RNA–Protein interactions for RNA: ENST00000533123.5

SMPD1-208, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,211 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-208ENST00000533123 CTTNBP2Q8WZ74 1663 aa29.53■■■□□ 2.32
SMPD1-208ENST00000533123 CEP162Q5TB80 1403 aa29.53■■■□□ 2.32
SMPD1-208ENST00000533123 CEP170Q5SW79 1584 aa29.52■■■□□ 2.32
SMPD1-208ENST00000533123 NUP160Q12769 1436 aa29.5■■■□□ 2.31
SMPD1-208ENST00000533123 KIAA0586Q9BVV6 1533 aa29.45■■■□□ 2.3
SMPD1-208ENST00000533123 CLIP1P30622 1438 aa29.44■■■□□ 2.3
SMPD1-208ENST00000533123 IQGAP2Q13576 1575 aa29.41■■■□□ 2.3
SMPD1-208ENST00000533123 ARHGAP35Q9NRY4 1499 aa29.31■■■□□ 2.28
SMPD1-208ENST00000533123 P3H3Q8IVL6 736 aa29.3■■■□□ 2.28
SMPD1-208ENST00000533123 JPH4Q96JJ6 628 aa29.3■■■□□ 2.28
SMPD1-208ENST00000533123 OSCARQ8IYS5 282 aa29.29■■■□□ 2.28
SMPD1-208ENST00000533123 UGGT2Q9NYU1 1516 aa29.26■■■□□ 2.27
SMPD1-208ENST00000533123 CLASP1Q7Z460 1538 aa29.24■■■□□ 2.27
SMPD1-208ENST00000533123 ARAP1Q96P48 1450 aa29.23■■■□□ 2.27
SMPD1-208ENST00000533123 EFCAB5A4FU69 1503 aa29.22■■■□□ 2.27
SMPD1-208ENST00000533123 SAMD9Q5K651 1589 aa29.21■■■□□ 2.27
SMPD1-208ENST00000533123 FHOD3Q2V2M9 1422 aa29.18■■■□□ 2.26
SMPD1-208ENST00000533123 DISP1Q96F81 1524 aa29.18■■■□□ 2.26
SMPD1-208ENST00000533123 PRG4Q92954 1404 aaPredicted RBP29.14■■■□□ 2.26
SMPD1-208ENST00000533123 SHROOM2Q13796 1616 aa29.13■■■□□ 2.25
SMPD1-208ENST00000533123 KIAA0556O60303 1618 aa29.13■■■□□ 2.25
SMPD1-208ENST00000533123 CARMIL2Q6F5E8 1435 aa29.11■■■□□ 2.25
SMPD1-208ENST00000533123 TTBK1Q5TCY1 1321 aaPredicted RBP29.08■■■□□ 2.25
SMPD1-208ENST00000533123 VPS8Q8N3P4 1428 aa29.08■■■□□ 2.25
SMPD1-208ENST00000533123 ERCC6L2Q5T890 1561 aa29.03■■■□□ 2.24
SMPD1-208ENST00000533123 FMN1Q68DA7 1419 aa28.99■■■□□ 2.23
SMPD1-208ENST00000533123 ATP1B4Q9UN42 357 aaPredicted RBP28.92■■■□□ 2.22
SMPD1-208ENST00000533123 PCGF6Q9BYE7 350 aa28.92■■■□□ 2.22
SMPD1-208ENST00000533123 PTPRGP23470 1445 aa28.9■■■□□ 2.22
SMPD1-208ENST00000533123 PCF11O94913 1555 aaKnown RBP28.9■■■□□ 2.22
SMPD1-208ENST00000533123 CASKIN1Q8WXD9 1431 aa28.87■■■□□ 2.21
SMPD1-208ENST00000533123 PLB1Q6P1J6 1458 aa28.83■■■□□ 2.21
SMPD1-208ENST00000533123 FYCO1Q9BQS8 1478 aa28.83■■■□□ 2.21
SMPD1-208ENST00000533123 APLP2Q06481 763 aa28.81■■■□□ 2.2
SMPD1-208ENST00000533123 PPARGC1BQ86YN6 1023 aaKnown RBP28.81■■■□□ 2.2
SMPD1-208ENST00000533123 ARHGEF11O15085 1522 aa28.78■■■□□ 2.2
SMPD1-208ENST00000533123 RAPGEF6Q8TEU7 1601 aa28.77■■■□□ 2.2
SMPD1-208ENST00000533123 TRIM26Q12899 539 aaPredicted RBP28.77■■■□□ 2.2
SMPD1-208ENST00000533123 ARID3CA6NKF2 412 aa28.76■■■□□ 2.19
SMPD1-208ENST00000533123 ABCA8O94911 1581 aa28.74■■■□□ 2.19
SMPD1-208ENST00000533123 HECW1Q76N89 1606 aa28.73■■■□□ 2.19
SMPD1-208ENST00000533123 UACAQ9BZF9 1416 aa28.71■■■□□ 2.19
SMPD1-208ENST00000533123 NUP153P49790 1475 aaKnown RBP28.71■■■□□ 2.19
SMPD1-208ENST00000533123 LRRIQ1Q96JM4 1722 aa28.7■■■□□ 2.19
SMPD1-208ENST00000533123 RIMBP3CA6NJZ7 1639 aa28.68■■■□□ 2.18
SMPD1-208ENST00000533123 RIMBP3BA6NNM3 1639 aa28.68■■■□□ 2.18
SMPD1-208ENST00000533123 RIMBP3Q9UFD9 1639 aa28.68■■■□□ 2.18
SMPD1-208ENST00000533123 EPRSP07814 1512 aaKnown RBP28.67■■■□□ 2.18
SMPD1-208ENST00000533123 KANK4Q5T7N3 995 aaPredicted RBP28.66■■■□□ 2.18
SMPD1-208ENST00000533123 TIAM1Q13009 1591 aa28.66■■■□□ 2.18
SMPD1-208ENST00000533123 CDK13Q14004 1512 aaKnown RBP28.64■■■□□ 2.18
SMPD1-208ENST00000533123 MAP3K1Q13233 1512 aa28.63■■■□□ 2.17
SMPD1-208ENST00000533123 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.63■■■□□ 2.17
SMPD1-208ENST00000533123 HNRNPUL2Q1KMD3 747 aaKnown RBP28.63■■■□□ 2.17
SMPD1-208ENST00000533123 CCDC18Q5T9S5 1454 aa28.62■■■□□ 2.17
SMPD1-208ENST00000533123 ABCC2Q92887 1545 aa28.62■■■□□ 2.17
SMPD1-208ENST00000533123 CFAP43Q8NDM7 1665 aa28.61■■■□□ 2.17
SMPD1-208ENST00000533123 CYB5RLQ6IPT4 315 aa28.58■■■□□ 2.17
SMPD1-208ENST00000533123 ATP10BO94823 1461 aa28.57■■■□□ 2.16
SMPD1-208ENST00000533123 UHRF1BP1LA0JNW5 1464 aa28.57■■■□□ 2.16
SMPD1-208ENST00000533123 LRRC9Q6ZRR7 1453 aa28.55■■■□□ 2.16
SMPD1-208ENST00000533123 ADCY10Q96PN6 1610 aa28.55■■■□□ 2.16
SMPD1-208ENST00000533123 MTUS2Q5JR59 1369 aa28.5■■■□□ 2.15
SMPD1-208ENST00000533123 MAGI3Q5TCQ9 1506 aa28.49■■■□□ 2.15
SMPD1-208ENST00000533123 CDK11AQ9UQ88 783 aaPredicted RBP28.48■■■□□ 2.15
SMPD1-208ENST00000533123 KDM5BQ9UGL1 1544 aa28.47■■■□□ 2.15
SMPD1-208ENST00000533123 ZCCHC11Q5TAX3 1644 aaKnown RBP28.43■■■□□ 2.14
SMPD1-208ENST00000533123 PLEKHD1A6NEE1 506 aa28.43■■■□□ 2.14
SMPD1-208ENST00000533123 EHBP1L1Q8N3D4 1523 aa28.4■■■□□ 2.14
SMPD1-208ENST00000533123 NPM1P06748 294 aaKnown RBP eCLIP28.38■■■□□ 2.13
SMPD1-208ENST00000533123 DNAJC5Q9H3Z4 198 aa28.38■■■□□ 2.13
SMPD1-208ENST00000533123 TROQ12816 1431 aaPredicted RBP28.37■■■□□ 2.13
SMPD1-208ENST00000533123 SUPT6HQ7KZ85 1726 aaKnown RBP28.31■■■□□ 2.12
SMPD1-208ENST00000533123 NCOA2Q15596 1464 aa28.31■■■□□ 2.12
SMPD1-208ENST00000533123 PHLDB1Q86UU1 1377 aa28.28■■■□□ 2.12
SMPD1-208ENST00000533123 KCNH8Q96L42 1107 aa28.28■■■□□ 2.12
SMPD1-208ENST00000533123 KIF14Q15058 1648 aa28.26■■■□□ 2.11
SMPD1-208ENST00000533123 ASXL2Q76L83 1435 aa28.26■■■□□ 2.11
SMPD1-208ENST00000533123 WDR7Q9Y4E6 1490 aa28.22■■■□□ 2.11
SMPD1-208ENST00000533123 CCNB3Q8WWL7 1395 aa28.16■■■□□ 2.1
SMPD1-208ENST00000533123 MYOM3Q5VTT5 1437 aa28.15■■■□□ 2.1
SMPD1-208ENST00000533123 ABCC10Q5T3U5 1492 aa28.14■■■□□ 2.1
SMPD1-208ENST00000533123 HRCP23327 699 aa28.14■■■□□ 2.09
SMPD1-208ENST00000533123 MAPKBP1O60336 1514 aa28.13■■■□□ 2.09
SMPD1-208ENST00000533123 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.12■■■□□ 2.09
SMPD1-208ENST00000533123 RRBP1Q9P2E9 1410 aaKnown RBP28.11■■■□□ 2.09
SMPD1-208ENST00000533123 GPATCH8Q9UKJ3 1502 aaKnown RBP28.09■■■□□ 2.09
SMPD1-208ENST00000533123 TTC37Q6PGP7 1564 aa28.09■■■□□ 2.09
SMPD1-208ENST00000533123 FGD6Q6ZV73 1430 aa28.09■■■□□ 2.09
SMPD1-208ENST00000533123 FAM50AQ14320 339 aaKnown RBP28.05■■■□□ 2.08
SMPD1-208ENST00000533123 CFDP1Q9UEE9 299 aaPredicted RBP28.05■■■□□ 2.08
SMPD1-208ENST00000533123 CDC42BPAQ5VT25 1732 aa28.04■■■□□ 2.08
SMPD1-208ENST00000533123 MIA2Q96PC5 1412 aa28.02■■■□□ 2.08
SMPD1-208ENST00000533123 ITSN2Q9NZM3 1697 aa28.02■■■□□ 2.08
SMPD1-208ENST00000533123 ABCA9Q8IUA7 1624 aa27.99■■■□□ 2.07
SMPD1-208ENST00000533123 ZNF777Q9ULD5 760 aaPredicted RBP27.99■■■□□ 2.07
SMPD1-208ENST00000533123 ZNF644Q9H582 1327 aaPredicted RBP27.99■■■□□ 2.07
SMPD1-208ENST00000533123 PTPN23Q9H3S7 1636 aa27.98■■■□□ 2.07
SMPD1-208ENST00000533123 MYO5CQ9NQX4 1742 aa27.97■■■□□ 2.07
SMPD1-208ENST00000533123 CDC42BPBQ9Y5S2 1711 aa27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 208.7 ms