RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 PRG4Q92954 1404 aaPredicted RBP20.48■□□□□ 0.87
TRAPPC4-213ENST00000533149 JPH4Q96JJ6 628 aa20.44■□□□□ 0.86
TRAPPC4-213ENST00000533149 MAPKBP1O60336 1514 aa20.43■□□□□ 0.86
TRAPPC4-213ENST00000533149 KDM6BO15054 1643 aa20.41■□□□□ 0.86
TRAPPC4-213ENST00000533149 ERICH3Q5RHP9 1530 aa20.39■□□□□ 0.86
TRAPPC4-213ENST00000533149 DIP2BQ9P265 1576 aa20.39■□□□□ 0.86
TRAPPC4-213ENST00000533149 ADCY10Q96PN6 1610 aa20.29■□□□□ 0.84
TRAPPC4-213ENST00000533149 TOP2BQ02880 1626 aa20.28■□□□□ 0.84
TRAPPC4-213ENST00000533149 BIVM-ERCC5R4GMW8 1640 aa20.26■□□□□ 0.83
TRAPPC4-213ENST00000533149 RUSC2Q8N2Y8 1516 aa20.26■□□□□ 0.83
TRAPPC4-213ENST00000533149 TSPOAP1O95153 1857 aa20.25■□□□□ 0.83
TRAPPC4-213ENST00000533149 ADGRL1O94910 1474 aa20.18■□□□□ 0.82
TRAPPC4-213ENST00000533149 KIAA0586Q9BVV6 1533 aa20.15■□□□□ 0.82
TRAPPC4-213ENST00000533149 PTPRGP23470 1445 aa20.1■□□□□ 0.81
TRAPPC4-213ENST00000533149 HECW2Q9P2P5 1572 aa20.1■□□□□ 0.81
TRAPPC4-213ENST00000533149 PLB1Q6P1J6 1458 aa20.08■□□□□ 0.8
TRAPPC4-213ENST00000533149 GLI2P10070 1586 aa20.07■□□□□ 0.8
TRAPPC4-213ENST00000533149 ABCC2Q92887 1545 aa20.06■□□□□ 0.8
TRAPPC4-213ENST00000533149 ASXL2Q76L83 1435 aa20.05■□□□□ 0.8
TRAPPC4-213ENST00000533149 PPRC1Q5VV67 1664 aaKnown RBP20.03■□□□□ 0.8
TRAPPC4-213ENST00000533149 TNIKQ9UKE5 1360 aa20■□□□□ 0.79
TRAPPC4-213ENST00000533149 TTBK1Q5TCY1 1321 aaPredicted RBP20■□□□□ 0.79
TRAPPC4-213ENST00000533149 CARMIL2Q6F5E8 1435 aa20■□□□□ 0.79
TRAPPC4-213ENST00000533149 SUPT5HO00267 1087 aaKnown RBP20■□□□□ 0.79
TRAPPC4-213ENST00000533149 COL17A1Q9UMD9 1497 aaPredicted RBP19.99■□□□□ 0.79
TRAPPC4-213ENST00000533149 IGF1RP08069 1367 aa19.98■□□□□ 0.79
TRAPPC4-213ENST00000533149 TEX14Q8IWB6 1497 aa19.97■□□□□ 0.79
TRAPPC4-213ENST00000533149 UHRF1BP1LA0JNW5 1464 aa19.96■□□□□ 0.79
TRAPPC4-213ENST00000533149 FBXO41Q8TF61 875 aa19.96■□□□□ 0.79
TRAPPC4-213ENST00000533149 CUL7Q14999 1698 aa19.95■□□□□ 0.78
TRAPPC4-213ENST00000533149 KIF27Q86VH2 1401 aa19.92■□□□□ 0.78
TRAPPC4-213ENST00000533149 EPRSP07814 1512 aaKnown RBP19.92■□□□□ 0.78
TRAPPC4-213ENST00000533149 MAP3K4Q9Y6R4 1608 aa19.92■□□□□ 0.78
TRAPPC4-213ENST00000533149 UACAQ9BZF9 1416 aa19.91■□□□□ 0.78
TRAPPC4-213ENST00000533149 KDM5BQ9UGL1 1544 aa19.86■□□□□ 0.77
TRAPPC4-213ENST00000533149 CARMIL1Q5VZK9 1371 aa19.84■□□□□ 0.77
TRAPPC4-213ENST00000533149 IQGAP2Q13576 1575 aa19.82■□□□□ 0.76
TRAPPC4-213ENST00000533149 DISP1Q96F81 1524 aa19.78■□□□□ 0.76
TRAPPC4-213ENST00000533149 ZCCHC11Q5TAX3 1644 aaKnown RBP19.77■□□□□ 0.76
TRAPPC4-213ENST00000533149 WDR7Q9Y4E6 1490 aa19.76■□□□□ 0.75
TRAPPC4-213ENST00000533149 MAGI3Q5TCQ9 1506 aa19.73■□□□□ 0.75
TRAPPC4-213ENST00000533149 CD109Q6YHK3 1445 aa19.72■□□□□ 0.75
TRAPPC4-213ENST00000533149 UGGT2Q9NYU1 1516 aa19.69■□□□□ 0.74
TRAPPC4-213ENST00000533149 CFAP43Q8NDM7 1665 aa19.67■□□□□ 0.74
TRAPPC4-213ENST00000533149 KIF21BO75037 1637 aa19.65■□□□□ 0.74
TRAPPC4-213ENST00000533149 KCNH8Q96L42 1107 aa19.65■□□□□ 0.74
TRAPPC4-213ENST00000533149 KIAA0556O60303 1618 aa19.64■□□□□ 0.73
TRAPPC4-213ENST00000533149 PTPRMP28827 1452 aa19.62■□□□□ 0.73
TRAPPC4-213ENST00000533149 ARAP3Q8WWN8 1544 aa19.6■□□□□ 0.73
TRAPPC4-213ENST00000533149 LMTK3Q96Q04 1460 aa19.59■□□□□ 0.73
TRAPPC4-213ENST00000533149 RAPGEF2Q9Y4G8 1499 aa19.58■□□□□ 0.73
TRAPPC4-213ENST00000533149 ADAMTSL3P82987 1691 aa19.56■□□□□ 0.72
TRAPPC4-213ENST00000533149 PHLDB1Q86UU1 1377 aa19.54■□□□□ 0.72
TRAPPC4-213ENST00000533149 PCF11O94913 1555 aaKnown RBP19.54■□□□□ 0.72
TRAPPC4-213ENST00000533149 GOLGA3Q08378 1498 aa19.51■□□□□ 0.71
TRAPPC4-213ENST00000533149 ABCA8O94911 1581 aa19.51■□□□□ 0.71
TRAPPC4-213ENST00000533149 ARID4BQ4LE39 1312 aaPredicted RBP19.47■□□□□ 0.71
TRAPPC4-213ENST00000533149 FAM9AQ8IZU1 332 aaPredicted RBP19.47■□□□□ 0.71
TRAPPC4-213ENST00000533149 RAPGEF3O95398 923 aa19.45■□□□□ 0.7
TRAPPC4-213ENST00000533149 BCORL1Q5H9F3 1711 aa19.45■□□□□ 0.7
TRAPPC4-213ENST00000533149 CERKQ8TCT0 537 aa19.43■□□□□ 0.7
TRAPPC4-213ENST00000533149 MADDQ8WXG6 1647 aa19.43■□□□□ 0.7
TRAPPC4-213ENST00000533149 SOCS7O14512 581 aa19.41■□□□□ 0.7
TRAPPC4-213ENST00000533149 NEO1Q92859 1461 aa19.41■□□□□ 0.7
TRAPPC4-213ENST00000533149 ABCA9Q8IUA7 1624 aa19.4■□□□□ 0.7
TRAPPC4-213ENST00000533149 CTTNBP2Q8WZ74 1663 aa19.4■□□□□ 0.7
TRAPPC4-213ENST00000533149 HSPA2P54652 639 aa19.38■□□□□ 0.69
TRAPPC4-213ENST00000533149 DISP3Q9P2K9 1392 aa19.37■□□□□ 0.69
TRAPPC4-213ENST00000533149 ATP10BO94823 1461 aa19.36■□□□□ 0.69
TRAPPC4-213ENST00000533149 ARID3CA6NKF2 412 aa19.35■□□□□ 0.69
TRAPPC4-213ENST00000533149 ILDR2Q71H61 639 aa19.34■□□□□ 0.69
TRAPPC4-213ENST00000533149 RIMS1Q86UR5 1692 aaKnown RBP19.34■□□□□ 0.69
TRAPPC4-213ENST00000533149 FRMPD1Q5SYB0 1578 aa19.32■□□□□ 0.68
TRAPPC4-213ENST00000533149 POGZQ7Z3K3 1410 aa19.31■□□□□ 0.68
TRAPPC4-213ENST00000533149 ARHGEF40Q8TER5 1519 aa19.29■□□□□ 0.68
TRAPPC4-213ENST00000533149 PLPPR3Q6T4P5 718 aa19.28■□□□□ 0.68
TRAPPC4-213ENST00000533149 FANCAO15360 1455 aa19.26■□□□□ 0.67
TRAPPC4-213ENST00000533149 DENND4BO75064 1496 aaPredicted RBP19.26■□□□□ 0.67
TRAPPC4-213ENST00000533149 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.25■□□□□ 0.67
TRAPPC4-213ENST00000533149 HNRNPUL2Q1KMD3 747 aaKnown RBP19.25■□□□□ 0.67
TRAPPC4-213ENST00000533149 AKNAQ7Z591 1439 aa19.24■□□□□ 0.67
TRAPPC4-213ENST00000533149 P3H3Q8IVL6 736 aa19.24■□□□□ 0.67
TRAPPC4-213ENST00000533149 FHOD3Q2V2M9 1422 aa19.22■□□□□ 0.67
TRAPPC4-213ENST00000533149 DMRT2Q9Y5R5 561 aa19.22■□□□□ 0.67
TRAPPC4-213ENST00000533149 PRXQ9BXM0 1461 aa19.2■□□□□ 0.66
TRAPPC4-213ENST00000533149 RICTORQ6R327 1708 aa19.2■□□□□ 0.66
TRAPPC4-213ENST00000533149 RAPGEF6Q8TEU7 1601 aa19.18■□□□□ 0.66
TRAPPC4-213ENST00000533149 EFCAB5A4FU69 1503 aa19.17■□□□□ 0.66
TRAPPC4-213ENST00000533149 YEATS2Q9ULM3 1422 aa19.17■□□□□ 0.66
TRAPPC4-213ENST00000533149 MAGI2Q86UL8 1455 aa19.16■□□□□ 0.66
TRAPPC4-213ENST00000533149 ZMYM4Q5VZL5 1548 aa19.16■□□□□ 0.66
TRAPPC4-213ENST00000533149 ZFYVE16Q7Z3T8 1539 aa19.16■□□□□ 0.66
TRAPPC4-213ENST00000533149 CFAP74Q9C0B2 1584 aa19.16■□□□□ 0.66
TRAPPC4-213ENST00000533149 MLECQ14165 292 aa19.16■□□□□ 0.66
TRAPPC4-213ENST00000533149 TTC37Q6PGP7 1564 aa19.16■□□□□ 0.66
TRAPPC4-213ENST00000533149 PLEKHD1A6NEE1 506 aa19.15■□□□□ 0.66
TRAPPC4-213ENST00000533149 SPATA31D1Q6ZQQ2 1576 aa19.14■□□□□ 0.65
TRAPPC4-213ENST00000533149 FER1L4A9Z1Z3 1794 aa19.13■□□□□ 0.65
TRAPPC4-213ENST00000533149 PREX1Q8TCU6 1659 aa19.11■□□□□ 0.65
TRAPPC4-213ENST00000533149 NUP153P49790 1475 aaKnown RBP19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms