RNA–Protein interactions for RNA: ENST00000537824.2

CSMD1-215, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 13,512 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-215ENST00000537824 RBM19Q9Y4C8 960 aaKnown RBP7.48□□□□□ -1.21
CSMD1-215ENST00000537824 L1TD1Q5T7N2 865 aaKnown RBP7.47□□□□□ -1.21
CSMD1-215ENST00000537824 MRS2Q9HD23 443 aa7.47□□□□□ -1.21
CSMD1-215ENST00000537824 VSIG10Q8N0Z9 540 aa7.47□□□□□ -1.21
CSMD1-215ENST00000537824 PNNQ9H307 717 aaKnown RBP7.46□□□□□ -1.21
CSMD1-215ENST00000537824 A0A0U1RQG5 324 aaPredicted RBP7.46□□□□□ -1.22
CSMD1-215ENST00000537824 PPP4R2Q9NY27 417 aa7.45□□□□□ -1.22
CSMD1-215ENST00000537824 TPRNQ4KMQ1 711 aa7.44□□□□□ -1.22
CSMD1-215ENST00000537824 TMC1Q8TDI8 760 aa7.43□□□□□ -1.22
CSMD1-215ENST00000537824 HSP90AA2PQ14568 343 aaPredicted RBP7.43□□□□□ -1.22
CSMD1-215ENST00000537824 TSHZ2Q9NRE2 1034 aa7.43□□□□□ -1.22
CSMD1-215ENST00000537824 MYO15BQ96JP2 1530 aa7.43□□□□□ -1.22
CSMD1-215ENST00000537824 RSPH6AQ9H0K4 717 aa7.42□□□□□ -1.22
CSMD1-215ENST00000537824 CHAF1AQ13111 956 aaPredicted RBP7.42□□□□□ -1.22
CSMD1-215ENST00000537824 B4GALNT3Q6L9W6 998 aa7.42□□□□□ -1.22
CSMD1-215ENST00000537824 TIMELESSQ9UNS1 1208 aa7.42□□□□□ -1.22
CSMD1-215ENST00000537824 SENP3-EIF4A1A0A087X0R7 540 aa7.4□□□□□ -1.22
CSMD1-215ENST00000537824 TNNT3P45378 269 aaPredicted RBP7.4□□□□□ -1.22
CSMD1-215ENST00000537824 MSNP26038 577 aaKnown RBP7.4□□□□□ -1.22
CSMD1-215ENST00000537824 PKNOX2Q96KN3 472 aa7.39□□□□□ -1.23
CSMD1-215ENST00000537824 HIRIP3Q9BW71 556 aaPredicted RBP7.39□□□□□ -1.23
CSMD1-215ENST00000537824 GOLGA4Q13439 2230 aaKnown RBP7.38□□□□□ -1.23
CSMD1-215ENST00000537824 MYH16Q9H6N6 1097 aa7.38□□□□□ -1.23
CSMD1-215ENST00000537824 RGS3P49796 1198 aa7.38□□□□□ -1.23
CSMD1-215ENST00000537824 ZBTB7CA1YPR0 619 aa7.38□□□□□ -1.23
CSMD1-215ENST00000537824 HSP90AB1P08238 724 aaKnown RBP7.37□□□□□ -1.23
CSMD1-215ENST00000537824 PODXL2Q9NZ53 605 aa7.37□□□□□ -1.23
CSMD1-215ENST00000537824 WDR43Q15061 677 aaKnown RBP eCLIP7.35□□□□□ -1.23
CSMD1-215ENST00000537824 PLCB2Q00722 1185 aa7.34□□□□□ -1.23
CSMD1-215ENST00000537824 ZRSR1Q15695 479 aaKnown RBP7.34□□□□□ -1.23
CSMD1-215ENST00000537824 GZF1Q9H116 711 aaPredicted RBP7.34□□□□□ -1.23
CSMD1-215ENST00000537824 SPRYD3Q8NCJ5 442 aa7.34□□□□□ -1.24
CSMD1-215ENST00000537824 MYO10Q9HD67 2058 aa7.33□□□□□ -1.24
CSMD1-215ENST00000537824 KIAA2012Q0VF49 1180 aa7.32□□□□□ -1.24
CSMD1-215ENST00000537824 GOLGA6L6A8MZA4 724 aa7.32□□□□□ -1.24
CSMD1-215ENST00000537824 ANO8Q9HCE9 1232 aaPredicted RBP7.32□□□□□ -1.24
CSMD1-215ENST00000537824 HSCBQ8IWL3 235 aa7.32□□□□□ -1.24
CSMD1-215ENST00000537824 DRC7Q8IY82 874 aa7.31□□□□□ -1.24
CSMD1-215ENST00000537824 NRDCO43847 1150 aa7.3□□□□□ -1.24
CSMD1-215ENST00000537824 IPO9Q96P70 1041 aaKnown RBP7.29□□□□□ -1.24
CSMD1-215ENST00000537824 FTSJ3Q8IY81 847 aaKnown RBP7.28□□□□□ -1.24
CSMD1-215ENST00000537824 GOLGA6L3A6NEY3 463 aa7.28□□□□□ -1.24
CSMD1-215ENST00000537824 CASC1Q6TDU7 716 aa7.28□□□□□ -1.24
CSMD1-215ENST00000537824 SLKQ9H2G2 1235 aaPredicted RBP7.28□□□□□ -1.24
CSMD1-215ENST00000537824 PTMSP20962 102 aa7.27□□□□□ -1.25
CSMD1-215ENST00000537824 GBP4Q96PP9 640 aa7.26□□□□□ -1.25
CSMD1-215ENST00000537824 ZNF771Q7L3S4 317 aaPredicted RBP7.26□□□□□ -1.25
CSMD1-215ENST00000537824 P3H3Q8IVL6 736 aa7.26□□□□□ -1.25
CSMD1-215ENST00000537824 ARID3CA6NKF2 412 aa7.25□□□□□ -1.25
CSMD1-215ENST00000537824 CALRP27797 417 aaKnown RBP7.24□□□□□ -1.25
CSMD1-215ENST00000537824 EIF4G2P78344 907 aaKnown RBP eCLIP7.24□□□□□ -1.25
CSMD1-215ENST00000537824 GOLGA6L4A6NEF3 574 aa7.23□□□□□ -1.25
CSMD1-215ENST00000537824 KDM2AQ9Y2K7 1162 aa7.23□□□□□ -1.25
CSMD1-215ENST00000537824 FAM13BQ9NYF5 915 aa7.22□□□□□ -1.25
CSMD1-215ENST00000537824 GOLGA6L1Q8N7Z2 621 aa7.22□□□□□ -1.25
CSMD1-215ENST00000537824 TCERG1O14776 1098 aaKnown RBP7.21□□□□□ -1.26
CSMD1-215ENST00000537824 USP35Q9P2H5 1018 aa7.2□□□□□ -1.26
CSMD1-215ENST00000537824 APPP05067 770 aa7.2□□□□□ -1.26
CSMD1-215ENST00000537824 FANCIQ9NVI1 1328 aa7.2□□□□□ -1.26
CSMD1-215ENST00000537824 SETQ01105 290 aaPredicted RBP7.2□□□□□ -1.26
CSMD1-215ENST00000537824 BRPF3Q9ULD4 1205 aa7.19□□□□□ -1.26
CSMD1-215ENST00000537824 NOC3LQ8WTT2 800 aaKnown RBP7.19□□□□□ -1.26
CSMD1-215ENST00000537824 GSE1Q14687 1217 aa7.19□□□□□ -1.26
CSMD1-215ENST00000537824 MYH10P35580 1976 aa7.19□□□□□ -1.26
CSMD1-215ENST00000537824 ZNF777Q9ULD5 760 aaPredicted RBP7.19□□□□□ -1.26
CSMD1-215ENST00000537824 TAOK2Q9UL54 1235 aa7.19□□□□□ -1.26
CSMD1-215ENST00000537824 TULP1O00294 542 aaPredicted RBP7.19□□□□□ -1.26
CSMD1-215ENST00000537824 IL27Q8NEV9 243 aa7.18□□□□□ -1.26
CSMD1-215ENST00000537824 MICAL3Q7RTP6 2002 aa7.18□□□□□ -1.26
CSMD1-215ENST00000537824 FGD1P98174 961 aa7.18□□□□□ -1.26
CSMD1-215ENST00000537824 FRAT1Q92837 279 aaPredicted RBP7.18□□□□□ -1.26
CSMD1-215ENST00000537824 CCER2I3L3R5 266 aa7.17□□□□□ -1.26
CSMD1-215ENST00000537824 SYAP1Q96A49 352 aaPredicted RBP7.17□□□□□ -1.26
CSMD1-215ENST00000537824 CHIC2Q9UKJ5 165 aa7.17□□□□□ -1.26
CSMD1-215ENST00000537824 NAP1L2Q9ULW6 460 aaPredicted RBP7.17□□□□□ -1.26
CSMD1-215ENST00000537824 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.17□□□□□ -1.26
CSMD1-215ENST00000537824 KCNJ4P48050 445 aa7.16□□□□□ -1.26
CSMD1-215ENST00000537824 CLIP1P30622 1438 aa7.16□□□□□ -1.26
CSMD1-215ENST00000537824 MYO18AQ92614 2054 aaKnown RBP7.15□□□□□ -1.26
CSMD1-215ENST00000537824 DDX11L8A8MPP1 907 aa7.14□□□□□ -1.27
CSMD1-215ENST00000537824 FOXD4L1Q9NU39 408 aa7.14□□□□□ -1.27
CSMD1-215ENST00000537824 CALD1Q05682 793 aaKnown RBP7.14□□□□□ -1.27
CSMD1-215ENST00000537824 CHGAP10645 457 aaKnown RBP7.14□□□□□ -1.27
CSMD1-215ENST00000537824 MAPK8IP2Q13387 824 aaPredicted RBP7.14□□□□□ -1.27
CSMD1-215ENST00000537824 AK9Q5TCS8 1911 aa7.13□□□□□ -1.27
CSMD1-215ENST00000537824 CEP162Q5TB80 1403 aa7.13□□□□□ -1.27
CSMD1-215ENST00000537824 RCAN3Q9UKA8 241 aa7.13□□□□□ -1.27
CSMD1-215ENST00000537824 SLC4A3P48751 1232 aa7.13□□□□□ -1.27
CSMD1-215ENST00000537824 PHF14O94880 888 aa7.13□□□□□ -1.27
CSMD1-215ENST00000537824 MAP7D2Q96T17 732 aa7.12□□□□□ -1.27
CSMD1-215ENST00000537824 SCRIBQ14160 1630 aa7.12□□□□□ -1.27
CSMD1-215ENST00000537824 FOXD4L5Q5VV16 416 aaPredicted RBP7.12□□□□□ -1.27
CSMD1-215ENST00000537824 FOXD4L4Q8WXT5 416 aaPredicted RBP7.12□□□□□ -1.27
CSMD1-215ENST00000537824 HTATSF1O43719 755 aaKnown RBP7.12□□□□□ -1.27
CSMD1-215ENST00000537824 TPM2P07951 284 aa7.12□□□□□ -1.27
CSMD1-215ENST00000537824 NEUROD2Q15784 382 aa7.12□□□□□ -1.27
CSMD1-215ENST00000537824 FAM43AQ8N2R8 423 aa7.12□□□□□ -1.27
CSMD1-215ENST00000537824 MCCP23508 829 aa7.12□□□□□ -1.27
CSMD1-215ENST00000537824 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.12□□□□□ -1.27
CSMD1-215ENST00000537824 CCAR2Q8N163 923 aaKnown RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms