RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ABCA5Q8WWZ7 1642 aa17.12■□□□□ 0.33
USP28-205ENST00000537706 ADGRL1O94910 1474 aa17.11■□□□□ 0.33
USP28-205ENST00000537706 HECW2Q9P2P5 1572 aa17.1■□□□□ 0.33
USP28-205ENST00000537706 FHAD1B1AJZ9 1412 aa17.09■□□□□ 0.33
USP28-205ENST00000537706 JPH4Q96JJ6 628 aa17.08■□□□□ 0.33
USP28-205ENST00000537706 ADAMTS12P58397 1594 aa17.08■□□□□ 0.32
USP28-205ENST00000537706 TSPOAP1O95153 1857 aa17■□□□□ 0.31
USP28-205ENST00000537706 WRNQ14191 1432 aaPredicted RBP eCLIP16.98■□□□□ 0.31
USP28-205ENST00000537706 ADCY10Q96PN6 1610 aa16.95■□□□□ 0.3
USP28-205ENST00000537706 LMTK3Q96Q04 1460 aa16.93■□□□□ 0.3
USP28-205ENST00000537706 ERICH3Q5RHP9 1530 aa16.92■□□□□ 0.3
USP28-205ENST00000537706 TOP2BQ02880 1626 aa16.87■□□□□ 0.29
USP28-205ENST00000537706 PLB1Q6P1J6 1458 aa16.86■□□□□ 0.29
USP28-205ENST00000537706 RUSC2Q8N2Y8 1516 aa16.83■□□□□ 0.29
USP28-205ENST00000537706 GLI2P10070 1586 aa16.83■□□□□ 0.28
USP28-205ENST00000537706 TEX14Q8IWB6 1497 aa16.83■□□□□ 0.28
USP28-205ENST00000537706 PTPRGP23470 1445 aa16.8■□□□□ 0.28
USP28-205ENST00000537706 ASXL2Q76L83 1435 aa16.8■□□□□ 0.28
USP28-205ENST00000537706 SOCS7O14512 581 aa16.79■□□□□ 0.28
USP28-205ENST00000537706 ABCC2Q92887 1545 aa16.77■□□□□ 0.28
USP28-205ENST00000537706 KIAA0586Q9BVV6 1533 aa16.76■□□□□ 0.27
USP28-205ENST00000537706 PPRC1Q5VV67 1664 aaKnown RBP16.75■□□□□ 0.27
USP28-205ENST00000537706 COL17A1Q9UMD9 1497 aaPredicted RBP16.75■□□□□ 0.27
USP28-205ENST00000537706 TTBK1Q5TCY1 1321 aaPredicted RBP16.75■□□□□ 0.27
USP28-205ENST00000537706 CARMIL2Q6F5E8 1435 aa16.71■□□□□ 0.26
USP28-205ENST00000537706 TNIKQ9UKE5 1360 aa16.71■□□□□ 0.26
USP28-205ENST00000537706 DISP3Q9P2K9 1392 aa16.7■□□□□ 0.26
USP28-205ENST00000537706 BIVM-ERCC5R4GMW8 1640 aa16.68■□□□□ 0.26
USP28-205ENST00000537706 EPRSP07814 1512 aaKnown RBP16.68■□□□□ 0.26
USP28-205ENST00000537706 UHRF1BP1LA0JNW5 1464 aa16.65■□□□□ 0.26
USP28-205ENST00000537706 MAP3K4Q9Y6R4 1608 aa16.65■□□□□ 0.26
USP28-205ENST00000537706 ILDR2Q71H61 639 aa16.63■□□□□ 0.25
USP28-205ENST00000537706 UACAQ9BZF9 1416 aa16.62■□□□□ 0.25
USP28-205ENST00000537706 CUL7Q14999 1698 aa16.6■□□□□ 0.25
USP28-205ENST00000537706 CERKQ8TCT0 537 aa16.57■□□□□ 0.24
USP28-205ENST00000537706 PTPRMP28827 1452 aa16.57■□□□□ 0.24
USP28-205ENST00000537706 KDM5BQ9UGL1 1544 aa16.55■□□□□ 0.24
USP28-205ENST00000537706 PCF11O94913 1555 aaKnown RBP16.54■□□□□ 0.24
USP28-205ENST00000537706 CD109Q6YHK3 1445 aa16.53■□□□□ 0.24
USP28-205ENST00000537706 MAGI3Q5TCQ9 1506 aa16.52■□□□□ 0.23
USP28-205ENST00000537706 KIF21BO75037 1637 aa16.52■□□□□ 0.23
USP28-205ENST00000537706 WDR7Q9Y4E6 1490 aa16.51■□□□□ 0.23
USP28-205ENST00000537706 IGF1RP08069 1367 aa16.5■□□□□ 0.23
USP28-205ENST00000537706 KIF27Q86VH2 1401 aa16.47■□□□□ 0.23
USP28-205ENST00000537706 ZCCHC11Q5TAX3 1644 aaKnown RBP16.47■□□□□ 0.23
USP28-205ENST00000537706 ARID4BQ4LE39 1312 aaPredicted RBP16.46■□□□□ 0.22
USP28-205ENST00000537706 ADAMTSL3P82987 1691 aa16.44■□□□□ 0.22
USP28-205ENST00000537706 IQGAP2Q13576 1575 aa16.44■□□□□ 0.22
USP28-205ENST00000537706 KCNH8Q96L42 1107 aa16.44■□□□□ 0.22
USP28-205ENST00000537706 CFAP43Q8NDM7 1665 aa16.43■□□□□ 0.22
USP28-205ENST00000537706 SPATA31D1Q6ZQQ2 1576 aa16.42■□□□□ 0.22
USP28-205ENST00000537706 CARMIL1Q5VZK9 1371 aa16.42■□□□□ 0.22
USP28-205ENST00000537706 ARAP3Q8WWN8 1544 aa16.4■□□□□ 0.22
USP28-205ENST00000537706 HSPA2P54652 639 aa16.4■□□□□ 0.22
USP28-205ENST00000537706 PHLDB1Q86UU1 1377 aa16.4■□□□□ 0.22
USP28-205ENST00000537706 DISP1Q96F81 1524 aa16.38■□□□□ 0.21
USP28-205ENST00000537706 MADDQ8WXG6 1647 aa16.34■□□□□ 0.21
USP28-205ENST00000537706 BCORL1Q5H9F3 1711 aa16.33■□□□□ 0.2
USP28-205ENST00000537706 DMRT2Q9Y5R5 561 aa16.33■□□□□ 0.2
USP28-205ENST00000537706 PLPPR3Q6T4P5 718 aa16.32■□□□□ 0.2
USP28-205ENST00000537706 FAM9AQ8IZU1 332 aaPredicted RBP16.32■□□□□ 0.2
USP28-205ENST00000537706 UGGT2Q9NYU1 1516 aa16.31■□□□□ 0.2
USP28-205ENST00000537706 SUPT5HO00267 1087 aaKnown RBP16.29■□□□□ 0.2
USP28-205ENST00000537706 POGZQ7Z3K3 1410 aa16.29■□□□□ 0.2
USP28-205ENST00000537706 KIAA0556O60303 1618 aa16.28■□□□□ 0.2
USP28-205ENST00000537706 RAPGEF3O95398 923 aa16.28■□□□□ 0.2
USP28-205ENST00000537706 RIMS1Q86UR5 1692 aaKnown RBP16.26■□□□□ 0.19
USP28-205ENST00000537706 NEO1Q92859 1461 aa16.23■□□□□ 0.19
USP28-205ENST00000537706 GOLGA3Q08378 1498 aa16.21■□□□□ 0.19
USP28-205ENST00000537706 YEATS2Q9ULM3 1422 aa16.21■□□□□ 0.19
USP28-205ENST00000537706 FANCAO15360 1455 aa16.2■□□□□ 0.18
USP28-205ENST00000537706 ABCA8O94911 1581 aa16.18■□□□□ 0.18
USP28-205ENST00000537706 RAPGEF2Q9Y4G8 1499 aa16.17■□□□□ 0.18
USP28-205ENST00000537706 AKNAQ7Z591 1439 aa16.17■□□□□ 0.18
USP28-205ENST00000537706 ARHGEF40Q8TER5 1519 aa16.16■□□□□ 0.18
USP28-205ENST00000537706 ABCA9Q8IUA7 1624 aa16.14■□□□□ 0.17
USP28-205ENST00000537706 DENND4BO75064 1496 aaPredicted RBP16.13■□□□□ 0.17
USP28-205ENST00000537706 IQSEC2Q5JU85 1478 aa16.12■□□□□ 0.17
USP28-205ENST00000537706 MLECQ14165 292 aa16.12■□□□□ 0.17
USP28-205ENST00000537706 ARID3CA6NKF2 412 aa16.11■□□□□ 0.17
USP28-205ENST00000537706 FRMPD1Q5SYB0 1578 aa16.11■□□□□ 0.17
USP28-205ENST00000537706 PTPRTO14522 1441 aa16.1■□□□□ 0.17
USP28-205ENST00000537706 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.08■□□□□ 0.16
USP28-205ENST00000537706 HNRNPUL2Q1KMD3 747 aaKnown RBP16.08■□□□□ 0.16
USP28-205ENST00000537706 UHRF1BP1Q6BDS2 1440 aa16.07■□□□□ 0.16
USP28-205ENST00000537706 TTC37Q6PGP7 1564 aa16.07■□□□□ 0.16
USP28-205ENST00000537706 PREX1Q8TCU6 1659 aa16.07■□□□□ 0.16
USP28-205ENST00000537706 FHOD3Q2V2M9 1422 aa16.07■□□□□ 0.16
USP28-205ENST00000537706 ATP10BO94823 1461 aa16.07■□□□□ 0.16
USP28-205ENST00000537706 EFCAB5A4FU69 1503 aa16.06■□□□□ 0.16
USP28-205ENST00000537706 ZFYVE16Q7Z3T8 1539 aa16.05■□□□□ 0.16
USP28-205ENST00000537706 MAGI2Q86UL8 1455 aa16.03■□□□□ 0.16
USP28-205ENST00000537706 FER1L4A9Z1Z3 1794 aa16.03■□□□□ 0.16
USP28-205ENST00000537706 UBAP1LF5GYI3 381 aa16.01■□□□□ 0.15
USP28-205ENST00000537706 CFAP74Q9C0B2 1584 aa16■□□□□ 0.15
USP28-205ENST00000537706 ZMYM4Q5VZL5 1548 aa15.99■□□□□ 0.15
USP28-205ENST00000537706 CEBPAP49715 358 aaPredicted RBP15.99■□□□□ 0.15
USP28-205ENST00000537706 STRCQ7RTU9 1775 aa15.99■□□□□ 0.15
USP28-205ENST00000537706 LTBP4Q8N2S1 1624 aa15.97■□□□□ 0.15
USP28-205ENST00000537706 RICTORQ6R327 1708 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms