RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 FAM212AQ96EL1 285 aa11.33□□□□□ -0.6
USP28-207ENST00000538475 CLCN6P51797 869 aa11.32□□□□□ -0.6
USP28-207ENST00000538475 PHF12Q96QT6 1004 aa11.32□□□□□ -0.6
USP28-207ENST00000538475 PELP1Q8IZL8 1130 aaKnown RBP11.31□□□□□ -0.6
USP28-207ENST00000538475 DCAF8Q5TAQ9 597 aa11.3□□□□□ -0.6
USP28-207ENST00000538475 SPOCK2Q92563 424 aa11.3□□□□□ -0.6
USP28-207ENST00000538475 CCDC61Q9Y6R9 512 aa11.27□□□□□ -0.61
USP28-207ENST00000538475 LHX8Q68G74 356 aa11.25□□□□□ -0.61
USP28-207ENST00000538475 GSE1Q14687 1217 aa11.23□□□□□ -0.61
USP28-207ENST00000538475 CIZ1Q9ULV3 898 aaPredicted RBP11.21□□□□□ -0.61
USP28-207ENST00000538475 GALR2O43603 387 aaPredicted RBP11.2□□□□□ -0.62
USP28-207ENST00000538475 POTEIP0CG38 1075 aa11.19□□□□□ -0.62
USP28-207ENST00000538475 KIF12Q96FN5 646 aa11.19□□□□□ -0.62
USP28-207ENST00000538475 HRCP23327 699 aa11.18□□□□□ -0.62
USP28-207ENST00000538475 DCBLD2Q96PD2 775 aa11.18□□□□□ -0.62
USP28-207ENST00000538475 MAP3K13O43283 966 aa11.16□□□□□ -0.62
USP28-207ENST00000538475 PYGBP11216 843 aa11.16□□□□□ -0.62
USP28-207ENST00000538475 MS4A3Q96HJ5 214 aa11.16□□□□□ -0.62
USP28-207ENST00000538475 PCDHB13Q9Y5F0 798 aa11.14□□□□□ -0.63
USP28-207ENST00000538475 SGIP1Q9BQI5 828 aa11.1□□□□□ -0.63
USP28-207ENST00000538475 MYT1Q01538 1121 aa11.06□□□□□ -0.64
USP28-207ENST00000538475 IFNL1Q8IU54 200 aa11.05□□□□□ -0.64
USP28-207ENST00000538475 CHRM1P11229 460 aaPredicted RBP11.04□□□□□ -0.64
USP28-207ENST00000538475 TRIM41Q8WV44 630 aa11.03□□□□□ -0.64
USP28-207ENST00000538475 ZNF467Q7Z7K2 595 aaPredicted RBP11.01□□□□□ -0.65
USP28-207ENST00000538475 PCDHB8Q9UN66 801 aa11.01□□□□□ -0.65
USP28-207ENST00000538475 TRPC6Q9Y210 931 aa11.01□□□□□ -0.65
USP28-207ENST00000538475 TIE1P35590 1138 aa10.99□□□□□ -0.65
USP28-207ENST00000538475 ATMINO43313 823 aaPredicted RBP10.98□□□□□ -0.65
USP28-207ENST00000538475 ASTLQ6HA08 431 aaPredicted RBP10.98□□□□□ -0.65
USP28-207ENST00000538475 BMP2KQ9NSY1 1161 aaPredicted RBP10.98□□□□□ -0.65
USP28-207ENST00000538475 TMEM106CQ9BVX2 250 aa10.95□□□□□ -0.66
USP28-207ENST00000538475 TTLL13PA6NNM8 815 aa10.94□□□□□ -0.66
USP28-207ENST00000538475 ATN1P54259 1190 aaPredicted RBP10.94□□□□□ -0.66
USP28-207ENST00000538475 ECM2O94769 699 aaPredicted RBP10.92□□□□□ -0.66
USP28-207ENST00000538475 SLC39A7Q92504 469 aa10.9□□□□□ -0.66
USP28-207ENST00000538475 PSEN1P49768 467 aa10.89□□□□□ -0.67
USP28-207ENST00000538475 TRIM35Q9UPQ4 493 aa10.89□□□□□ -0.67
USP28-207ENST00000538475 PDAP1Q13442 181 aaKnown RBP10.88□□□□□ -0.67
USP28-207ENST00000538475 C7P10643 843 aa10.87□□□□□ -0.67
USP28-207ENST00000538475 PKD2Q13563 968 aa10.87□□□□□ -0.67
USP28-207ENST00000538475 METRNQ9UJH8 293 aa10.87□□□□□ -0.67
USP28-207ENST00000538475 DCAF1Q9Y4B6 1507 aa10.86□□□□□ -0.67
USP28-207ENST00000538475 RIOK3O14730 519 aaKnown RBP10.86□□□□□ -0.67
USP28-207ENST00000538475 GOLGA2Q08379 1002 aa10.85□□□□□ -0.67
USP28-207ENST00000538475 POTEB2H3BUK9 544 aa10.82□□□□□ -0.68
USP28-207ENST00000538475 SEC24BO95487 1268 aa10.82□□□□□ -0.68
USP28-207ENST00000538475 RNF25Q96BH1 459 aaPredicted RBP10.82□□□□□ -0.68
USP28-207ENST00000538475 OTUD5Q96G74 571 aa10.82□□□□□ -0.68
USP28-207ENST00000538475 TAOK2Q9UL54 1235 aa10.82□□□□□ -0.68
USP28-207ENST00000538475 VGFO15240 615 aaPredicted RBP10.8□□□□□ -0.68
USP28-207ENST00000538475 IER5LQ5T953 404 aa10.8□□□□□ -0.68
USP28-207ENST00000538475 MKRN3Q13064 507 aaKnown RBP10.79□□□□□ -0.68
USP28-207ENST00000538475 CCDC180Q9P1Z9 1646 aa10.78□□□□□ -0.68
USP28-207ENST00000538475 RGL2O15211 777 aa10.77□□□□□ -0.69
USP28-207ENST00000538475 CABP2Q9NPB3 220 aa10.77□□□□□ -0.69
USP28-207ENST00000538475 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.76□□□□□ -0.69
USP28-207ENST00000538475 ZEB1P37275 1124 aaPredicted RBP10.76□□□□□ -0.69
USP28-207ENST00000538475 ZFP91Q96JP5 570 aaPredicted RBP10.76□□□□□ -0.69
USP28-207ENST00000538475 PLCG2P16885 1265 aa10.75□□□□□ -0.69
USP28-207ENST00000538475 COLQQ9Y215 455 aaPredicted RBP10.72□□□□□ -0.69
USP28-207ENST00000538475 OCEL1Q9H607 264 aa10.71□□□□□ -0.69
USP28-207ENST00000538475 POTEFA5A3E0 1075 aa10.7□□□□□ -0.7
USP28-207ENST00000538475 STK25O00506 426 aa10.69□□□□□ -0.7
USP28-207ENST00000538475 IRX5P78411 483 aaPredicted RBP10.69□□□□□ -0.7
USP28-207ENST00000538475 BCL11BQ9C0K0 894 aaPredicted RBP10.69□□□□□ -0.7
USP28-207ENST00000538475 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.69□□□□□ -0.73e-6■□□□□ 9.2
USP28-207ENST00000538475 STK24Q9Y6E0 443 aa10.69□□□□□ -0.7
USP28-207ENST00000538475 EFCAB3Q8N7B9 438 aa10.67□□□□□ -0.7
USP28-207ENST00000538475 PLSCR2Q9NRY7 297 aa10.67□□□□□ -0.7
USP28-207ENST00000538475 MAMSTRQ6ZN01 415 aa10.66□□□□□ -0.7
USP28-207ENST00000538475 PCGF6Q9BYE7 350 aa10.66□□□□□ -0.7
USP28-207ENST00000538475 MYO15BQ96JP2 1530 aa10.65□□□□□ -0.7
USP28-207ENST00000538475 DCAF8L2P0C7V8 631 aa10.64□□□□□ -0.71
USP28-207ENST00000538475 AMER1Q5JTC6 1135 aaPredicted RBP10.64□□□□□ -0.71
USP28-207ENST00000538475 POTEJP0CG39 1038 aa10.63□□□□□ -0.71
USP28-207ENST00000538475 SCUBE2Q9NQ36 999 aa10.63□□□□□ -0.71
USP28-207ENST00000538475 POTEMA6NI47 508 aa10.62□□□□□ -0.71
USP28-207ENST00000538475 SOX12O15370 315 aa10.6□□□□□ -0.71
USP28-207ENST00000538475 PDCD7Q8N8D1 485 aaKnown RBP10.6□□□□□ -0.71
USP28-207ENST00000538475 ZCCHC6Q5VYS8 1495 aaKnown RBP10.6□□□□□ -0.71
USP28-207ENST00000538475 TRIM26Q12899 539 aaPredicted RBP10.59□□□□□ -0.71
USP28-207ENST00000538475 CHGAP10645 457 aaKnown RBP10.58□□□□□ -0.72
USP28-207ENST00000538475 POTEGQ6S5H5 508 aa10.58□□□□□ -0.72
USP28-207ENST00000538475 L3MBTL3Q96JM7 780 aaPredicted RBP10.58□□□□□ -0.72
USP28-207ENST00000538475 G3V3G9 751 aa10.57□□□□□ -0.72
USP28-207ENST00000538475 RTN4Q9NQC3 1192 aaKnown RBP10.56□□□□□ -0.72
USP28-207ENST00000538475 ILDR1Q86SU0 546 aaPredicted RBP10.55□□□□□ -0.72
USP28-207ENST00000538475 PHF8Q9UPP1 1060 aa10.55□□□□□ -0.72
USP28-207ENST00000538475 SUPT5HO00267 1087 aaKnown RBP10.54□□□□□ -0.72
USP28-207ENST00000538475 NLRP6P59044 892 aa10.54□□□□□ -0.72
USP28-207ENST00000538475 DPY19L2Q6NUT2 758 aa10.54□□□□□ -0.72
USP28-207ENST00000538475 HS6ST3Q8IZP7 471 aa10.54□□□□□ -0.72
USP28-207ENST00000538475 PPARGC1BQ86YN6 1023 aaKnown RBP10.53□□□□□ -0.72
USP28-207ENST00000538475 C3orf67Q6ZVT6 689 aa10.52□□□□□ -0.73
USP28-207ENST00000538475 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.51□□□□□ -0.73
USP28-207ENST00000538475 BOLA1Q9Y3E2 137 aa10.5□□□□□ -0.73
USP28-207ENST00000538475 TTBK1Q5TCY1 1321 aaPredicted RBP10.49□□□□□ -0.73
USP28-207ENST00000538475 SLAIN1Q8ND83 568 aa10.48□□□□□ -0.73
USP28-207ENST00000538475 MFRPQ9BY79 579 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms