RNA–Protein interactions for RNA: ENST00000525970.5

CSDE1-211, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 503 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-211ENST00000525970 MS4A3Q96HJ5 214 aa12.96□□□□□ -0.33
CSDE1-211ENST00000525970 RASEFQ8IZ41 740 aa12.92□□□□□ -0.34
CSDE1-211ENST00000525970 FBXO3Q9UK99 471 aa12.92□□□□□ -0.34
CSDE1-211ENST00000525970 KIF12Q96FN5 646 aa12.9□□□□□ -0.34
CSDE1-211ENST00000525970 ASTLQ6HA08 431 aaPredicted RBP12.89□□□□□ -0.35
CSDE1-211ENST00000525970 ATMINO43313 823 aaPredicted RBP12.85□□□□□ -0.35
CSDE1-211ENST00000525970 NUBP1P53384 320 aa12.85□□□□□ -0.35
CSDE1-211ENST00000525970 PELP1Q8IZL8 1130 aaKnown RBP12.83□□□□□ -0.36
CSDE1-211ENST00000525970 MAP3K13O43283 966 aa12.81□□□□□ -0.36
CSDE1-211ENST00000525970 SLC39A7Q92504 469 aa12.81□□□□□ -0.36
CSDE1-211ENST00000525970 C7P10643 843 aa12.79□□□□□ -0.36
CSDE1-211ENST00000525970 FAM212AQ96EL1 285 aa12.79□□□□□ -0.36
CSDE1-211ENST00000525970 SGIP1Q9BQI5 828 aa12.79□□□□□ -0.36
CSDE1-211ENST00000525970 TIE1P35590 1138 aa12.77□□□□□ -0.37
CSDE1-211ENST00000525970 METRNQ9UJH8 293 aa12.77□□□□□ -0.37
CSDE1-211ENST00000525970 ATN1P54259 1190 aaPredicted RBP12.74□□□□□ -0.37
CSDE1-211ENST00000525970 BMP2KQ9NSY1 1161 aaPredicted RBP12.74□□□□□ -0.37
CSDE1-211ENST00000525970 POTEB2H3BUK9 544 aa12.73□□□□□ -0.37
CSDE1-211ENST00000525970 VASPP50552 380 aaPredicted RBP12.71□□□□□ -0.37
CSDE1-211ENST00000525970 PCDHB13Q9Y5F0 798 aa12.71□□□□□ -0.37
CSDE1-211ENST00000525970 TRPC6Q9Y210 931 aa12.7□□□□□ -0.38
CSDE1-211ENST00000525970 OTUD5Q96G74 571 aa12.69□□□□□ -0.38
CSDE1-211ENST00000525970 TTLL13PA6NNM8 815 aa12.66□□□□□ -0.38
CSDE1-211ENST00000525970 DCAF8Q5TAQ9 597 aa12.64□□□□□ -0.39
CSDE1-211ENST00000525970 MAMSTRQ6ZN01 415 aa12.63□□□□□ -0.39
CSDE1-211ENST00000525970 KLHL34Q8N239 644 aa12.63□□□□□ -0.39
CSDE1-211ENST00000525970 IFNL1Q8IU54 200 aa12.62□□□□□ -0.39
CSDE1-211ENST00000525970 GSE1Q14687 1217 aa12.58□□□□□ -0.4
CSDE1-211ENST00000525970 IER5LQ5T953 404 aa12.58□□□□□ -0.4
CSDE1-211ENST00000525970 TRIM35Q9UPQ4 493 aa12.57□□□□□ -0.4
CSDE1-211ENST00000525970 POTEJP0CG39 1038 aa12.56□□□□□ -0.4
CSDE1-211ENST00000525970 POTEFA5A3E0 1075 aa12.55□□□□□ -0.4
CSDE1-211ENST00000525970 PYGBP11216 843 aa12.54□□□□□ -0.4
CSDE1-211ENST00000525970 SEC24BO95487 1268 aa12.53□□□□□ -0.4
CSDE1-211ENST00000525970 TMEM106CQ9BVX2 250 aa12.53□□□□□ -0.4
CSDE1-211ENST00000525970 SCUBE2Q9NQ36 999 aa12.53□□□□□ -0.4
CSDE1-211ENST00000525970 COLQQ9Y215 455 aaPredicted RBP12.49□□□□□ -0.41
CSDE1-211ENST00000525970 CHRM1P11229 460 aaPredicted RBP12.47□□□□□ -0.41
CSDE1-211ENST00000525970 ZNF467Q7Z7K2 595 aaPredicted RBP12.46□□□□□ -0.41
CSDE1-211ENST00000525970 SPOCK2Q92563 424 aa12.46□□□□□ -0.41
CSDE1-211ENST00000525970 IFNLR1Q8IU57 520 aaPredicted RBP12.45□□□□□ -0.42
CSDE1-211ENST00000525970 PCDHB8Q9UN66 801 aa12.45□□□□□ -0.42
CSDE1-211ENST00000525970 PLCG2P16885 1265 aa12.41□□□□□ -0.42
CSDE1-211ENST00000525970 IRX5P78411 483 aaPredicted RBP12.39□□□□□ -0.43
CSDE1-211ENST00000525970 OCEL1Q9H607 264 aa12.35□□□□□ -0.43
CSDE1-211ENST00000525970 CIZ1Q9ULV3 898 aaPredicted RBP12.33□□□□□ -0.44
CSDE1-211ENST00000525970 POTEMA6NI47 508 aa12.32□□□□□ -0.44
CSDE1-211ENST00000525970 PSEN1P49768 467 aa12.3□□□□□ -0.44
CSDE1-211ENST00000525970 POTEGQ6S5H5 508 aa12.3□□□□□ -0.44
CSDE1-211ENST00000525970 GOLGA2Q08379 1002 aa12.29□□□□□ -0.44
CSDE1-211ENST00000525970 PDAP1Q13442 181 aaKnown RBP12.29□□□□□ -0.44
CSDE1-211ENST00000525970 TRIM41Q8WV44 630 aa12.28□□□□□ -0.44
CSDE1-211ENST00000525970 MKRN3Q13064 507 aaKnown RBP12.27□□□□□ -0.45
CSDE1-211ENST00000525970 FAM163AQ96GL9 167 aaPredicted RBP12.26□□□□□ -0.45
CSDE1-211ENST00000525970 LCE2DQ5TA82 110 aaPredicted RBP12.24□□□□□ -0.45
CSDE1-211ENST00000525970 SLAIN1Q8ND83 568 aa12.24□□□□□ -0.45
CSDE1-211ENST00000525970 PCDH10Q9P2E7 1040 aa12.23□□□□□ -0.45
CSDE1-211ENST00000525970 PDCD7Q8N8D1 485 aaKnown RBP12.21□□□□□ -0.45
CSDE1-211ENST00000525970 L3MBTL3Q96JM7 780 aaPredicted RBP12.18□□□□□ -0.46
CSDE1-211ENST00000525970 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.18□□□□□ -0.462e-11■□□□□ 9.9
CSDE1-211ENST00000525970 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.18□□□□□ -0.46
CSDE1-211ENST00000525970 ILDR1Q86SU0 546 aaPredicted RBP12.16□□□□□ -0.46
CSDE1-211ENST00000525970 PLSCR2Q9NRY7 297 aa12.14□□□□□ -0.47
CSDE1-211ENST00000525970 CABP2Q9NPB3 220 aa12.13□□□□□ -0.47
CSDE1-211ENST00000525970 C3orf67Q6ZVT6 689 aa12.11□□□□□ -0.47
CSDE1-211ENST00000525970 SNPHO15079 494 aa12.1□□□□□ -0.47
CSDE1-211ENST00000525970 ST18O60284 1047 aa12.06□□□□□ -0.48
CSDE1-211ENST00000525970 RIOK3O14730 519 aaKnown RBP12.05□□□□□ -0.48
CSDE1-211ENST00000525970 TMEM121BQ9BXQ6 578 aaPredicted RBP12.04□□□□□ -0.48
CSDE1-211ENST00000525970 G3V3G9 751 aa12.02□□□□□ -0.49
CSDE1-211ENST00000525970 VGFO15240 615 aaPredicted RBP12.01□□□□□ -0.49
CSDE1-211ENST00000525970 DPY19L2Q6NUT2 758 aa12□□□□□ -0.49
CSDE1-211ENST00000525970 RNF25Q96BH1 459 aaPredicted RBP12□□□□□ -0.49
CSDE1-211ENST00000525970 BOLA1Q9Y3E2 137 aa12□□□□□ -0.49
CSDE1-211ENST00000525970 EFCAB3Q8N7B9 438 aa11.99□□□□□ -0.49
CSDE1-211ENST00000525970 TAOK2Q9UL54 1235 aa11.96□□□□□ -0.49
CSDE1-211ENST00000525970 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.95□□□□□ -0.5
CSDE1-211ENST00000525970 SOX12O15370 315 aa11.95□□□□□ -0.5
CSDE1-211ENST00000525970 CDAN1Q8IWY9 1227 aa11.95□□□□□ -0.5
CSDE1-211ENST00000525970 ZFP91Q96JP5 570 aaPredicted RBP11.95□□□□□ -0.5
CSDE1-211ENST00000525970 MARVELD3Q96A59 401 aa11.84□□□□□ -0.51
CSDE1-211ENST00000525970 ECM2O94769 699 aaPredicted RBP11.83□□□□□ -0.52
CSDE1-211ENST00000525970 MICALL2Q8IY33 904 aa11.83□□□□□ -0.52
CSDE1-211ENST00000525970 PHF8Q9UPP1 1060 aa11.83□□□□□ -0.52
CSDE1-211ENST00000525970 MS4A4AQ96JQ5 239 aa11.82□□□□□ -0.52
CSDE1-211ENST00000525970 BCL11BQ9C0K0 894 aaPredicted RBP11.82□□□□□ -0.52
CSDE1-211ENST00000525970 EMP3P54852 163 aa11.81□□□□□ -0.52
CSDE1-211ENST00000525970 NLRP6P59044 892 aa11.81□□□□□ -0.52
CSDE1-211ENST00000525970 HOXB3P14651 431 aaPredicted RBP11.8□□□□□ -0.52
CSDE1-211ENST00000525970 DOK7Q18PE1 504 aa11.79□□□□□ -0.52
CSDE1-211ENST00000525970 PKD2Q13563 968 aa11.78□□□□□ -0.52
CSDE1-211ENST00000525970 STK24Q9Y6E0 443 aa11.78□□□□□ -0.52
CSDE1-211ENST00000525970 STK25O00506 426 aa11.75□□□□□ -0.53
CSDE1-211ENST00000525970 ZNF710Q8N1W2 664 aa11.75□□□□□ -0.53
CSDE1-211ENST00000525970 FBXO22Q8NEZ5 403 aa11.75□□□□□ -0.53
CSDE1-211ENST00000525970 RIMBP2O15034 1052 aa11.74□□□□□ -0.53
CSDE1-211ENST00000525970 HOXB1P14653 301 aaPredicted RBP11.74□□□□□ -0.53
CSDE1-211ENST00000525970 TMEM92Q6UXU6 159 aa11.73□□□□□ -0.53
CSDE1-211ENST00000525970 RGL2O15211 777 aa11.72□□□□□ -0.53
CSDE1-211ENST00000525970 HS3ST6Q96QI5 342 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms