RNA–Protein interactions for RNA: ENST00000540865.5

SNHG1-214, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 784 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-214ENST00000540865 SMARCA4P51532 1647 aa9.23□□□□□ -0.93
SNHG1-214ENST00000540865 SSUH2Q9Y2M2 353 aa9.19□□□□□ -0.94
SNHG1-214ENST00000540865 GABBR2O75899 941 aa9.18□□□□□ -0.94
SNHG1-214ENST00000540865 ZNF692Q9BU19 519 aaPredicted RBP9.18□□□□□ -0.94
SNHG1-214ENST00000540865 PEG3Q9GZU2 1588 aa9.18□□□□□ -0.94
SNHG1-214ENST00000540865 BAZ1AQ9NRL2 1556 aaPredicted RBP9.18□□□□□ -0.94
SNHG1-214ENST00000540865 MRC2Q9UBG0 1479 aa9.17□□□□□ -0.94
SNHG1-214ENST00000540865 CADPSQ9ULU8 1353 aa9.17□□□□□ -0.94
SNHG1-214ENST00000540865 CHADLQ6NUI6 762 aa9.17□□□□□ -0.94
SNHG1-214ENST00000540865 KIF21AQ7Z4S6 1674 aa9.13□□□□□ -0.95
SNHG1-214ENST00000540865 LHX8Q68G74 356 aa9.13□□□□□ -0.95
SNHG1-214ENST00000540865 WDR62O43379 1518 aa9.13□□□□□ -0.95
SNHG1-214ENST00000540865 FKBP8Q14318 412 aa9.09□□□□□ -0.95
SNHG1-214ENST00000540865 MROH2BQ7Z745 1585 aa9.07□□□□□ -0.96
SNHG1-214ENST00000540865 PRR29P0C7W0 189 aa9.06□□□□□ -0.96
SNHG1-214ENST00000540865 CEP164Q9UPV0 1460 aa9.06□□□□□ -0.96
SNHG1-214ENST00000540865 FANCD2Q9BXW9 1451 aa9.03□□□□□ -0.96
SNHG1-214ENST00000540865 CD44P16070 742 aaKnown RBP9.01□□□□□ -0.97
SNHG1-214ENST00000540865 POTEIP0CG38 1075 aa9□□□□□ -0.97
SNHG1-214ENST00000540865 RIMBP3CA6NJZ7 1639 aa8.99□□□□□ -0.97
SNHG1-214ENST00000540865 RIMBP3BA6NNM3 1639 aa8.99□□□□□ -0.97
SNHG1-214ENST00000540865 RIMBP3Q9UFD9 1639 aa8.99□□□□□ -0.97
SNHG1-214ENST00000540865 CFTRP13569 1480 aa8.99□□□□□ -0.97
SNHG1-214ENST00000540865 SPDYE4A6NLX3 237 aa8.98□□□□□ -0.97
SNHG1-214ENST00000540865 ARHGEF11O15085 1522 aa8.97□□□□□ -0.97
SNHG1-214ENST00000540865 CYB5RLQ6IPT4 315 aa8.97□□□□□ -0.97
SNHG1-214ENST00000540865 URB2Q14146 1524 aaKnown RBP8.96□□□□□ -0.97
SNHG1-214ENST00000540865 FARP1Q9Y4F1 1045 aaPredicted RBP8.96□□□□□ -0.98
SNHG1-214ENST00000540865 IFT140Q96RY7 1462 aa8.92□□□□□ -0.98
SNHG1-214ENST00000540865 ZNF608Q9ULD9 1512 aaPredicted RBP8.9□□□□□ -0.98
SNHG1-214ENST00000540865 WIZO95785 1651 aa8.89□□□□□ -0.99
SNHG1-214ENST00000540865 ARAP1Q96P48 1450 aa8.88□□□□□ -0.99
SNHG1-214ENST00000540865 DCBLD2Q96PD2 775 aa8.87□□□□□ -0.99
SNHG1-214ENST00000540865 PLSCR2Q9NRY7 297 aa8.87□□□□□ -0.99
SNHG1-214ENST00000540865 RSF1Q96T23 1441 aaPredicted RBP8.87□□□□□ -0.99
SNHG1-214ENST00000540865 ZNF579Q8NAF0 562 aaKnown RBP8.84□□□□□ -0.99
SNHG1-214ENST00000540865 CLCN6P51797 869 aa8.83□□□□□ -1
SNHG1-214ENST00000540865 ZRANB1Q9UGI0 708 aa8.83□□□□□ -1
SNHG1-214ENST00000540865 TOP2AP11388 1531 aaKnown RBP8.82□□□□□ -1
SNHG1-214ENST00000540865 ABCC8Q09428 1581 aa8.82□□□□□ -1
SNHG1-214ENST00000540865 TOPBP1Q92547 1522 aa8.81□□□□□ -1
SNHG1-214ENST00000540865 PROM2Q8N271 834 aa8.81□□□□□ -1
SNHG1-214ENST00000540865 AQRO60306 1485 aaKnown RBP eCLIP8.8□□□□□ -13e-14■■■■■ 47.5
SNHG1-214ENST00000540865 GALR2O43603 387 aaPredicted RBP8.79□□□□□ -1
SNHG1-214ENST00000540865 EIF4G3O43432 1585 aaKnown RBP8.78□□□□□ -1
SNHG1-214ENST00000540865 CREBZFQ9NS37 354 aa8.78□□□□□ -1
SNHG1-214ENST00000540865 CCDC88BA6NC98 1476 aa8.75□□□□□ -1.01
SNHG1-214ENST00000540865 DNMBPQ6XZF7 1577 aa8.74□□□□□ -1.01
SNHG1-214ENST00000540865 CHMP7Q8WUX9 453 aaPredicted RBP8.73□□□□□ -1.01
SNHG1-214ENST00000540865 OTUD5Q96G74 571 aa8.73□□□□□ -1.01
SNHG1-214ENST00000540865 TARBP1Q13395 1621 aaKnown RBP8.72□□□□□ -1.01
SNHG1-214ENST00000540865 CHD1O14646 1710 aa8.72□□□□□ -1.01
SNHG1-214ENST00000540865 TDRD9Q8NDG6 1382 aaKnown RBP8.72□□□□□ -1.01
SNHG1-214ENST00000540865 POLA1P09884 1462 aaPredicted RBP8.71□□□□□ -1.01
SNHG1-214ENST00000540865 CLASP1Q7Z460 1538 aa8.71□□□□□ -1.01
SNHG1-214ENST00000540865 POTEB2H3BUK9 544 aa8.71□□□□□ -1.02
SNHG1-214ENST00000540865 PHF12Q96QT6 1004 aa8.71□□□□□ -1.02
SNHG1-214ENST00000540865 PRDM2Q13029 1718 aa8.7□□□□□ -1.02
SNHG1-214ENST00000540865 SOGA1O94964 1423 aa8.7□□□□□ -1.02
SNHG1-214ENST00000540865 SNAPC4Q5SXM2 1469 aa8.69□□□□□ -1.02
SNHG1-214ENST00000540865 RAD54L2Q9Y4B4 1467 aa8.68□□□□□ -1.02
SNHG1-214ENST00000540865 SYNJ1O43426 1573 aa8.68□□□□□ -1.02
SNHG1-214ENST00000540865 GAPVD1Q14C86 1478 aa8.67□□□□□ -1.02
SNHG1-214ENST00000540865 MAGI1Q96QZ7 1491 aaPredicted RBP8.67□□□□□ -1.02
SNHG1-214ENST00000540865 STAG3Q9UJ98 1225 aa8.67□□□□□ -1.02
SNHG1-214ENST00000540865 PAK3O75914 559 aaPredicted RBP8.66□□□□□ -1.02
SNHG1-214ENST00000540865 FBXO3Q9UK99 471 aa8.65□□□□□ -1.02
SNHG1-214ENST00000540865 WDR97A6NE52 1622 aa8.65□□□□□ -1.03
SNHG1-214ENST00000540865 SYNJ2O15056 1496 aa8.64□□□□□ -1.03
SNHG1-214ENST00000540865 GRIN2BQ13224 1484 aa8.64□□□□□ -1.03
SNHG1-214ENST00000540865 POTEMA6NI47 508 aa8.64□□□□□ -1.03
SNHG1-214ENST00000540865 PELP1Q8IZL8 1130 aaKnown RBP8.63□□□□□ -1.03
SNHG1-214ENST00000540865 POTEGQ6S5H5 508 aa8.61□□□□□ -1.03
SNHG1-214ENST00000540865 FGD5Q6ZNL6 1462 aa8.6□□□□□ -1.03
SNHG1-214ENST00000540865 MNX1P50219 401 aaPredicted RBP8.59□□□□□ -1.03
SNHG1-214ENST00000540865 VASPP50552 380 aaPredicted RBP8.59□□□□□ -1.03
SNHG1-214ENST00000540865 ILDR1Q86SU0 546 aaPredicted RBP8.58□□□□□ -1.04
SNHG1-214ENST00000540865 METRNQ9UJH8 293 aa8.58□□□□□ -1.04
SNHG1-214ENST00000540865 MS4A3Q96HJ5 214 aa8.57□□□□□ -1.04
SNHG1-214ENST00000540865 NPM1P06748 294 aaKnown RBP eCLIP8.56□□□□□ -1.04
SNHG1-214ENST00000540865 POTEJP0CG39 1038 aa8.54□□□□□ -1.04
SNHG1-214ENST00000540865 ASTLQ6HA08 431 aaPredicted RBP8.54□□□□□ -1.04
SNHG1-214ENST00000540865 CUX1P39880 1505 aa8.54□□□□□ -1.04
SNHG1-214ENST00000540865 KDM4FA0A1W2PPD8 638 aa8.53□□□□□ -1.04
SNHG1-214ENST00000540865 ATMINO43313 823 aaPredicted RBP8.53□□□□□ -1.04
SNHG1-214ENST00000540865 ERCC6L2Q5T890 1561 aa8.52□□□□□ -1.04
SNHG1-214ENST00000540865 FAM69CQ0P6D2 419 aa8.52□□□□□ -1.05
SNHG1-214ENST00000540865 IFNLR1Q8IU57 520 aaPredicted RBP8.52□□□□□ -1.05
SNHG1-214ENST00000540865 NUP160Q12769 1436 aa8.52□□□□□ -1.05
SNHG1-214ENST00000540865 GRIN2AQ12879 1464 aa8.51□□□□□ -1.05
SNHG1-214ENST00000540865 ABCA10Q8WWZ4 1543 aa8.51□□□□□ -1.05
SNHG1-214ENST00000540865 MIER1Q8N108 512 aa8.51□□□□□ -1.05
SNHG1-214ENST00000540865 CEP170Q5SW79 1584 aa8.5□□□□□ -1.05
SNHG1-214ENST00000540865 PLCD3Q8N3E9 789 aa8.5□□□□□ -1.05
SNHG1-214ENST00000540865 SLC39A7Q92504 469 aa8.5□□□□□ -1.05
SNHG1-214ENST00000540865 C7P10643 843 aa8.49□□□□□ -1.05
SNHG1-214ENST00000540865 ABCC10Q5T3U5 1492 aa8.49□□□□□ -1.05
SNHG1-214ENST00000540865 FHAD1B1AJZ9 1412 aa8.47□□□□□ -1.05
SNHG1-214ENST00000540865 LCE2DQ5TA82 110 aaPredicted RBP8.47□□□□□ -1.05
SNHG1-214ENST00000540865 TSPYL2Q9H2G4 693 aaPredicted RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms