RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 CUL7Q14999 1698 aa27.97■■■□□ 2.07
CLSTN3-204ENST00000535313 RUSC2Q8N2Y8 1516 aa27.96■■■□□ 2.07
CLSTN3-204ENST00000535313 CARMIL1Q5VZK9 1371 aa27.88■■■□□ 2.05
CLSTN3-204ENST00000535313 KIAA0586Q9BVV6 1533 aa27.88■■■□□ 2.05
CLSTN3-204ENST00000535313 NPM1P06748 294 aaKnown RBP eCLIP27.71■■■□□ 2.03
CLSTN3-204ENST00000535313 CARMIL2Q6F5E8 1435 aa27.64■■■□□ 2.02
CLSTN3-204ENST00000535313 RAPGEF2Q9Y4G8 1499 aa27.64■■■□□ 2.01
CLSTN3-204ENST00000535313 IQGAP2Q13576 1575 aa27.63■■■□□ 2.01
CLSTN3-204ENST00000535313 PTPRGP23470 1445 aa27.61■■■□□ 2.01
CLSTN3-204ENST00000535313 ADCY10Q96PN6 1610 aa27.61■■■□□ 2.01
CLSTN3-204ENST00000535313 TTBK1Q5TCY1 1321 aaPredicted RBP27.57■■■□□ 2
CLSTN3-204ENST00000535313 TNIKQ9UKE5 1360 aa27.57■■■□□ 2
CLSTN3-204ENST00000535313 MAPKBP1O60336 1514 aa27.56■■■□□ 2
CLSTN3-204ENST00000535313 KIF13AQ9H1H9 1805 aa27.55■■■□□ 2
CLSTN3-204ENST00000535313 FAM69CQ0P6D2 419 aa27.54■■■□□ 2
CLSTN3-204ENST00000535313 ABCC10Q5T3U5 1492 aa27.52■■■□□ 2
CLSTN3-204ENST00000535313 DISP1Q96F81 1524 aa27.46■■□□□ 1.99
CLSTN3-204ENST00000535313 UGGT2Q9NYU1 1516 aa27.46■■□□□ 1.99
CLSTN3-204ENST00000535313 DIP2BQ9P265 1576 aa27.43■■□□□ 1.98
CLSTN3-204ENST00000535313 ABCC2Q92887 1545 aa27.41■■□□□ 1.98
CLSTN3-204ENST00000535313 UACAQ9BZF9 1416 aa27.4■■□□□ 1.98
CLSTN3-204ENST00000535313 PRXQ9BXM0 1461 aa27.38■■□□□ 1.97
CLSTN3-204ENST00000535313 UHRF1BP1LA0JNW5 1464 aa27.38■■□□□ 1.97
CLSTN3-204ENST00000535313 KIAA0556O60303 1618 aa27.36■■□□□ 1.97
CLSTN3-204ENST00000535313 CTTNBP2Q8WZ74 1663 aa27.35■■□□□ 1.97
CLSTN3-204ENST00000535313 ASXL2Q76L83 1435 aa27.31■■□□□ 1.96
CLSTN3-204ENST00000535313 GOLGA3Q08378 1498 aa27.3■■□□□ 1.96
CLSTN3-204ENST00000535313 PLB1Q6P1J6 1458 aa27.3■■□□□ 1.96
CLSTN3-204ENST00000535313 AEBP2Q6ZN18 517 aaPredicted RBP27.28■■□□□ 1.96
CLSTN3-204ENST00000535313 CSRNP3Q8WYN3 585 aa27.27■■□□□ 1.96
CLSTN3-204ENST00000535313 KDM5BQ9UGL1 1544 aa27.25■■□□□ 1.95
CLSTN3-204ENST00000535313 TSPOAP1O95153 1857 aa27.23■■□□□ 1.95
CLSTN3-204ENST00000535313 GLI2P10070 1586 aa27.18■■□□□ 1.94
CLSTN3-204ENST00000535313 EEA1Q15075 1411 aa27.18■■□□□ 1.94
CLSTN3-204ENST00000535313 ZCCHC11Q5TAX3 1644 aaKnown RBP27.17■■□□□ 1.94
CLSTN3-204ENST00000535313 KDM6BO15054 1643 aa27.16■■□□□ 1.94
CLSTN3-204ENST00000535313 FAM9AQ8IZU1 332 aaPredicted RBP27.15■■□□□ 1.94
CLSTN3-204ENST00000535313 EPRSP07814 1512 aaKnown RBP27.13■■□□□ 1.93
CLSTN3-204ENST00000535313 ABCA8O94911 1581 aa27.1■■□□□ 1.93
CLSTN3-204ENST00000535313 P3H3Q8IVL6 736 aa27.08■■□□□ 1.93
CLSTN3-204ENST00000535313 WDR7Q9Y4E6 1490 aa27.06■■□□□ 1.92
CLSTN3-204ENST00000535313 PPRC1Q5VV67 1664 aaKnown RBP27.04■■□□□ 1.92
CLSTN3-204ENST00000535313 MAP3K4Q9Y6R4 1608 aa27.01■■□□□ 1.92
CLSTN3-204ENST00000535313 TEX14Q8IWB6 1497 aa27■■□□□ 1.91
CLSTN3-204ENST00000535313 SAMD9Q5K651 1589 aa26.98■■□□□ 1.91
CLSTN3-204ENST00000535313 KCNH8Q96L42 1107 aa26.98■■□□□ 1.91
CLSTN3-204ENST00000535313 RANGAP1P46060 587 aaPredicted RBP26.96■■□□□ 1.91
CLSTN3-204ENST00000535313 ARID3CA6NKF2 412 aa26.94■■□□□ 1.9
CLSTN3-204ENST00000535313 CHIC1Q5VXU3 224 aa26.91■■□□□ 1.9
CLSTN3-204ENST00000535313 CD109Q6YHK3 1445 aa26.9■■□□□ 1.9
CLSTN3-204ENST00000535313 KIF21BO75037 1637 aa26.9■■□□□ 1.9
CLSTN3-204ENST00000535313 ATP10BO94823 1461 aa26.9■■□□□ 1.9
CLSTN3-204ENST00000535313 COL17A1Q9UMD9 1497 aaPredicted RBP26.87■■□□□ 1.89
CLSTN3-204ENST00000535313 CFAP43Q8NDM7 1665 aa26.86■■□□□ 1.89
CLSTN3-204ENST00000535313 RAPGEF6Q8TEU7 1601 aa26.86■■□□□ 1.89
CLSTN3-204ENST00000535313 MAGI3Q5TCQ9 1506 aa26.85■■□□□ 1.89
CLSTN3-204ENST00000535313 FHOD3Q2V2M9 1422 aa26.84■■□□□ 1.89
CLSTN3-204ENST00000535313 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.83■■□□□ 1.89
CLSTN3-204ENST00000535313 HNRNPUL2Q1KMD3 747 aaKnown RBP26.83■■□□□ 1.89
CLSTN3-204ENST00000535313 KDM4FA0A1W2PPD8 638 aa26.81■■□□□ 1.88
CLSTN3-204ENST00000535313 EFCAB5A4FU69 1503 aa26.79■■□□□ 1.88
CLSTN3-204ENST00000535313 UBTFP17480 764 aaKnown RBP26.78■■□□□ 1.88
CLSTN3-204ENST00000535313 EHMT2Q96KQ7 1210 aa26.78■■□□□ 1.88
CLSTN3-204ENST00000535313 NUP153P49790 1475 aaKnown RBP26.76■■□□□ 1.87
CLSTN3-204ENST00000535313 ABCA9Q8IUA7 1624 aa26.69■■□□□ 1.86
CLSTN3-204ENST00000535313 PLEKHD1A6NEE1 506 aa26.67■■□□□ 1.86
CLSTN3-204ENST00000535313 PHLDB1Q86UU1 1377 aa26.65■■□□□ 1.86
CLSTN3-204ENST00000535313 ADGRL1O94910 1474 aa26.65■■□□□ 1.86
CLSTN3-204ENST00000535313 ARAP3Q8WWN8 1544 aa26.63■■□□□ 1.85
CLSTN3-204ENST00000535313 FMN1Q68DA7 1419 aa26.58■■□□□ 1.85
CLSTN3-204ENST00000535313 NEO1Q92859 1461 aa26.57■■□□□ 1.84
CLSTN3-204ENST00000535313 ARHGAP35Q9NRY4 1499 aa26.55■■□□□ 1.84
CLSTN3-204ENST00000535313 ATP1B4Q9UN42 357 aaPredicted RBP26.55■■□□□ 1.84
CLSTN3-204ENST00000535313 CDK13Q14004 1512 aaKnown RBP26.51■■□□□ 1.83
CLSTN3-204ENST00000535313 RAPGEF3O95398 923 aa26.51■■□□□ 1.83
CLSTN3-204ENST00000535313 HECW1Q76N89 1606 aa26.48■■□□□ 1.83
CLSTN3-204ENST00000535313 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.48■■□□□ 1.83
CLSTN3-204ENST00000535313 CDK11AQ9UQ88 783 aaPredicted RBP26.45■■□□□ 1.82
CLSTN3-204ENST00000535313 FANCAO15360 1455 aa26.43■■□□□ 1.82
CLSTN3-204ENST00000535313 TTC37Q6PGP7 1564 aa26.42■■□□□ 1.82
CLSTN3-204ENST00000535313 AKNAQ7Z591 1439 aa26.42■■□□□ 1.82
CLSTN3-204ENST00000535313 CFAP74Q9C0B2 1584 aa26.41■■□□□ 1.82
CLSTN3-204ENST00000535313 DENND4BO75064 1496 aaPredicted RBP26.4■■□□□ 1.82
CLSTN3-204ENST00000535313 FRMPD1Q5SYB0 1578 aa26.38■■□□□ 1.81
CLSTN3-204ENST00000535313 PLCH2O75038 1416 aa26.34■■□□□ 1.81
CLSTN3-204ENST00000535313 CLIP1P30622 1438 aa26.31■■□□□ 1.8
CLSTN3-204ENST00000535313 TROQ12816 1431 aaPredicted RBP26.31■■□□□ 1.8
CLSTN3-204ENST00000535313 ARID4BQ4LE39 1312 aaPredicted RBP26.3■■□□□ 1.8
CLSTN3-204ENST00000535313 RICTORQ6R327 1708 aa26.3■■□□□ 1.8
CLSTN3-204ENST00000535313 CASKIN1Q8WXD9 1431 aa26.29■■□□□ 1.8
CLSTN3-204ENST00000535313 KIF14Q15058 1648 aa26.28■■□□□ 1.8
CLSTN3-204ENST00000535313 EFCAB2Q5VUJ9 269 aa26.28■■□□□ 1.8
CLSTN3-204ENST00000535313 ARHGEF40Q8TER5 1519 aa26.27■■□□□ 1.8
CLSTN3-204ENST00000535313 MYO5CQ9NQX4 1742 aa26.25■■□□□ 1.79
CLSTN3-204ENST00000535313 CCDC18Q5T9S5 1454 aa26.25■■□□□ 1.79
CLSTN3-204ENST00000535313 SCAPERQ9BY12 1400 aa26.25■■□□□ 1.79
CLSTN3-204ENST00000535313 PCF11O94913 1555 aaKnown RBP26.24■■□□□ 1.79
CLSTN3-204ENST00000535313 LRRIQ1Q96JM4 1722 aa26.24■■□□□ 1.79
CLSTN3-204ENST00000535313 ZMYM4Q5VZL5 1548 aa26.23■■□□□ 1.79
CLSTN3-204ENST00000535313 POGZQ7Z3K3 1410 aa26.22■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms