RNA–Protein interactions for RNA: ENST00000542879.5

ZEB1-209, Transcript of zinc finger E-box binding homeobox 1, humanhuman

TSL 2

Gene ZEB1, Length 3,645 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZEB1-209ENST00000542879 CLIP1P30622 1438 aa8.42□□□□□ -1.06
ZEB1-209ENST00000542879 CHD1O14646 1710 aa8.41□□□□□ -1.06
ZEB1-209ENST00000542879 MAGI1Q96QZ7 1491 aaPredicted RBP8.41□□□□□ -1.06
ZEB1-209ENST00000542879 CTTNBP2Q8WZ74 1663 aa8.4□□□□□ -1.06
ZEB1-209ENST00000542879 RAPGEF2Q9Y4G8 1499 aa8.4□□□□□ -1.07
ZEB1-209ENST00000542879 BCL11AQ9H165 835 aa8.39□□□□□ -1.07
ZEB1-209ENST00000542879 MIER1Q8N108 512 aa8.38□□□□□ -1.07
ZEB1-209ENST00000542879 POLA1P09884 1462 aaPredicted RBP8.37□□□□□ -1.07
ZEB1-209ENST00000542879 HNRNPUL2Q1KMD3 747 aaKnown RBP8.34□□□□□ -1.07
ZEB1-209ENST00000542879 ARAP1Q96P48 1450 aa8.34□□□□□ -1.07
ZEB1-209ENST00000542879 CLSPNQ9HAW4 1339 aa8.33□□□□□ -1.08
ZEB1-209ENST00000542879 PRXQ9BXM0 1461 aa8.33□□□□□ -1.08
ZEB1-209ENST00000542879 DHX57Q6P158 1386 aaKnown RBP8.32□□□□□ -1.08
ZEB1-209ENST00000542879 YTHDC1Q96MU7 727 aaKnown RBP8.31□□□□□ -1.08
ZEB1-209ENST00000542879 SAMD9Q5K651 1589 aa8.3□□□□□ -1.08
ZEB1-209ENST00000542879 NUP160Q12769 1436 aa8.3□□□□□ -1.08
ZEB1-209ENST00000542879 RRBP1Q9P2E9 1410 aaKnown RBP8.3□□□□□ -1.08
ZEB1-209ENST00000542879 FGD5Q6ZNL6 1462 aa8.28□□□□□ -1.08
ZEB1-209ENST00000542879 UGGT2Q9NYU1 1516 aa8.25□□□□□ -1.09
ZEB1-209ENST00000542879 GRIN2BQ13224 1484 aa8.25□□□□□ -1.09
ZEB1-209ENST00000542879 SYNJ2O15056 1496 aa8.25□□□□□ -1.09
ZEB1-209ENST00000542879 CEP170Q5SW79 1584 aa8.24□□□□□ -1.09
ZEB1-209ENST00000542879 KANK4Q5T7N3 995 aaPredicted RBP8.23□□□□□ -1.09
ZEB1-209ENST00000542879 ARHGAP35Q9NRY4 1499 aa8.22□□□□□ -1.09
ZEB1-209ENST00000542879 MAPKBP1O60336 1514 aa8.21□□□□□ -1.09
ZEB1-209ENST00000542879 ERCC6Q03468 1493 aa8.21□□□□□ -1.1
ZEB1-209ENST00000542879 MAP3K1Q13233 1512 aa8.21□□□□□ -1.1
ZEB1-209ENST00000542879 SUPT16HQ9Y5B9 1047 aaKnown RBP8.19□□□□□ -1.1
ZEB1-209ENST00000542879 UHRF1BP1LA0JNW5 1464 aa8.19□□□□□ -1.1
ZEB1-209ENST00000542879 TIAM1Q13009 1591 aa8.19□□□□□ -1.1
ZEB1-209ENST00000542879 KIF27Q86VH2 1401 aa8.19□□□□□ -1.1
ZEB1-209ENST00000542879 CCNB3Q8WWL7 1395 aa8.19□□□□□ -1.1
ZEB1-209ENST00000542879 KDM5BQ9UGL1 1544 aa8.18□□□□□ -1.1
ZEB1-209ENST00000542879 GLI2P10070 1586 aa8.18□□□□□ -1.1
ZEB1-209ENST00000542879 CFAP43Q8NDM7 1665 aa8.18□□□□□ -1.1
ZEB1-209ENST00000542879 ADCY10Q96PN6 1610 aa8.18□□□□□ -1.1
ZEB1-209ENST00000542879 FHAD1B1AJZ9 1412 aa8.17□□□□□ -1.1
ZEB1-209ENST00000542879 EFCAB5A4FU69 1503 aa8.17□□□□□ -1.1
ZEB1-209ENST00000542879 RIMBP3CA6NJZ7 1639 aa8.16□□□□□ -1.1
ZEB1-209ENST00000542879 RIMBP3BA6NNM3 1639 aa8.16□□□□□ -1.1
ZEB1-209ENST00000542879 RIMBP3Q9UFD9 1639 aa8.16□□□□□ -1.1
ZEB1-209ENST00000542879 GRIN2AQ12879 1464 aa8.16□□□□□ -1.1
ZEB1-209ENST00000542879 RANGAP1P46060 587 aaPredicted RBP8.16□□□□□ -1.1
ZEB1-209ENST00000542879 RAB3GAP2Q9H2M9 1393 aa8.14□□□□□ -1.11
ZEB1-209ENST00000542879 GAPVD1Q14C86 1478 aa8.14□□□□□ -1.11
ZEB1-209ENST00000542879 ZNF608Q9ULD9 1512 aaPredicted RBP8.12□□□□□ -1.11
ZEB1-209ENST00000542879 LRRC9Q6ZRR7 1453 aa8.12□□□□□ -1.11
ZEB1-209ENST00000542879 KIAA0556O60303 1618 aa8.12□□□□□ -1.11
ZEB1-209ENST00000542879 TSHZ2Q9NRE2 1034 aa8.11□□□□□ -1.11
ZEB1-209ENST00000542879 ABCA8O94911 1581 aa8.11□□□□□ -1.11
ZEB1-209ENST00000542879 SETD5Q9C0A6 1442 aa8.1□□□□□ -1.11
ZEB1-209ENST00000542879 PCF11O94913 1555 aaKnown RBP8.1□□□□□ -1.11
ZEB1-209ENST00000542879 BCORL1Q5H9F3 1711 aa8.1□□□□□ -1.11
ZEB1-209ENST00000542879 IGF1RP08069 1367 aa8.1□□□□□ -1.11
ZEB1-209ENST00000542879 IQGAP2Q13576 1575 aa8.1□□□□□ -1.11
ZEB1-209ENST00000542879 KIF13AQ9H1H9 1805 aa8.1□□□□□ -1.11
ZEB1-209ENST00000542879 ARAP3Q8WWN8 1544 aa8.09□□□□□ -1.11
ZEB1-209ENST00000542879 SNAPC4Q5SXM2 1469 aa8.09□□□□□ -1.11
ZEB1-209ENST00000542879 ANP32EQ9BTT0 268 aa8.09□□□□□ -1.11
ZEB1-209ENST00000542879 MAP3K4Q9Y6R4 1608 aa8.09□□□□□ -1.12
ZEB1-209ENST00000542879 PPRC1Q5VV67 1664 aaKnown RBP8.09□□□□□ -1.12
ZEB1-209ENST00000542879 PHLDB1Q86UU1 1377 aa8.09□□□□□ -1.12
ZEB1-209ENST00000542879 KIAA0586Q9BVV6 1533 aa8.08□□□□□ -1.12
ZEB1-209ENST00000542879 KCNH8Q96L42 1107 aa8.08□□□□□ -1.12
ZEB1-209ENST00000542879 LRRIQ1Q96JM4 1722 aa8.07□□□□□ -1.12
ZEB1-209ENST00000542879 AQRO60306 1485 aaKnown RBP eCLIP8.07□□□□□ -1.12
ZEB1-209ENST00000542879 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.05□□□□□ -1.12
ZEB1-209ENST00000542879 PPP1R15AO75807 674 aaPredicted RBP8.05□□□□□ -1.12
ZEB1-209ENST00000542879 CARMIL1Q5VZK9 1371 aa8.05□□□□□ -1.12
ZEB1-209ENST00000542879 TIMELESSQ9UNS1 1208 aa8.04□□□□□ -1.12
ZEB1-209ENST00000542879 FYCO1Q9BQS8 1478 aa8.04□□□□□ -1.12
ZEB1-209ENST00000542879 RAD54L2Q9Y4B4 1467 aa8.03□□□□□ -1.12
ZEB1-209ENST00000542879 DISP1Q96F81 1524 aa8.03□□□□□ -1.12
ZEB1-209ENST00000542879 ITGAEP38570 1179 aa8.02□□□□□ -1.13
ZEB1-209ENST00000542879 ARHGEF11O15085 1522 aa8.02□□□□□ -1.13
ZEB1-209ENST00000542879 CASKIN1Q8WXD9 1431 aa8.01□□□□□ -1.13
ZEB1-209ENST00000542879 SIN3AQ96ST3 1273 aa8.01□□□□□ -1.13
ZEB1-209ENST00000542879 CFAP74Q9C0B2 1584 aa8.01□□□□□ -1.13
ZEB1-209ENST00000542879 CCER2I3L3R5 266 aa8□□□□□ -1.13
ZEB1-209ENST00000542879 ABCA9Q8IUA7 1624 aa8□□□□□ -1.13
ZEB1-209ENST00000542879 PTPN23Q9H3S7 1636 aa8□□□□□ -1.13
ZEB1-209ENST00000542879 REREQ9P2R6 1566 aa8□□□□□ -1.13
ZEB1-209ENST00000542879 DDX10Q13206 875 aaKnown RBP7.99□□□□□ -1.13
ZEB1-209ENST00000542879 MSH5O43196 834 aa7.98□□□□□ -1.13
ZEB1-209ENST00000542879 FHOD3Q2V2M9 1422 aa7.98□□□□□ -1.13
ZEB1-209ENST00000542879 ABCC2Q92887 1545 aa7.98□□□□□ -1.13
ZEB1-209ENST00000542879 FGD6Q6ZV73 1430 aa7.97□□□□□ -1.13
ZEB1-209ENST00000542879 ZCCHC11Q5TAX3 1644 aaKnown RBP7.97□□□□□ -1.13
ZEB1-209ENST00000542879 FKBP8Q14318 412 aa7.97□□□□□ -1.13
ZEB1-209ENST00000542879 DIP2BQ9P265 1576 aa7.96□□□□□ -1.13
ZEB1-209ENST00000542879 CCDC18Q5T9S5 1454 aa7.96□□□□□ -1.13
ZEB1-209ENST00000542879 HFM1A2PYH4 1435 aa7.96□□□□□ -1.13
ZEB1-209ENST00000542879 FAM135AQ9P2D6 1515 aa7.96□□□□□ -1.14
ZEB1-209ENST00000542879 PTPRKQ15262 1439 aa7.96□□□□□ -1.14
ZEB1-209ENST00000542879 GCC2Q8IWJ2 1684 aa7.96□□□□□ -1.14
ZEB1-209ENST00000542879 UACAQ9BZF9 1416 aa7.96□□□□□ -1.14
ZEB1-209ENST00000542879 RAPGEF6Q8TEU7 1601 aa7.95□□□□□ -1.14
ZEB1-209ENST00000542879 FAM50AQ14320 339 aaKnown RBP7.95□□□□□ -1.14
ZEB1-209ENST00000542879 HECW1Q76N89 1606 aa7.94□□□□□ -1.14
ZEB1-209ENST00000542879 SUPT6HQ7KZ85 1726 aaKnown RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms