RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 CFTRP13569 1480 aa19.47■□□□□ 0.71
PTPN1-202ENST00000541713 TDRD9Q8NDG6 1382 aaKnown RBP19.45■□□□□ 0.7
PTPN1-202ENST00000541713 NESP48681 1621 aa19.45■□□□□ 0.7
PTPN1-202ENST00000541713 FGD5Q6ZNL6 1462 aa19.45■□□□□ 0.7
PTPN1-202ENST00000541713 PHLDB1Q86UU1 1377 aa19.44■□□□□ 0.7
PTPN1-202ENST00000541713 TRIM52Q96A61 297 aa19.44■□□□□ 0.7
PTPN1-202ENST00000541713 RRP7BPQ9NSQ0 103 aa19.4■□□□□ 0.7
PTPN1-202ENST00000541713 ERICH3Q5RHP9 1530 aa19.35■□□□□ 0.69
PTPN1-202ENST00000541713 BIVM-ERCC5R4GMW8 1640 aa19.35■□□□□ 0.69
PTPN1-202ENST00000541713 SENP3-EIF4A1A0A087X0R7 540 aa19.32■□□□□ 0.68
PTPN1-202ENST00000541713 SUPT16HQ9Y5B9 1047 aaKnown RBP19.32■□□□□ 0.68
PTPN1-202ENST00000541713 FANCD2Q9BXW9 1451 aa19.32■□□□□ 0.68
PTPN1-202ENST00000541713 FOXD1Q16676 465 aa19.32■□□□□ 0.68
PTPN1-202ENST00000541713 RRBP1Q9P2E9 1410 aaKnown RBP19.31■□□□□ 0.68
PTPN1-202ENST00000541713 SETD5Q9C0A6 1442 aa19.3■□□□□ 0.68
PTPN1-202ENST00000541713 HMGXB3Q12766 1538 aa19.3■□□□□ 0.68
PTPN1-202ENST00000541713 MTUS2Q5JR59 1369 aa19.3■□□□□ 0.68
PTPN1-202ENST00000541713 POLR3GLQ9BT43 218 aa19.28■□□□□ 0.68
PTPN1-202ENST00000541713 CLSPNQ9HAW4 1339 aa19.27■□□□□ 0.67
PTPN1-202ENST00000541713 FKBP8Q14318 412 aa19.27■□□□□ 0.67
PTPN1-202ENST00000541713 FBLN2P98095 1184 aa19.26■□□□□ 0.67
PTPN1-202ENST00000541713 IRX6P78412 446 aaPredicted RBP19.23■□□□□ 0.67
PTPN1-202ENST00000541713 LRRC9Q6ZRR7 1453 aa19.23■□□□□ 0.67
PTPN1-202ENST00000541713 CC2D2AQ9P2K1 1620 aa19.22■□□□□ 0.67
PTPN1-202ENST00000541713 TONSLQ96HA7 1378 aa19.21■□□□□ 0.67
PTPN1-202ENST00000541713 ANP32CO43423 234 aa19.18■□□□□ 0.66
PTPN1-202ENST00000541713 ZNF326Q5BKZ1 582 aaKnown RBP19.18■□□□□ 0.66
PTPN1-202ENST00000541713 ZNF777Q9ULD5 760 aaPredicted RBP19.16■□□□□ 0.66
PTPN1-202ENST00000541713 PPP1R15AO75807 674 aaPredicted RBP19.16■□□□□ 0.66
PTPN1-202ENST00000541713 WDR97A6NE52 1622 aa19.15■□□□□ 0.66
PTPN1-202ENST00000541713 FHAD1B1AJZ9 1412 aa19.15■□□□□ 0.66
PTPN1-202ENST00000541713 POLA1P09884 1462 aaPredicted RBP19.15■□□□□ 0.66
PTPN1-202ENST00000541713 TIAM1Q13009 1591 aa19.14■□□□□ 0.66
PTPN1-202ENST00000541713 MAPKBP1O60336 1514 aa19.11■□□□□ 0.65
PTPN1-202ENST00000541713 PCF11O94913 1555 aaKnown RBP19.1■□□□□ 0.65
PTPN1-202ENST00000541713 TOPBP1Q92547 1522 aa19.08■□□□□ 0.64
PTPN1-202ENST00000541713 NEFLP07196 543 aa19.08■□□□□ 0.64
PTPN1-202ENST00000541713 HNRNPUQ00839 825 aaKnown RBP eCLIP19.06■□□□□ 0.64
PTPN1-202ENST00000541713 PTPRKQ15262 1439 aa19.04■□□□□ 0.64
PTPN1-202ENST00000541713 ZNF644Q9H582 1327 aaPredicted RBP19.04■□□□□ 0.64
PTPN1-202ENST00000541713 FAM9BQ8IZU0 186 aa19.02■□□□□ 0.64
PTPN1-202ENST00000541713 AQRO60306 1485 aaKnown RBP eCLIP19.02■□□□□ 0.643e-7■■■■□ 22.6
PTPN1-202ENST00000541713 FGD6Q6ZV73 1430 aa18.99■□□□□ 0.63
PTPN1-202ENST00000541713 TSHZ2Q9NRE2 1034 aa18.99■□□□□ 0.63
PTPN1-202ENST00000541713 HSPA5P11021 654 aaKnown RBP18.98■□□□□ 0.63
PTPN1-202ENST00000541713 URB2Q14146 1524 aaKnown RBP18.96■□□□□ 0.63
PTPN1-202ENST00000541713 GAPVD1Q14C86 1478 aa18.96■□□□□ 0.63
PTPN1-202ENST00000541713 CCDC18Q5T9S5 1454 aa18.96■□□□□ 0.63
PTPN1-202ENST00000541713 CASKIN1Q8WXD9 1431 aa18.95■□□□□ 0.62
PTPN1-202ENST00000541713 FMN1Q68DA7 1419 aa18.94■□□□□ 0.62
PTPN1-202ENST00000541713 CCDC184Q52MB2 194 aa18.94■□□□□ 0.62
PTPN1-202ENST00000541713 PDS5BQ9NTI5 1447 aa18.94■□□□□ 0.62
PTPN1-202ENST00000541713 L3MBTL2Q969R5 705 aa18.93■□□□□ 0.62
PTPN1-202ENST00000541713 SLC4A1APQ9BWU0 796 aaKnown RBP18.92■□□□□ 0.62
PTPN1-202ENST00000541713 ABCA10Q8WWZ4 1543 aa18.91■□□□□ 0.62
PTPN1-202ENST00000541713 NCOA2Q15596 1464 aa18.91■□□□□ 0.62
PTPN1-202ENST00000541713 MPHOSPH9Q99550 1183 aa18.9■□□□□ 0.62
PTPN1-202ENST00000541713 DNMBPQ6XZF7 1577 aa18.89■□□□□ 0.62
PTPN1-202ENST00000541713 KDM2AQ9Y2K7 1162 aa18.87■□□□□ 0.61
PTPN1-202ENST00000541713 C11orf95C9JLR9 678 aaPredicted RBP18.86■□□□□ 0.61
PTPN1-202ENST00000541713 FYCO1Q9BQS8 1478 aa18.86■□□□□ 0.61
PTPN1-202ENST00000541713 EIF4G2P78344 907 aaKnown RBP eCLIP18.85■□□□□ 0.614e-6■□□□□ 10.5
PTPN1-202ENST00000541713 CHMP7Q8WUX9 453 aaPredicted RBP18.84■□□□□ 0.61
PTPN1-202ENST00000541713 WASHC2AQ641Q2 1341 aa18.83■□□□□ 0.61
PTPN1-202ENST00000541713 NAIPQ13075 1403 aa18.83■□□□□ 0.6
PTPN1-202ENST00000541713 CDK13Q14004 1512 aaKnown RBP18.83■□□□□ 0.6
PTPN1-202ENST00000541713 MYOM3Q5VTT5 1437 aa18.82■□□□□ 0.6
PTPN1-202ENST00000541713 SALL2Q9Y467 1007 aaPredicted RBP18.82■□□□□ 0.6
PTPN1-202ENST00000541713 MRS2Q9HD23 443 aa18.82■□□□□ 0.6
PTPN1-202ENST00000541713 NBPF8Q3BBV2 869 aa18.79■□□□□ 0.6
PTPN1-202ENST00000541713 CFDP1Q9UEE9 299 aaPredicted RBP18.79■□□□□ 0.6
PTPN1-202ENST00000541713 UACAQ9BZF9 1416 aa18.77■□□□□ 0.6
PTPN1-202ENST00000541713 TIMELESSQ9UNS1 1208 aa18.77■□□□□ 0.6
PTPN1-202ENST00000541713 SNAPC4Q5SXM2 1469 aa18.76■□□□□ 0.59
PTPN1-202ENST00000541713 MAP3K1Q13233 1512 aa18.75■□□□□ 0.59
PTPN1-202ENST00000541713 HFM1A2PYH4 1435 aa18.75■□□□□ 0.59
PTPN1-202ENST00000541713 ZNF608Q9ULD9 1512 aaPredicted RBP18.73■□□□□ 0.59
PTPN1-202ENST00000541713 CCER2I3L3R5 266 aa18.73■□□□□ 0.59
PTPN1-202ENST00000541713 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.72■□□□□ 0.599e-7■■■□□ 17.6
PTPN1-202ENST00000541713 MAGI3Q5TCQ9 1506 aa18.72■□□□□ 0.59
PTPN1-202ENST00000541713 RGL3Q3MIN7 710 aa18.7■□□□□ 0.58
PTPN1-202ENST00000541713 EFCAB5A4FU69 1503 aa18.7■□□□□ 0.58
PTPN1-202ENST00000541713 B4GALNT3Q6L9W6 998 aa18.69■□□□□ 0.58
PTPN1-202ENST00000541713 PKD2Q13563 968 aa18.69■□□□□ 0.58
PTPN1-202ENST00000541713 CDK11AQ9UQ88 783 aaPredicted RBP18.69■□□□□ 0.58
PTPN1-202ENST00000541713 RBM19Q9Y4C8 960 aaKnown RBP18.69■□□□□ 0.58
PTPN1-202ENST00000541713 CFAP43Q8NDM7 1665 aa18.69■□□□□ 0.58
PTPN1-202ENST00000541713 PRDM2Q13029 1718 aa18.69■□□□□ 0.58
PTPN1-202ENST00000541713 PTPN23Q9H3S7 1636 aa18.66■□□□□ 0.58
PTPN1-202ENST00000541713 GRIN2BQ13224 1484 aa18.66■□□□□ 0.58
PTPN1-202ENST00000541713 PRG4Q92954 1404 aaPredicted RBP18.64■□□□□ 0.58
PTPN1-202ENST00000541713 HNRNPMP52272 730 aaKnown RBP eCLIP18.64■□□□□ 0.579e-8■■■■□ 25.7
PTPN1-202ENST00000541713 KDM6BO15054 1643 aa18.64■□□□□ 0.57
PTPN1-202ENST00000541713 EPRSP07814 1512 aaKnown RBP18.63■□□□□ 0.57
PTPN1-202ENST00000541713 CUL7Q14999 1698 aa18.62■□□□□ 0.57
PTPN1-202ENST00000541713 CTTNBP2Q8WZ74 1663 aa18.61■□□□□ 0.57
PTPN1-202ENST00000541713 PRKRIP1Q9H875 184 aaPredicted RBP18.61■□□□□ 0.57
PTPN1-202ENST00000541713 THOC2Q8NI27 1593 aaKnown RBP18.61■□□□□ 0.57
PTPN1-202ENST00000541713 KIF21AQ7Z4S6 1674 aa18.6■□□□□ 0.57
PTPN1-202ENST00000541713 KIF7Q2M1P5 1343 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms