RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 PDS5BQ9NTI5 1447 aa18.56■□□□□ 0.56
RNF4-222ENST00000541204 ITGAEP38570 1179 aa18.54■□□□□ 0.56
RNF4-222ENST00000541204 YTHDC1Q96MU7 727 aaKnown RBP18.52■□□□□ 0.55
RNF4-222ENST00000541204 MIER1Q8N108 512 aa18.48■□□□□ 0.55
RNF4-222ENST00000541204 FHOD3Q2V2M9 1422 aa18.47■□□□□ 0.55
RNF4-222ENST00000541204 KIF21AQ7Z4S6 1674 aa18.46■□□□□ 0.55
RNF4-222ENST00000541204 GAPVD1Q14C86 1478 aa18.42■□□□□ 0.54
RNF4-222ENST00000541204 CCNB3Q8WWL7 1395 aa18.41■□□□□ 0.54
RNF4-222ENST00000541204 RRBP1Q9P2E9 1410 aaKnown RBP18.39■□□□□ 0.53
RNF4-222ENST00000541204 CUL7Q14999 1698 aa18.38■□□□□ 0.53
RNF4-222ENST00000541204 FHAD1B1AJZ9 1412 aa18.38■□□□□ 0.53
RNF4-222ENST00000541204 TIAM1Q13009 1591 aa18.37■□□□□ 0.53
RNF4-222ENST00000541204 WDR97A6NE52 1622 aa18.36■□□□□ 0.53
RNF4-222ENST00000541204 PCF11O94913 1555 aaKnown RBP18.36■□□□□ 0.53
RNF4-222ENST00000541204 FAM50AQ14320 339 aaKnown RBP18.36■□□□□ 0.53
RNF4-222ENST00000541204 ABCA5Q8WWZ7 1642 aa18.35■□□□□ 0.53
RNF4-222ENST00000541204 LRRC9Q6ZRR7 1453 aa18.34■□□□□ 0.53
RNF4-222ENST00000541204 AQRO60306 1485 aaKnown RBP eCLIP18.34■□□□□ 0.537e-8■■■■■ 35.3
RNF4-222ENST00000541204 PHLDB1Q86UU1 1377 aa18.32■□□□□ 0.52
RNF4-222ENST00000541204 DHX57Q6P158 1386 aaKnown RBP18.32■□□□□ 0.52
RNF4-222ENST00000541204 CTTNBP2Q8WZ74 1663 aa18.29■□□□□ 0.52
RNF4-222ENST00000541204 TARBP1Q13395 1621 aaKnown RBP18.28■□□□□ 0.52
RNF4-222ENST00000541204 CLSPNQ9HAW4 1339 aa18.28■□□□□ 0.52
RNF4-222ENST00000541204 EFCAB5A4FU69 1503 aa18.27■□□□□ 0.52
RNF4-222ENST00000541204 MRC2Q9UBG0 1479 aa18.27■□□□□ 0.52
RNF4-222ENST00000541204 MAP3K1Q13233 1512 aa18.27■□□□□ 0.51
RNF4-222ENST00000541204 CASKIN1Q8WXD9 1431 aa18.25■□□□□ 0.51
RNF4-222ENST00000541204 FYCO1Q9BQS8 1478 aa18.24■□□□□ 0.51
RNF4-222ENST00000541204 FMN1Q68DA7 1419 aa18.23■□□□□ 0.51
RNF4-222ENST00000541204 ARID3CA6NKF2 412 aa18.22■□□□□ 0.51
RNF4-222ENST00000541204 ZNF608Q9ULD9 1512 aaPredicted RBP18.21■□□□□ 0.51
RNF4-222ENST00000541204 RAB3GAP2Q9H2M9 1393 aa18.2■□□□□ 0.5
RNF4-222ENST00000541204 CFAP43Q8NDM7 1665 aa18.19■□□□□ 0.5
RNF4-222ENST00000541204 MTUS2Q5JR59 1369 aa18.18■□□□□ 0.5
RNF4-222ENST00000541204 ERCC6Q03468 1493 aa18.17■□□□□ 0.5
RNF4-222ENST00000541204 SNAPC4Q5SXM2 1469 aa18.17■□□□□ 0.5
RNF4-222ENST00000541204 PBRM1Q86U86 1689 aa18.15■□□□□ 0.5
RNF4-222ENST00000541204 SAMD9Q5K651 1589 aa18.14■□□□□ 0.49
RNF4-222ENST00000541204 GRIN2BQ13224 1484 aa18.14■□□□□ 0.49
RNF4-222ENST00000541204 SETD5Q9C0A6 1442 aa18.12■□□□□ 0.49
RNF4-222ENST00000541204 IFT140Q96RY7 1462 aa18.11■□□□□ 0.49
RNF4-222ENST00000541204 ADAMTS12P58397 1594 aa18.1■□□□□ 0.49
RNF4-222ENST00000541204 FBLN2P98095 1184 aa18.1■□□□□ 0.49
RNF4-222ENST00000541204 WDR62O43379 1518 aa18.08■□□□□ 0.49
RNF4-222ENST00000541204 IQGAP2Q13576 1575 aa18.07■□□□□ 0.48
RNF4-222ENST00000541204 FGD6Q6ZV73 1430 aa18.06■□□□□ 0.48
RNF4-222ENST00000541204 LRRIQ1Q96JM4 1722 aa18.05■□□□□ 0.48
RNF4-222ENST00000541204 SIN3AQ96ST3 1273 aa18.05■□□□□ 0.48
RNF4-222ENST00000541204 NCOA2Q15596 1464 aa18.03■□□□□ 0.48
RNF4-222ENST00000541204 CHMP7Q8WUX9 453 aaPredicted RBP18.02■□□□□ 0.47
RNF4-222ENST00000541204 MAPKBP1O60336 1514 aa18.01■□□□□ 0.47
RNF4-222ENST00000541204 EIF4G3O43432 1585 aaKnown RBP17.99■□□□□ 0.47
RNF4-222ENST00000541204 MAGI3Q5TCQ9 1506 aa17.99■□□□□ 0.47
RNF4-222ENST00000541204 PTPRKQ15262 1439 aa17.98■□□□□ 0.47
RNF4-222ENST00000541204 CHIC2Q9UKJ5 165 aa17.98■□□□□ 0.47
RNF4-222ENST00000541204 CDK13Q14004 1512 aaKnown RBP17.98■□□□□ 0.47
RNF4-222ENST00000541204 MYOM3Q5VTT5 1437 aa17.97■□□□□ 0.47
RNF4-222ENST00000541204 GRIN2AQ12879 1464 aa17.95■□□□□ 0.46
RNF4-222ENST00000541204 EPRSP07814 1512 aaKnown RBP17.95■□□□□ 0.46
RNF4-222ENST00000541204 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.94■□□□□ 0.46
RNF4-222ENST00000541204 EHBP1L1Q8N3D4 1523 aa17.94■□□□□ 0.46
RNF4-222ENST00000541204 SUPT16HQ9Y5B9 1047 aaKnown RBP17.94■□□□□ 0.46
RNF4-222ENST00000541204 KIAA0586Q9BVV6 1533 aa17.94■□□□□ 0.46
RNF4-222ENST00000541204 RRP7BPQ9NSQ0 103 aa17.93■□□□□ 0.46
RNF4-222ENST00000541204 THOC2Q8NI27 1593 aaKnown RBP17.93■□□□□ 0.46
RNF4-222ENST00000541204 CCDC18Q5T9S5 1454 aa17.93■□□□□ 0.46
RNF4-222ENST00000541204 SUPT6HQ7KZ85 1726 aaKnown RBP17.93■□□□□ 0.46
RNF4-222ENST00000541204 HECW1Q76N89 1606 aa17.92■□□□□ 0.46
RNF4-222ENST00000541204 UGGT2Q9NYU1 1516 aa17.91■□□□□ 0.46
RNF4-222ENST00000541204 DISP1Q96F81 1524 aa17.9■□□□□ 0.46
RNF4-222ENST00000541204 MYT1Q01538 1121 aa17.9■□□□□ 0.46
RNF4-222ENST00000541204 KCNH8Q96L42 1107 aa17.89■□□□□ 0.45
RNF4-222ENST00000541204 PTPN23Q9H3S7 1636 aa17.86■□□□□ 0.45
RNF4-222ENST00000541204 KIAA0556O60303 1618 aa17.86■□□□□ 0.45
RNF4-222ENST00000541204 HFM1A2PYH4 1435 aa17.85■□□□□ 0.45
RNF4-222ENST00000541204 MAGI1Q96QZ7 1491 aaPredicted RBP17.85■□□□□ 0.45
RNF4-222ENST00000541204 SYNJ2O15056 1496 aa17.84■□□□□ 0.45
RNF4-222ENST00000541204 NAIPQ13075 1403 aa17.84■□□□□ 0.45
RNF4-222ENST00000541204 JPH4Q96JJ6 628 aa17.84■□□□□ 0.45
RNF4-222ENST00000541204 ARHGEF11O15085 1522 aa17.83■□□□□ 0.45
RNF4-222ENST00000541204 HIRIP3Q9BW71 556 aaPredicted RBP17.83■□□□□ 0.45
RNF4-222ENST00000541204 CEP170Q5SW79 1584 aa17.83■□□□□ 0.45
RNF4-222ENST00000541204 TRIM52Q96A61 297 aa17.82■□□□□ 0.44
RNF4-222ENST00000541204 ZNF644Q9H582 1327 aaPredicted RBP17.82■□□□□ 0.44
RNF4-222ENST00000541204 NUP153P49790 1475 aaKnown RBP17.82■□□□□ 0.44
RNF4-222ENST00000541204 DDX10Q13206 875 aaKnown RBP17.8■□□□□ 0.44
RNF4-222ENST00000541204 PLB1Q6P1J6 1458 aa17.8■□□□□ 0.44
RNF4-222ENST00000541204 CDK11AQ9UQ88 783 aaPredicted RBP17.79■□□□□ 0.44
RNF4-222ENST00000541204 UACAQ9BZF9 1416 aa17.78■□□□□ 0.44
RNF4-222ENST00000541204 PRG4Q92954 1404 aaPredicted RBP17.77■□□□□ 0.43
RNF4-222ENST00000541204 ZNF777Q9ULD5 760 aaPredicted RBP17.76■□□□□ 0.43
RNF4-222ENST00000541204 RAPGEF6Q8TEU7 1601 aa17.76■□□□□ 0.43
RNF4-222ENST00000541204 TONSLQ96HA7 1378 aa17.76■□□□□ 0.43
RNF4-222ENST00000541204 PPP1R15AO75807 674 aaPredicted RBP17.75■□□□□ 0.43
RNF4-222ENST00000541204 TCOF1Q13428 1488 aaKnown RBP17.75■□□□□ 0.43
RNF4-222ENST00000541204 CARMIL2Q6F5E8 1435 aa17.73■□□□□ 0.43
RNF4-222ENST00000541204 MIA2Q96PC5 1412 aa17.73■□□□□ 0.43
RNF4-222ENST00000541204 FOXD1Q16676 465 aa17.73■□□□□ 0.43
RNF4-222ENST00000541204 NUP160Q12769 1436 aa17.72■□□□□ 0.43
RNF4-222ENST00000541204 TIMELESSQ9UNS1 1208 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms