204ENST00000545686 FAM50AQ14320 339 aaKnown RBP12.43□□□□□ -0.42
TDP1-204ENST00000545686 FHOD3Q2V2M9 1422 aa12.43□□□□□ -0.42
TDP1-204ENST00000545686 FMN1Q68DA7 1419 aa12.43□□□□□ -0.42
TDP1-204ENST00000545686 SAMD9Q5K651 1589 aa12.42□□□□□ -0.42
TDP1-204ENST00000545686 FGD6Q6ZV73 1430 aa12.42□□□□□ -0.42
TDP1-204ENST00000545686 PTPN23Q9H3S7 1636 aa12.42□□□□□ -0.42
TDP1-204ENST00000545686 LRRIQ1Q96JM4 1722 aa12.42□□□□□ -0.42
TDP1-204ENST00000545686 SNAPC4Q5SXM2 1469 aa12.42□□□□□ -0.42
TDP1-204ENST00000545686 KCNH8Q96L42 1107 aa12.41□□□□□ -0.42
TDP1-204ENST00000545686 CCDC18Q5T9S5 1454 aa12.41□□□□□ -0.42
TDP1-204ENST00000545686 SIN3AQ96ST3 1273 aa12.4□□□□□ -0.42
TDP1-204ENST00000545686 TOPBP1Q92547 1522 aa12.4□□□□□ -0.42
TDP1-204ENST00000545686 POLA1P09884 1462 aaPredicted RBP12.4□□□□□ -0.42
TDP1-204ENST00000545686 DDX10Q13206 875 aaKnown RBP12.4□□□□□ -0.42
TDP1-204ENST00000545686 HFM1A2PYH4 1435 aa12.4□□□□□ -0.42
TDP1-204ENST00000545686 SUPT6HQ7KZ85 1726 aaKnown RBP12.4□□□□□ -0.42
TDP1-204ENST00000545686 UACAQ9BZF9 1416 aa12.39□□□□□ -0.43
TDP1-204ENST00000545686 GCC2Q8IWJ2 1684 aa12.37□□□□□ -0.43
TDP1-204ENST00000545686 EHBP1L1Q8N3D4 1523 aa12.37□□□□□ -0.43
TDP1-204ENST00000545686 ABCA5Q8WWZ7 1642 aa12.36□□□□□ -0.43
TDP1-204ENST00000545686 TONSLQ96HA7 1378 aa12.36□□□□□ -0.43
TDP1-204ENST00000545686 RAD54L2Q9Y4B4 1467 aa12.36□□□□□ -0.43
TDP1-204ENST00000545686 ANP32CO43423 234 aa12.35□□□□□ -0.43
TDP1-204ENST00000545686 HECW1Q76N89 1606 aa12.35□□□□□ -0.43
TDP1-204ENST00000545686 ANP32EQ9BTT0 268 aa12.35□□□□□ -0.43
TDP1-204ENST00000545686 NEFLP07196 543 aa12.34□□□□□ -0.43
TDP1-204ENST00000545686 GRIN2BQ13224 1484 aa12.34□□□□□ -0.43
TDP1-204ENST00000545686 MYOM3Q5VTT5 1437 aa12.33□□□□□ -0.43
TDP1-204ENST00000545686 FKBP8Q14318 412 aa12.33□□□□□ -0.44
TDP1-204ENST00000545686 KDM5BQ9UGL1 1544 aa12.33□□□□□ -0.44
TDP1-204ENST00000545686 MTUS2Q5JR59 1369 aa12.32□□□□□ -0.44
TDP1-204ENST00000545686 ARHGEF11O15085 1522 aa12.32□□□□□ -0.44
TDP1-204ENST00000545686 NCOA2Q15596 1464 aa12.32□□□□□ -0.44
TDP1-204ENST00000545686 NAIPQ13075 1403 aa12.32□□□□□ -0.44
TDP1-204ENST00000545686 UGGT2Q9NYU1 1516 aa12.31□□□□□ -0.44
TDP1-204ENST00000545686 P3H3Q8IVL6 736 aa12.31□□□□□ -0.44
TDP1-204ENST00000545686 LAMC3Q9Y6N6 1575 aa12.31□□□□□ -0.44
TDP1-204ENST00000545686 PTPRKQ15262 1439 aa12.3□□□□□ -0.44
TDP1-204ENST00000545686 AKNAQ7Z591 1439 aa12.3□□□□□ -0.44
TDP1-204ENST00000545686 ATP1B4Q9UN42 357 aaPredicted RBP12.29□□□□□ -0.44
TDP1-204ENST00000545686 TCOF1Q13428 1488 aaKnown RBP12.29□□□□□ -0.44
TDP1-204ENST00000545686 POLR1AO95602 1720 aaPredicted RBP12.28□□□□□ -0.44
TDP1-204ENST00000545686 BCANQ96GW7 911 aa12.27□□□□□ -0.45
TDP1-204ENST00000545686 URB2Q14146 1524 aaKnown RBP12.25□□□□□ -0.45
TDP1-204ENST00000545686 GAPVD1Q14C86 1478 aa12.24□□□□□ -0.45
TDP1-204ENST00000545686 TRIM52Q96A61 297 aa12.23□□□□□ -0.45
TDP1-204ENST00000545686 HIRIP3Q9BW71 556 aaPredicted RBP12.22□□□□□ -0.45
TDP1-204ENST00000545686 MAGI3Q5TCQ9 1506 aa12.22□□□□□ -0.45
TDP1-204ENST00000545686 NESP48681 1621 aa12.22□□□□□ -0.45
TDP1-204ENST00000545686 PBRM1Q86U86 1689 aa12.22□□□□□ -0.45
TDP1-204ENST00000545686 RBM19Q9Y4C8 960 aaKnown RBP12.21□□□□□ -0.45
TDP1-204ENST00000545686 DENND4BO75064 1496 aaPredicted RBP12.2□□□□□ -0.46
TDP1-204ENST00000545686 MIA2Q96PC5 1412 aa12.19□□□□□ -0.46
TDP1-204ENST00000545686 TARBP1Q13395 1621 aaKnown RBP12.19□□□□□ -0.46
TDP1-204ENST00000545686 ERICH6BQ5W0A0 696 aa12.18□□□□□ -0.46
TDP1-204ENST00000545686 CNTLNQ9NXG0 1405 aa12.18□□□□□ -0.46
TDP1-204ENST00000545686 IQGAP2Q13576 1575 aa12.17□□□□□ -0.46
TDP1-204ENST00000545686 KDM6BO15054 1643 aa12.17□□□□□ -0.46
TDP1-204ENST00000545686 WDR62O43379 1518 aa12.16□□□□□ -0.46
TDP1-204ENST00000545686 EPRSP07814 1512 aaKnown RBP12.16□□□□□ -0.46
TDP1-204ENST00000545686 WASHC2AQ641Q2 1341 aa12.15□□□□□ -0.46
TDP1-204ENST00000545686 DNMT1P26358 1616 aaKnown RBP12.14□□□□□ -0.47
TDP1-204ENST00000545686 NCOA1Q15788 1441 aa12.14□□□□□ -0.47
TDP1-204ENST00000545686 ADAMTS12P58397 1594 aa12.14□□□□□ -0.47
TDP1-204ENST00000545686 TDRD9Q8NDG6 1382 aaKnown RBP12.14□□□□□ -0.47
TDP1-204ENST00000545686 HNRNPUQ00839 825 aaKnown RBP eCLIP12.14□□□□□ -0.47
TDP1-204ENST00000545686 PDS5BQ9NTI5 1447 aa12.14□□□□□ -0.47
TDP1-204ENST00000545686 HSPA5P11021 654 aaKnown RBP12.13□□□□□ -0.47
TDP1-204ENST00000545686 EIF4G2P78344 907 aaKnown RBP eCLIP12.13□□□□□ -0.47
TDP1-204ENST00000545686 FANCIQ9NVI1 1328 aa12.12□□□□□ -0.47
TDP1-204ENST00000545686 ROCK1Q13464 1354 aa12.12□□□□□ -0.47
TDP1-204ENST00000545686 RPRD2Q5VT52 1461 aaKnown RBP12.12□□□□□ -0.47
TDP1-204ENST00000545686 TEX14Q8IWB6 1497 aa12.11□□□□□ -0.47
TDP1-204ENST00000545686 ADGBQ8N7X0 1667 aa12.1□□□□□ -0.47
TDP1-204ENST00000545686 CCDC7Q96M83 1385 aa12.1□□□□□ -0.47
TDP1-204ENST00000545686 CDK13Q14004 1512 aaKnown RBP12.09□□□□□ -0.47
TDP1-204ENST00000545686 RRP7BPQ9NSQ0 103 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms