RNA–Protein interactions for RNA: ENST00000527733.5

USP47-207, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP47, Length 4,525 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-207ENST00000527733 CARMIL2Q6F5E8 1435 aa21.08■□□□□ 0.97
USP47-207ENST00000527733 BCANQ96GW7 911 aa21.06■□□□□ 0.96
USP47-207ENST00000527733 CHGAP10645 457 aaKnown RBP21.05■□□□□ 0.96
USP47-207ENST00000527733 HMGXB3Q12766 1538 aa21.05■□□□□ 0.96
USP47-207ENST00000527733 RUSC2Q8N2Y8 1516 aa21.05■□□□□ 0.96
USP47-207ENST00000527733 CC2D2AQ9P2K1 1620 aa21.04■□□□□ 0.96
USP47-207ENST00000527733 ACIN1Q9UKV3 1341 aaKnown RBP21.03■□□□□ 0.96
USP47-207ENST00000527733 CFTRP13569 1480 aa21.03■□□□□ 0.96
USP47-207ENST00000527733 FGD5Q6ZNL6 1462 aa21.02■□□□□ 0.96
USP47-207ENST00000527733 FMN1Q68DA7 1419 aa21.01■□□□□ 0.95
USP47-207ENST00000527733 STAG3Q9UJ98 1225 aa21.01■□□□□ 0.95
USP47-207ENST00000527733 CCNB3Q8WWL7 1395 aa21■□□□□ 0.95
USP47-207ENST00000527733 IGF1RP08069 1367 aa20.93■□□□□ 0.94
USP47-207ENST00000527733 KANK4Q5T7N3 995 aaPredicted RBP20.93■□□□□ 0.94
USP47-207ENST00000527733 JPH4Q96JJ6 628 aa20.92■□□□□ 0.94
USP47-207ENST00000527733 RAD54L2Q9Y4B4 1467 aa20.92■□□□□ 0.94
USP47-207ENST00000527733 GAPVD1Q14C86 1478 aa20.9■□□□□ 0.94
USP47-207ENST00000527733 FHOD3Q2V2M9 1422 aa20.88■□□□□ 0.93
USP47-207ENST00000527733 NESP48681 1621 aa20.87■□□□□ 0.93
USP47-207ENST00000527733 KDM2AQ9Y2K7 1162 aa20.85■□□□□ 0.93
USP47-207ENST00000527733 PLPPR3Q6T4P5 718 aa20.85■□□□□ 0.93
USP47-207ENST00000527733 ARHGAP35Q9NRY4 1499 aa20.84■□□□□ 0.93
USP47-207ENST00000527733 ERICH6Q7L0X2 663 aa20.79■□□□□ 0.92
USP47-207ENST00000527733 DDX10Q13206 875 aaKnown RBP20.77■□□□□ 0.92
USP47-207ENST00000527733 UNC13AQ9UPW8 1703 aa20.76■□□□□ 0.91
USP47-207ENST00000527733 AQRO60306 1485 aaKnown RBP eCLIP20.75■□□□□ 0.911e-6■■■■□ 24.4
USP47-207ENST00000527733 SYNJ1O43426 1573 aa20.75■□□□□ 0.91
USP47-207ENST00000527733 CLSPNQ9HAW4 1339 aa20.74■□□□□ 0.91
USP47-207ENST00000527733 MRC2Q9UBG0 1479 aa20.72■□□□□ 0.91
USP47-207ENST00000527733 PEG3Q9GZU2 1588 aa20.71■□□□□ 0.91
USP47-207ENST00000527733 EIF4G2P78344 907 aaKnown RBP eCLIP20.7■□□□□ 0.92e-7■■■■□ 23
USP47-207ENST00000527733 RGL3Q3MIN7 710 aa20.7■□□□□ 0.9
USP47-207ENST00000527733 EFCAB2Q5VUJ9 269 aa20.69■□□□□ 0.9
USP47-207ENST00000527733 TOPBP1Q92547 1522 aa20.69■□□□□ 0.9
USP47-207ENST00000527733 DNAJC5BQ9UF47 199 aa20.69■□□□□ 0.9
USP47-207ENST00000527733 ARID4BQ4LE39 1312 aaPredicted RBP20.67■□□□□ 0.9
USP47-207ENST00000527733 PTPRGP23470 1445 aa20.67■□□□□ 0.9
USP47-207ENST00000527733 SETD5Q9C0A6 1442 aa20.67■□□□□ 0.9
USP47-207ENST00000527733 GRIN2BQ13224 1484 aa20.66■□□□□ 0.9
USP47-207ENST00000527733 CUX1P39880 1505 aa20.66■□□□□ 0.9
USP47-207ENST00000527733 TOP2BQ02880 1626 aa20.66■□□□□ 0.9
USP47-207ENST00000527733 OSCARQ8IYS5 282 aa20.65■□□□□ 0.9
USP47-207ENST00000527733 SIN3AQ96ST3 1273 aa20.65■□□□□ 0.9
USP47-207ENST00000527733 CCDC18Q5T9S5 1454 aa20.64■□□□□ 0.89
USP47-207ENST00000527733 POLA1P09884 1462 aaPredicted RBP20.63■□□□□ 0.89
USP47-207ENST00000527733 NEFMP07197 916 aa20.63■□□□□ 0.89
USP47-207ENST00000527733 HIRIP3Q9BW71 556 aaPredicted RBP20.62■□□□□ 0.89
USP47-207ENST00000527733 IFT140Q96RY7 1462 aa20.61■□□□□ 0.89
USP47-207ENST00000527733 PPP1R15AO75807 674 aaPredicted RBP20.59■□□□□ 0.89
USP47-207ENST00000527733 LAMC3Q9Y6N6 1575 aa20.59■□□□□ 0.89
USP47-207ENST00000527733 TRHP20396 242 aaPredicted RBP20.58■□□□□ 0.88
USP47-207ENST00000527733 DNMBPQ6XZF7 1577 aa20.57■□□□□ 0.88
USP47-207ENST00000527733 ERICH3Q5RHP9 1530 aa20.56■□□□□ 0.88
USP47-207ENST00000527733 KANK1Q14678 1352 aa20.56■□□□□ 0.88
USP47-207ENST00000527733 RSPH4AQ5TD94 716 aa20.55■□□□□ 0.88
USP47-207ENST00000527733 KIF21BO75037 1637 aa20.55■□□□□ 0.88
USP47-207ENST00000527733 TIMELESSQ9UNS1 1208 aa20.55■□□□□ 0.88
USP47-207ENST00000527733 ANKRD30AQ9BXX3 1397 aa20.54■□□□□ 0.88
USP47-207ENST00000527733 PRXQ9BXM0 1461 aa20.53■□□□□ 0.88
USP47-207ENST00000527733 RAB3GAP2Q9H2M9 1393 aa20.52■□□□□ 0.88
USP47-207ENST00000527733 CARD11Q9BXL7 1154 aa20.5■□□□□ 0.87
USP47-207ENST00000527733 HNRNPMP52272 730 aaKnown RBP eCLIP20.5■□□□□ 0.87
USP47-207ENST00000527733 PKD2Q13563 968 aa20.48■□□□□ 0.87
USP47-207ENST00000527733 TMC1Q8TDI8 760 aa20.48■□□□□ 0.87
USP47-207ENST00000527733 SENP3Q9H4L4 574 aaPredicted RBP20.48■□□□□ 0.87
USP47-207ENST00000527733 GGT6Q6P531 493 aa20.46■□□□□ 0.87
USP47-207ENST00000527733 FAM9BQ8IZU0 186 aa20.46■□□□□ 0.87
USP47-207ENST00000527733 GTF3C3Q9Y5Q9 886 aa20.45■□□□□ 0.86
USP47-207ENST00000527733 CYB5RLQ6IPT4 315 aa20.44■□□□□ 0.86
USP47-207ENST00000527733 NUP155O75694 1391 aa20.44■□□□□ 0.86
USP47-207ENST00000527733 HNRNPUQ00839 825 aaKnown RBP eCLIP20.44■□□□□ 0.86
USP47-207ENST00000527733 MPHOSPH9Q99550 1183 aa20.44■□□□□ 0.86
USP47-207ENST00000527733 SPAG9O60271 1321 aaKnown RBP20.43■□□□□ 0.86
USP47-207ENST00000527733 CDCA8Q53HL2 280 aa20.42■□□□□ 0.86
USP47-207ENST00000527733 ABCA10Q8WWZ4 1543 aa20.42■□□□□ 0.86
USP47-207ENST00000527733 MLECQ14165 292 aa20.42■□□□□ 0.86
USP47-207ENST00000527733 DCAF11Q8TEB1 546 aa20.42■□□□□ 0.86
USP47-207ENST00000527733 MRS2Q9HD23 443 aa20.41■□□□□ 0.86
USP47-207ENST00000527733 MIER1Q8N108 512 aa20.41■□□□□ 0.86
USP47-207ENST00000527733 DAXXQ9UER7 740 aaPredicted RBP20.4■□□□□ 0.86
USP47-207ENST00000527733 SLC24A1O60721 1099 aa20.39■□□□□ 0.85
USP47-207ENST00000527733 FOXD1Q16676 465 aa20.39■□□□□ 0.85
USP47-207ENST00000527733 CASKIN1Q8WXD9 1431 aa20.38■□□□□ 0.85
USP47-207ENST00000527733 CANXP27824 592 aaKnown RBP20.38■□□□□ 0.85
USP47-207ENST00000527733 SNAPC4Q5SXM2 1469 aa20.37■□□□□ 0.85
USP47-207ENST00000527733 ARAP1Q96P48 1450 aa20.37■□□□□ 0.85
USP47-207ENST00000527733 KIF3BO15066 747 aa20.37■□□□□ 0.85
USP47-207ENST00000527733 WDR43Q15061 677 aaKnown RBP eCLIP20.33■□□□□ 0.846e-6■■■□□ 14.9
USP47-207ENST00000527733 PRG4Q92954 1404 aaPredicted RBP20.33■□□□□ 0.84
USP47-207ENST00000527733 EFCAB5A4FU69 1503 aa20.31■□□□□ 0.84
USP47-207ENST00000527733 LRRC9Q6ZRR7 1453 aa20.3■□□□□ 0.84
USP47-207ENST00000527733 URB2Q14146 1524 aaKnown RBP20.29■□□□□ 0.84
USP47-207ENST00000527733 HDGFP51858 240 aaKnown RBP20.28■□□□□ 0.84
USP47-207ENST00000527733 SALL2Q9Y467 1007 aaPredicted RBP20.28■□□□□ 0.84
USP47-207ENST00000527733 POGKQ9P215 609 aa20.28■□□□□ 0.84
USP47-207ENST00000527733 MYOM3Q5VTT5 1437 aa20.27■□□□□ 0.84
USP47-207ENST00000527733 FYCO1Q9BQS8 1478 aa20.27■□□□□ 0.84
USP47-207ENST00000527733 C14orf37Q86TY3 774 aa20.27■□□□□ 0.84
USP47-207ENST00000527733 KNSTRNQ9Y448 316 aa20.27■□□□□ 0.84
USP47-207ENST00000527733 FGD6Q6ZV73 1430 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms