RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 CCNB3Q8WWL7 1395 aa27.58■■■□□ 2.01
SMPD1-210ENST00000534405 TIAM1Q13009 1591 aa27.52■■■□□ 2
SMPD1-210ENST00000534405 RAD54L2Q9Y4B4 1467 aa27.51■■□□□ 1.99
SMPD1-210ENST00000534405 DNMBPQ6XZF7 1577 aa27.49■■□□□ 1.99
SMPD1-210ENST00000534405 NESP48681 1621 aa27.49■■□□□ 1.99
SMPD1-210ENST00000534405 MAP3K1Q13233 1512 aa27.47■■□□□ 1.99
SMPD1-210ENST00000534405 RBM19Q9Y4C8 960 aaKnown RBP27.46■■□□□ 1.99
SMPD1-210ENST00000534405 ITGAEP38570 1179 aa27.46■■□□□ 1.99
SMPD1-210ENST00000534405 TOPBP1Q92547 1522 aa27.45■■□□□ 1.99
SMPD1-210ENST00000534405 POLA1P09884 1462 aaPredicted RBP27.45■■□□□ 1.98
SMPD1-210ENST00000534405 ABCA10Q8WWZ4 1543 aa27.43■■□□□ 1.98
SMPD1-210ENST00000534405 LRRC9Q6ZRR7 1453 aa27.41■■□□□ 1.98
SMPD1-210ENST00000534405 P3H3Q8IVL6 736 aa27.4■■□□□ 1.98
SMPD1-210ENST00000534405 PCF11O94913 1555 aaKnown RBP27.37■■□□□ 1.97
SMPD1-210ENST00000534405 PHLDB1Q86UU1 1377 aa27.36■■□□□ 1.97
SMPD1-210ENST00000534405 FHAD1B1AJZ9 1412 aa27.35■■□□□ 1.97
SMPD1-210ENST00000534405 RAB3GAP2Q9H2M9 1393 aa27.33■■□□□ 1.97
SMPD1-210ENST00000534405 FHOD3Q2V2M9 1422 aa27.32■■□□□ 1.96
SMPD1-210ENST00000534405 CFAP43Q8NDM7 1665 aa27.32■■□□□ 1.96
SMPD1-210ENST00000534405 MSH5O43196 834 aa27.29■■□□□ 1.96
SMPD1-210ENST00000534405 MYT1LQ9UL68 1186 aa27.27■■□□□ 1.96
SMPD1-210ENST00000534405 CUL7Q14999 1698 aa27.26■■□□□ 1.95
SMPD1-210ENST00000534405 URB2Q14146 1524 aaKnown RBP27.26■■□□□ 1.95
SMPD1-210ENST00000534405 ATP1B4Q9UN42 357 aaPredicted RBP27.25■■□□□ 1.95
SMPD1-210ENST00000534405 MAPKBP1O60336 1514 aa27.25■■□□□ 1.95
SMPD1-210ENST00000534405 EFCAB5A4FU69 1503 aa27.22■■□□□ 1.95
SMPD1-210ENST00000534405 CTTNBP2Q8WZ74 1663 aa27.21■■□□□ 1.95
SMPD1-210ENST00000534405 WDR97A6NE52 1622 aa27.21■■□□□ 1.95
SMPD1-210ENST00000534405 LAMC3Q9Y6N6 1575 aa27.21■■□□□ 1.95
SMPD1-210ENST00000534405 SETD5Q9C0A6 1442 aa27.2■■□□□ 1.95
SMPD1-210ENST00000534405 FAM50AQ14320 339 aaKnown RBP27.2■■□□□ 1.94
SMPD1-210ENST00000534405 BCANQ96GW7 911 aa27.2■■□□□ 1.94
SMPD1-210ENST00000534405 FYCO1Q9BQS8 1478 aa27.2■■□□□ 1.94
SMPD1-210ENST00000534405 CASKIN1Q8WXD9 1431 aa27.18■■□□□ 1.94
SMPD1-210ENST00000534405 AQRO60306 1485 aaKnown RBP eCLIP27.15■■□□□ 1.94
SMPD1-210ENST00000534405 TDRD9Q8NDG6 1382 aaKnown RBP27.15■■□□□ 1.94
SMPD1-210ENST00000534405 DNAJC5BQ9UF47 199 aa27.15■■□□□ 1.94
SMPD1-210ENST00000534405 FKBP8Q14318 412 aa27.14■■□□□ 1.94
SMPD1-210ENST00000534405 FANCIQ9NVI1 1328 aa27.13■■□□□ 1.93
SMPD1-210ENST00000534405 ABCA5Q8WWZ7 1642 aa27.12■■□□□ 1.93
SMPD1-210ENST00000534405 ANO8Q9HCE9 1232 aaPredicted RBP27.1■■□□□ 1.93
SMPD1-210ENST00000534405 SNAPC4Q5SXM2 1469 aa27.07■■□□□ 1.92
SMPD1-210ENST00000534405 FMN1Q68DA7 1419 aa27.05■■□□□ 1.92
SMPD1-210ENST00000534405 GAPVD1Q14C86 1478 aa27.05■■□□□ 1.92
SMPD1-210ENST00000534405 SIN3AQ96ST3 1273 aa27.02■■□□□ 1.92
SMPD1-210ENST00000534405 PDS5BQ9NTI5 1447 aa27.02■■□□□ 1.92
SMPD1-210ENST00000534405 SAMD9Q5K651 1589 aa27.01■■□□□ 1.91
SMPD1-210ENST00000534405 DEKP35659 375 aaKnown RBP27.01■■□□□ 1.91
SMPD1-210ENST00000534405 KIF21AQ7Z4S6 1674 aa26.99■■□□□ 1.91
SMPD1-210ENST00000534405 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.99■■□□□ 1.91
SMPD1-210ENST00000534405 LRRIQ1Q96JM4 1722 aa26.98■■□□□ 1.91
SMPD1-210ENST00000534405 FGD6Q6ZV73 1430 aa26.97■■□□□ 1.91
SMPD1-210ENST00000534405 ERICH6BQ5W0A0 696 aa26.93■■□□□ 1.9
SMPD1-210ENST00000534405 MTUS2Q5JR59 1369 aa26.93■■□□□ 1.9
SMPD1-210ENST00000534405 NEFLP07196 543 aa26.92■■□□□ 1.9
SMPD1-210ENST00000534405 GRIN2BQ13224 1484 aa26.91■■□□□ 1.9
SMPD1-210ENST00000534405 TARBP1Q13395 1621 aaKnown RBP26.91■■□□□ 1.9
SMPD1-210ENST00000534405 PTPRKQ15262 1439 aa26.88■■□□□ 1.89
SMPD1-210ENST00000534405 NCOA2Q15596 1464 aa26.84■■□□□ 1.89
SMPD1-210ENST00000534405 KCNH8Q96L42 1107 aa26.84■■□□□ 1.89
SMPD1-210ENST00000534405 THOC2Q8NI27 1593 aaKnown RBP26.81■■□□□ 1.88
SMPD1-210ENST00000534405 MYOM3Q5VTT5 1437 aa26.8■■□□□ 1.88
SMPD1-210ENST00000534405 CCDC18Q5T9S5 1454 aa26.79■■□□□ 1.88
SMPD1-210ENST00000534405 HFM1A2PYH4 1435 aa26.78■■□□□ 1.88
SMPD1-210ENST00000534405 TIMELESSQ9UNS1 1208 aa26.77■■□□□ 1.88
SMPD1-210ENST00000534405 SALL2Q9Y467 1007 aaPredicted RBP26.77■■□□□ 1.88
SMPD1-210ENST00000534405 MAGI3Q5TCQ9 1506 aa26.77■■□□□ 1.88
SMPD1-210ENST00000534405 SUPT6HQ7KZ85 1726 aaKnown RBP26.76■■□□□ 1.87
SMPD1-210ENST00000534405 PBRM1Q86U86 1689 aa26.76■■□□□ 1.87
SMPD1-210ENST00000534405 EHBP1L1Q8N3D4 1523 aa26.76■■□□□ 1.87
SMPD1-210ENST00000534405 PTPN23Q9H3S7 1636 aa26.75■■□□□ 1.87
SMPD1-210ENST00000534405 PPP1R15AO75807 674 aaPredicted RBP26.75■■□□□ 1.87
SMPD1-210ENST00000534405 UBE2Q2Q8WVN8 375 aa26.75■■□□□ 1.87
SMPD1-210ENST00000534405 UGGT2Q9NYU1 1516 aa26.72■■□□□ 1.87
SMPD1-210ENST00000534405 NAIPQ13075 1403 aa26.72■■□□□ 1.87
SMPD1-210ENST00000534405 ARHGEF11O15085 1522 aa26.71■■□□□ 1.87
SMPD1-210ENST00000534405 UACAQ9BZF9 1416 aa26.7■■□□□ 1.87
SMPD1-210ENST00000534405 DDX10Q13206 875 aaKnown RBP26.7■■□□□ 1.86
SMPD1-210ENST00000534405 ADAMTS12P58397 1594 aa26.68■■□□□ 1.86
SMPD1-210ENST00000534405 HIRIP3Q9BW71 556 aaPredicted RBP26.68■■□□□ 1.86
SMPD1-210ENST00000534405 IQGAP2Q13576 1575 aa26.67■■□□□ 1.86
SMPD1-210ENST00000534405 CDK11AQ9UQ88 783 aaPredicted RBP26.66■■□□□ 1.86
SMPD1-210ENST00000534405 MRC2Q9UBG0 1479 aa26.63■■□□□ 1.85
SMPD1-210ENST00000534405 HECW1Q76N89 1606 aa26.62■■□□□ 1.85
SMPD1-210ENST00000534405 TONSLQ96HA7 1378 aa26.6■■□□□ 1.85
SMPD1-210ENST00000534405 EPRSP07814 1512 aaKnown RBP26.6■■□□□ 1.85
SMPD1-210ENST00000534405 CDK13Q14004 1512 aaKnown RBP26.59■■□□□ 1.85
SMPD1-210ENST00000534405 TCOF1Q13428 1488 aaKnown RBP26.58■■□□□ 1.85
SMPD1-210ENST00000534405 ZNF608Q9ULD9 1512 aaPredicted RBP26.56■■□□□ 1.84
SMPD1-210ENST00000534405 RRP7BPQ9NSQ0 103 aa26.56■■□□□ 1.84
SMPD1-210ENST00000534405 ARID3CA6NKF2 412 aa26.55■■□□□ 1.84
SMPD1-210ENST00000534405 WDR62O43379 1518 aa26.55■■□□□ 1.84
SMPD1-210ENST00000534405 CHIC2Q9UKJ5 165 aa26.55■■□□□ 1.84
SMPD1-210ENST00000534405 KDM5BQ9UGL1 1544 aa26.51■■□□□ 1.83
SMPD1-210ENST00000534405 CCDC136Q96JN2 1154 aa26.5■■□□□ 1.83
SMPD1-210ENST00000534405 DENND4BO75064 1496 aaPredicted RBP26.49■■□□□ 1.83
SMPD1-210ENST00000534405 GCC2Q8IWJ2 1684 aa26.49■■□□□ 1.83
SMPD1-210ENST00000534405 KDM6BO15054 1643 aa26.48■■□□□ 1.83
SMPD1-210ENST00000534405 IFT140Q96RY7 1462 aa26.46■■□□□ 1.83
SMPD1-210ENST00000534405 MIA2Q96PC5 1412 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms