RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ADAMTS12P58397 1594 aa14.96□□□□□ -0.01
USP28-215ENST00000545608 NUP160Q12769 1436 aa14.96□□□□□ -0.01
USP28-215ENST00000545608 CEP170Q5SW79 1584 aa14.94□□□□□ -0.02
USP28-215ENST00000545608 ERCC6L2Q5T890 1561 aa14.93□□□□□ -0.02
USP28-215ENST00000545608 ERICH3Q5RHP9 1530 aa14.92□□□□□ -0.02
USP28-215ENST00000545608 JPH4Q96JJ6 628 aa14.86□□□□□ -0.03
USP28-215ENST00000545608 SHROOM2Q13796 1616 aa14.84□□□□□ -0.03
USP28-215ENST00000545608 PRG4Q92954 1404 aaPredicted RBP14.83□□□□□ -0.04
USP28-215ENST00000545608 IGF1RP08069 1367 aa14.82□□□□□ -0.04
USP28-215ENST00000545608 PPP4R3CPQ6ZMV5 832 aa14.81□□□□□ -0.04
USP28-215ENST00000545608 KIF27Q86VH2 1401 aa14.78□□□□□ -0.04
USP28-215ENST00000545608 EHMT2Q96KQ7 1210 aa14.75□□□□□ -0.05
USP28-215ENST00000545608 RUSC2Q8N2Y8 1516 aa14.74□□□□□ -0.05
USP28-215ENST00000545608 KIAA0586Q9BVV6 1533 aa14.72□□□□□ -0.05
USP28-215ENST00000545608 CARMIL1Q5VZK9 1371 aa14.71□□□□□ -0.06
USP28-215ENST00000545608 NPM1P06748 294 aaKnown RBP eCLIP14.67□□□□□ -0.06
USP28-215ENST00000545608 CUL7Q14999 1698 aa14.67□□□□□ -0.06
USP28-215ENST00000545608 NCBP3Q53F19 620 aaKnown RBP14.66□□□□□ -0.06
USP28-215ENST00000545608 FAM69CQ0P6D2 419 aa14.64□□□□□ -0.07
USP28-215ENST00000545608 TTBK1Q5TCY1 1321 aaPredicted RBP14.62□□□□□ -0.07
USP28-215ENST00000545608 PTPRGP23470 1445 aa14.61□□□□□ -0.07
USP28-215ENST00000545608 ABCC10Q5T3U5 1492 aa14.61□□□□□ -0.07
USP28-215ENST00000545608 ADCY10Q96PN6 1610 aa14.6□□□□□ -0.07
USP28-215ENST00000545608 KIF13AQ9H1H9 1805 aa14.59□□□□□ -0.07
USP28-215ENST00000545608 MAPKBP1O60336 1514 aa14.58□□□□□ -0.08
USP28-215ENST00000545608 TNIKQ9UKE5 1360 aa14.58□□□□□ -0.08
USP28-215ENST00000545608 CARMIL2Q6F5E8 1435 aa14.57□□□□□ -0.08
USP28-215ENST00000545608 RAPGEF2Q9Y4G8 1499 aa14.54□□□□□ -0.08
USP28-215ENST00000545608 IQGAP2Q13576 1575 aa14.53□□□□□ -0.08
USP28-215ENST00000545608 DIP2BQ9P265 1576 aa14.53□□□□□ -0.08
USP28-215ENST00000545608 SLC4A1APQ9BWU0 796 aaKnown RBP14.53□□□□□ -0.08
USP28-215ENST00000545608 DISP1Q96F81 1524 aa14.51□□□□□ -0.09
USP28-215ENST00000545608 ABCC2Q92887 1545 aa14.5□□□□□ -0.09
USP28-215ENST00000545608 UACAQ9BZF9 1416 aa14.49□□□□□ -0.09
USP28-215ENST00000545608 UGGT2Q9NYU1 1516 aa14.47□□□□□ -0.09
USP28-215ENST00000545608 UHRF1BP1LA0JNW5 1464 aa14.47□□□□□ -0.09
USP28-215ENST00000545608 ASXL2Q76L83 1435 aa14.46□□□□□ -0.09
USP28-215ENST00000545608 PLB1Q6P1J6 1458 aa14.44□□□□□ -0.1
USP28-215ENST00000545608 KIAA0556O60303 1618 aa14.41□□□□□ -0.1
USP28-215ENST00000545608 KDM5BQ9UGL1 1544 aa14.41□□□□□ -0.1
USP28-215ENST00000545608 TSPOAP1O95153 1857 aa14.4□□□□□ -0.1
USP28-215ENST00000545608 PRXQ9BXM0 1461 aa14.4□□□□□ -0.1
USP28-215ENST00000545608 KDM6BO15054 1643 aa14.4□□□□□ -0.1
USP28-215ENST00000545608 GLI2P10070 1586 aa14.39□□□□□ -0.11
USP28-215ENST00000545608 SCAF1Q9H7N4 1312 aaKnown RBP14.37□□□□□ -0.11
USP28-215ENST00000545608 EPRSP07814 1512 aaKnown RBP14.36□□□□□ -0.11
USP28-215ENST00000545608 KDM4FA0A1W2PPD8 638 aa14.36□□□□□ -0.11
USP28-215ENST00000545608 NPM3O75607 178 aaKnown RBP14.35□□□□□ -0.11
USP28-215ENST00000545608 GOLGA3Q08378 1498 aa14.34□□□□□ -0.11
USP28-215ENST00000545608 CSRNP3Q8WYN3 585 aa14.34□□□□□ -0.11
USP28-215ENST00000545608 ZCCHC11Q5TAX3 1644 aaKnown RBP14.33□□□□□ -0.11
USP28-215ENST00000545608 PPRC1Q5VV67 1664 aaKnown RBP14.33□□□□□ -0.12
USP28-215ENST00000545608 CTTNBP2Q8WZ74 1663 aa14.33□□□□□ -0.12
USP28-215ENST00000545608 COL17A1Q9UMD9 1497 aaPredicted RBP14.32□□□□□ -0.12
USP28-215ENST00000545608 MSH5O43196 834 aa14.32□□□□□ -0.12
USP28-215ENST00000545608 P3H3Q8IVL6 736 aa14.32□□□□□ -0.12
USP28-215ENST00000545608 KCNH8Q96L42 1107 aa14.3□□□□□ -0.12
USP28-215ENST00000545608 WDR7Q9Y4E6 1490 aa14.3□□□□□ -0.12
USP28-215ENST00000545608 ABCA8O94911 1581 aa14.3□□□□□ -0.12
USP28-215ENST00000545608 CNKSR2Q8WXI2 1034 aa14.29□□□□□ -0.12
USP28-215ENST00000545608 MAP3K4Q9Y6R4 1608 aa14.28□□□□□ -0.12
USP28-215ENST00000545608 TEX14Q8IWB6 1497 aa14.26□□□□□ -0.13
USP28-215ENST00000545608 ARID3CA6NKF2 412 aa14.26□□□□□ -0.13
USP28-215ENST00000545608 CD109Q6YHK3 1445 aa14.24□□□□□ -0.13
USP28-215ENST00000545608 FAM9AQ8IZU1 332 aaPredicted RBP14.24□□□□□ -0.13
USP28-215ENST00000545608 ATP10BO94823 1461 aa14.22□□□□□ -0.13
USP28-215ENST00000545608 RANGAP1P46060 587 aaPredicted RBP14.21□□□□□ -0.13
USP28-215ENST00000545608 EEA1Q15075 1411 aa14.21□□□□□ -0.13
USP28-215ENST00000545608 MAGI3Q5TCQ9 1506 aa14.2□□□□□ -0.14
USP28-215ENST00000545608 ADGRL1O94910 1474 aa14.18□□□□□ -0.14
USP28-215ENST00000545608 SAMD9Q5K651 1589 aa14.17□□□□□ -0.14
USP28-215ENST00000545608 CFAP43Q8NDM7 1665 aa14.16□□□□□ -0.14
USP28-215ENST00000545608 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.15□□□□□ -0.14
USP28-215ENST00000545608 HNRNPUL2Q1KMD3 747 aaKnown RBP14.15□□□□□ -0.14
USP28-215ENST00000545608 FHOD3Q2V2M9 1422 aa14.14□□□□□ -0.15
USP28-215ENST00000545608 NUP153P49790 1475 aaKnown RBP14.12□□□□□ -0.15
USP28-215ENST00000545608 RAPGEF6Q8TEU7 1601 aa14.12□□□□□ -0.15
USP28-215ENST00000545608 ARAP3Q8WWN8 1544 aa14.09□□□□□ -0.15
USP28-215ENST00000545608 PLEKHD1A6NEE1 506 aa14.08□□□□□ -0.16
USP28-215ENST00000545608 PHLDB1Q86UU1 1377 aa14.08□□□□□ -0.16
USP28-215ENST00000545608 ABCA9Q8IUA7 1624 aa14.08□□□□□ -0.16
USP28-215ENST00000545608 RAPGEF3O95398 923 aa14.07□□□□□ -0.16
USP28-215ENST00000545608 KIF21BO75037 1637 aa14.07□□□□□ -0.16
USP28-215ENST00000545608 UBTFP17480 764 aaKnown RBP14.05□□□□□ -0.16
USP28-215ENST00000545608 NEO1Q92859 1461 aa14.03□□□□□ -0.16
USP28-215ENST00000545608 EFCAB5A4FU69 1503 aa14.03□□□□□ -0.16
USP28-215ENST00000545608 ATP1B4Q9UN42 357 aaPredicted RBP13.99□□□□□ -0.17
USP28-215ENST00000545608 CDK13Q14004 1512 aaKnown RBP13.97□□□□□ -0.17
USP28-215ENST00000545608 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.97□□□□□ -0.17
USP28-215ENST00000545608 ARHGAP35Q9NRY4 1499 aa13.97□□□□□ -0.17
USP28-215ENST00000545608 AKNAQ7Z591 1439 aa13.97□□□□□ -0.17
USP28-215ENST00000545608 FRMPD1Q5SYB0 1578 aa13.96□□□□□ -0.18
USP28-215ENST00000545608 HECW2Q9P2P5 1572 aa13.96□□□□□ -0.18
USP28-215ENST00000545608 FANCAO15360 1455 aa13.95□□□□□ -0.18
USP28-215ENST00000545608 DENND4BO75064 1496 aaPredicted RBP13.95□□□□□ -0.18
USP28-215ENST00000545608 MAPK8IP2Q13387 824 aaPredicted RBP13.95□□□□□ -0.18
USP28-215ENST00000545608 ARID4BQ4LE39 1312 aaPredicted RBP13.94□□□□□ -0.18
USP28-215ENST00000545608 FMN1Q68DA7 1419 aa13.94□□□□□ -0.18
USP28-215ENST00000545608 TTC37Q6PGP7 1564 aa13.92□□□□□ -0.18
USP28-215ENST00000545608 PLCH2O75038 1416 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms