RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 RUSC2Q8N2Y8 1516 aa16.75■□□□□ 0.27
CHFR-219ENST00000541341 TSPOAP1O95153 1857 aa16.71■□□□□ 0.27
CHFR-219ENST00000541341 JPH4Q96JJ6 628 aa16.69■□□□□ 0.26
CHFR-219ENST00000541341 ADCY10Q96PN6 1610 aa16.65■□□□□ 0.26
CHFR-219ENST00000541341 CHIC1Q5VXU3 224 aa16.64■□□□□ 0.25
CHFR-219ENST00000541341 TTBK1Q5TCY1 1321 aaPredicted RBP16.64■□□□□ 0.25
CHFR-219ENST00000541341 CUL7Q14999 1698 aa16.61■□□□□ 0.25
CHFR-219ENST00000541341 DIP2BQ9P265 1576 aa16.59■□□□□ 0.25
CHFR-219ENST00000541341 FAM69CQ0P6D2 419 aa16.58■□□□□ 0.24
CHFR-219ENST00000541341 NPM1P06748 294 aaKnown RBP eCLIP16.57■□□□□ 0.24
CHFR-219ENST00000541341 PELP1Q8IZL8 1130 aaKnown RBP16.55■□□□□ 0.24
CHFR-219ENST00000541341 KIF27Q86VH2 1401 aa16.54■□□□□ 0.24
CHFR-219ENST00000541341 IGF1RP08069 1367 aa16.54■□□□□ 0.24
CHFR-219ENST00000541341 ABCC10Q5T3U5 1492 aa16.54■□□□□ 0.24
CHFR-219ENST00000541341 MAPKBP1O60336 1514 aa16.53■□□□□ 0.24
CHFR-219ENST00000541341 KIAA0586Q9BVV6 1533 aa16.53■□□□□ 0.24
CHFR-219ENST00000541341 ZEB1P37275 1124 aaPredicted RBP16.52■□□□□ 0.24
CHFR-219ENST00000541341 KDM6BO15054 1643 aa16.51■□□□□ 0.23
CHFR-219ENST00000541341 CARMIL1Q5VZK9 1371 aa16.46■□□□□ 0.23
CHFR-219ENST00000541341 IQGAP2Q13576 1575 aa16.45■□□□□ 0.22
CHFR-219ENST00000541341 PTPRGP23470 1445 aa16.43■□□□□ 0.22
CHFR-219ENST00000541341 PPRC1Q5VV67 1664 aaKnown RBP16.43■□□□□ 0.22
CHFR-219ENST00000541341 PCGF6Q9BYE7 350 aa16.4■□□□□ 0.22
CHFR-219ENST00000541341 CARMIL2Q6F5E8 1435 aa16.37■□□□□ 0.21
CHFR-219ENST00000541341 ABCC2Q92887 1545 aa16.37■□□□□ 0.21
CHFR-219ENST00000541341 TNIKQ9UKE5 1360 aa16.37■□□□□ 0.21
CHFR-219ENST00000541341 CTTNBP2Q8WZ74 1663 aa16.37■□□□□ 0.21
CHFR-219ENST00000541341 TRIM26Q12899 539 aaPredicted RBP16.36■□□□□ 0.21
CHFR-219ENST00000541341 ZCCHC11Q5TAX3 1644 aaKnown RBP16.36■□□□□ 0.21
CHFR-219ENST00000541341 ASXL2Q76L83 1435 aa16.36■□□□□ 0.21
CHFR-219ENST00000541341 DISP1Q96F81 1524 aa16.35■□□□□ 0.21
CHFR-219ENST00000541341 KDM4FA0A1W2PPD8 638 aa16.33■□□□□ 0.2
CHFR-219ENST00000541341 KIAA0556O60303 1618 aa16.32■□□□□ 0.2
CHFR-219ENST00000541341 RAPGEF2Q9Y4G8 1499 aa16.3■□□□□ 0.2
CHFR-219ENST00000541341 UACAQ9BZF9 1416 aa16.3■□□□□ 0.2
CHFR-219ENST00000541341 MAP3K4Q9Y6R4 1608 aa16.29■□□□□ 0.2
CHFR-219ENST00000541341 GLI2P10070 1586 aa16.29■□□□□ 0.2
CHFR-219ENST00000541341 PLB1Q6P1J6 1458 aa16.28■□□□□ 0.2
CHFR-219ENST00000541341 UHRF1BP1LA0JNW5 1464 aa16.27■□□□□ 0.19
CHFR-219ENST00000541341 UGGT2Q9NYU1 1516 aa16.26■□□□□ 0.19
CHFR-219ENST00000541341 EPRSP07814 1512 aaKnown RBP16.24■□□□□ 0.19
CHFR-219ENST00000541341 EEA1Q15075 1411 aa16.23■□□□□ 0.19
CHFR-219ENST00000541341 KDM5BQ9UGL1 1544 aa16.23■□□□□ 0.19
CHFR-219ENST00000541341 COL17A1Q9UMD9 1497 aaPredicted RBP16.22■□□□□ 0.19
CHFR-219ENST00000541341 ADGRL1O94910 1474 aa16.21■□□□□ 0.19
CHFR-219ENST00000541341 ARID3CA6NKF2 412 aa16.18■□□□□ 0.18
CHFR-219ENST00000541341 KCNH8Q96L42 1107 aa16.16■□□□□ 0.18
CHFR-219ENST00000541341 CFAP43Q8NDM7 1665 aa16.15■□□□□ 0.18
CHFR-219ENST00000541341 TEX14Q8IWB6 1497 aa16.15■□□□□ 0.18
CHFR-219ENST00000541341 WDR7Q9Y4E6 1490 aa16.15■□□□□ 0.18
CHFR-219ENST00000541341 ABCA8O94911 1581 aa16.14■□□□□ 0.17
CHFR-219ENST00000541341 P3H3Q8IVL6 736 aa16.14■□□□□ 0.17
CHFR-219ENST00000541341 KIF21BO75037 1637 aa16.12■□□□□ 0.17
CHFR-219ENST00000541341 GOLGA3Q08378 1498 aa16.1■□□□□ 0.17
CHFR-219ENST00000541341 MYT1Q01538 1121 aa16.1■□□□□ 0.17
CHFR-219ENST00000541341 PRXQ9BXM0 1461 aa16.09■□□□□ 0.17
CHFR-219ENST00000541341 CD109Q6YHK3 1445 aa16.08■□□□□ 0.16
CHFR-219ENST00000541341 RANGAP1P46060 587 aaPredicted RBP16.07■□□□□ 0.16
CHFR-219ENST00000541341 HECW2Q9P2P5 1572 aa16.07■□□□□ 0.16
CHFR-219ENST00000541341 CSRNP3Q8WYN3 585 aa16.05■□□□□ 0.16
CHFR-219ENST00000541341 MAGI3Q5TCQ9 1506 aa16.01■□□□□ 0.15
CHFR-219ENST00000541341 ILDR1Q86SU0 546 aaPredicted RBP16.01■□□□□ 0.15
CHFR-219ENST00000541341 RAPGEF6Q8TEU7 1601 aa16.01■□□□□ 0.15
CHFR-219ENST00000541341 SAMD9Q5K651 1589 aa16■□□□□ 0.15
CHFR-219ENST00000541341 ATP10BO94823 1461 aa15.99■□□□□ 0.15
CHFR-219ENST00000541341 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.97■□□□□ 0.15
CHFR-219ENST00000541341 HNRNPUL2Q1KMD3 747 aaKnown RBP15.97■□□□□ 0.15
CHFR-219ENST00000541341 ABCA9Q8IUA7 1624 aa15.97■□□□□ 0.15
CHFR-219ENST00000541341 FAM9AQ8IZU1 332 aaPredicted RBP15.96■□□□□ 0.15
CHFR-219ENST00000541341 PPARGC1BQ86YN6 1023 aaKnown RBP15.93■□□□□ 0.14
CHFR-219ENST00000541341 EHMT2Q96KQ7 1210 aa15.93■□□□□ 0.14
CHFR-219ENST00000541341 FHOD3Q2V2M9 1422 aa15.91■□□□□ 0.14
CHFR-219ENST00000541341 RAPGEF3O95398 923 aa15.9■□□□□ 0.14
CHFR-219ENST00000541341 ARAP3Q8WWN8 1544 aa15.89■□□□□ 0.13
CHFR-219ENST00000541341 FRMPD1Q5SYB0 1578 aa15.89■□□□□ 0.13
CHFR-219ENST00000541341 LOC105371045A0A1W2PR82 267 aa15.89■□□□□ 0.13
CHFR-219ENST00000541341 ADAMTSL3P82987 1691 aa15.88■□□□□ 0.13
CHFR-219ENST00000541341 NUP153P49790 1475 aaKnown RBP15.87■□□□□ 0.13
CHFR-219ENST00000541341 BCORL1Q5H9F3 1711 aa15.87■□□□□ 0.13
CHFR-219ENST00000541341 MADDQ8WXG6 1647 aa15.86■□□□□ 0.13
CHFR-219ENST00000541341 RIMS1Q86UR5 1692 aaKnown RBP15.86■□□□□ 0.13
CHFR-219ENST00000541341 RICTORQ6R327 1708 aa15.85■□□□□ 0.13
CHFR-219ENST00000541341 PLPPR3Q6T4P5 718 aa15.84■□□□□ 0.13
CHFR-219ENST00000541341 TTC37Q6PGP7 1564 aa15.83■□□□□ 0.13
CHFR-219ENST00000541341 ARID4BQ4LE39 1312 aaPredicted RBP15.83■□□□□ 0.12
CHFR-219ENST00000541341 SIGLEC1Q9BZZ2 1709 aa15.82■□□□□ 0.12
CHFR-219ENST00000541341 PTPRMP28827 1452 aa15.81■□□□□ 0.12
CHFR-219ENST00000541341 CDK13Q14004 1512 aaKnown RBP15.8■□□□□ 0.12
CHFR-219ENST00000541341 NEO1Q92859 1461 aa15.8■□□□□ 0.12
CHFR-219ENST00000541341 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.79■□□□□ 0.127e-8■■■□□ 15.3
CHFR-219ENST00000541341 ARHGEF40Q8TER5 1519 aa15.78■□□□□ 0.12
CHFR-219ENST00000541341 ATP1B4Q9UN42 357 aaPredicted RBP15.77■□□□□ 0.12
CHFR-219ENST00000541341 CFAP74Q9C0B2 1584 aa15.77■□□□□ 0.11
CHFR-219ENST00000541341 PLEKHD1A6NEE1 506 aa15.76■□□□□ 0.11
CHFR-219ENST00000541341 LRRIQ1Q96JM4 1722 aa15.75■□□□□ 0.11
CHFR-219ENST00000541341 FANCAO15360 1455 aa15.75■□□□□ 0.11
CHFR-219ENST00000541341 AKNAQ7Z591 1439 aa15.75■□□□□ 0.11
CHFR-219ENST00000541341 PHLDB1Q86UU1 1377 aa15.75■□□□□ 0.11
CHFR-219ENST00000541341 MYO5CQ9NQX4 1742 aa15.74■□□□□ 0.11
CHFR-219ENST00000541341 EFCAB5A4FU69 1503 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms