RNA–Protein interactions for RNA: ENST00000522855.5

SKP1-210, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS P4 TSL 2 BASIC

Gene SKP1, Length 802 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-210ENST00000522855 MS4A3Q96HJ5 214 aa11.67□□□□□ -0.54
SKP1-210ENST00000522855 ZBTB47Q9UFB7 747 aaPredicted RBP11.67□□□□□ -0.54
SKP1-210ENST00000522855 KIF12Q96FN5 646 aa11.64□□□□□ -0.55
SKP1-210ENST00000522855 DCBLD2Q96PD2 775 aa11.64□□□□□ -0.55
SKP1-210ENST00000522855 VASPP50552 380 aaPredicted RBP11.63□□□□□ -0.55
SKP1-210ENST00000522855 ASTLQ6HA08 431 aaPredicted RBP11.58□□□□□ -0.56
SKP1-210ENST00000522855 LHX8Q68G74 356 aa11.57□□□□□ -0.56
SKP1-210ENST00000522855 MAP3K13O43283 966 aa11.55□□□□□ -0.56
SKP1-210ENST00000522855 PELP1Q8IZL8 1130 aaKnown RBP11.55□□□□□ -0.56
SKP1-210ENST00000522855 ATMINO43313 823 aaPredicted RBP11.53□□□□□ -0.56
SKP1-210ENST00000522855 TRPC6Q9Y210 931 aa11.53□□□□□ -0.56
SKP1-210ENST00000522855 FAM212AQ96EL1 285 aa11.52□□□□□ -0.57
SKP1-210ENST00000522855 SGIP1Q9BQI5 828 aa11.49□□□□□ -0.57
SKP1-210ENST00000522855 BMP2KQ9NSY1 1161 aaPredicted RBP11.47□□□□□ -0.57
SKP1-210ENST00000522855 IFNLR1Q8IU57 520 aaPredicted RBP11.46□□□□□ -0.57
SKP1-210ENST00000522855 TIE1P35590 1138 aa11.45□□□□□ -0.58
SKP1-210ENST00000522855 ATN1P54259 1190 aaPredicted RBP11.45□□□□□ -0.58
SKP1-210ENST00000522855 POTEB2H3BUK9 544 aa11.44□□□□□ -0.58
SKP1-210ENST00000522855 AMER1Q5JTC6 1135 aaPredicted RBP11.44□□□□□ -0.58
SKP1-210ENST00000522855 PCDHB13Q9Y5F0 798 aa11.43□□□□□ -0.58
SKP1-210ENST00000522855 IFNL1Q8IU54 200 aa11.42□□□□□ -0.58
SKP1-210ENST00000522855 SLC39A7Q92504 469 aa11.41□□□□□ -0.58
SKP1-210ENST00000522855 METRNQ9UJH8 293 aa11.41□□□□□ -0.58
SKP1-210ENST00000522855 KLHL34Q8N239 644 aa11.4□□□□□ -0.58
SKP1-210ENST00000522855 TTLL13PA6NNM8 815 aa11.39□□□□□ -0.59
SKP1-210ENST00000522855 DCAF8Q5TAQ9 597 aa11.39□□□□□ -0.59
SKP1-210ENST00000522855 C7P10643 843 aa11.38□□□□□ -0.59
SKP1-210ENST00000522855 PYGBP11216 843 aa11.37□□□□□ -0.59
SKP1-210ENST00000522855 POTEFA5A3E0 1075 aa11.36□□□□□ -0.59
SKP1-210ENST00000522855 GSE1Q14687 1217 aa11.35□□□□□ -0.59
SKP1-210ENST00000522855 POTEJP0CG39 1038 aa11.33□□□□□ -0.6
SKP1-210ENST00000522855 SPOCK2Q92563 424 aa11.33□□□□□ -0.6
SKP1-210ENST00000522855 OTUD5Q96G74 571 aa11.33□□□□□ -0.6
SKP1-210ENST00000522855 CHRM1P11229 460 aaPredicted RBP11.31□□□□□ -0.6
SKP1-210ENST00000522855 RTN4Q9NQC3 1192 aaKnown RBP11.31□□□□□ -0.6
SKP1-210ENST00000522855 TRIM35Q9UPQ4 493 aa11.3□□□□□ -0.6
SKP1-210ENST00000522855 PCDHB8Q9UN66 801 aa11.28□□□□□ -0.6
SKP1-210ENST00000522855 TMEM106CQ9BVX2 250 aa11.27□□□□□ -0.61
SKP1-210ENST00000522855 IER5LQ5T953 404 aa11.26□□□□□ -0.61
SKP1-210ENST00000522855 COLQQ9Y215 455 aaPredicted RBP11.26□□□□□ -0.61
SKP1-210ENST00000522855 ZNF467Q7Z7K2 595 aaPredicted RBP11.22□□□□□ -0.61
SKP1-210ENST00000522855 IRX5P78411 483 aaPredicted RBP11.18□□□□□ -0.62
SKP1-210ENST00000522855 CIZ1Q9ULV3 898 aaPredicted RBP11.18□□□□□ -0.62
SKP1-210ENST00000522855 SEC24BO95487 1268 aa11.13□□□□□ -0.63
SKP1-210ENST00000522855 MAMSTRQ6ZN01 415 aa11.13□□□□□ -0.63
SKP1-210ENST00000522855 PSEN1P49768 467 aa11.12□□□□□ -0.63
SKP1-210ENST00000522855 TRIM41Q8WV44 630 aa11.12□□□□□ -0.63
SKP1-210ENST00000522855 PDAP1Q13442 181 aaKnown RBP11.1□□□□□ -0.63
SKP1-210ENST00000522855 PLCG2P16885 1265 aa11.08□□□□□ -0.64
SKP1-210ENST00000522855 SCUBE2Q9NQ36 999 aa11.08□□□□□ -0.64
SKP1-210ENST00000522855 PDCD7Q8N8D1 485 aaKnown RBP11.07□□□□□ -0.64
SKP1-210ENST00000522855 RNF25Q96BH1 459 aaPredicted RBP11.07□□□□□ -0.64
SKP1-210ENST00000522855 OCEL1Q9H607 264 aa11.07□□□□□ -0.64
SKP1-210ENST00000522855 ILDR1Q86SU0 546 aaPredicted RBP11.06□□□□□ -0.64
SKP1-210ENST00000522855 LCE2DQ5TA82 110 aaPredicted RBP11.02□□□□□ -0.65
SKP1-210ENST00000522855 MKRN3Q13064 507 aaKnown RBP10.98□□□□□ -0.65
SKP1-210ENST00000522855 CABP2Q9NPB3 220 aa10.97□□□□□ -0.65
SKP1-210ENST00000522855 RIOK3O14730 519 aaKnown RBP10.96□□□□□ -0.65
SKP1-210ENST00000522855 GOLGA2Q08379 1002 aa10.96□□□□□ -0.65
SKP1-210ENST00000522855 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.94□□□□□ -0.663e-9■■□□□ 13.9
SKP1-210ENST00000522855 PKD2Q13563 968 aa10.91□□□□□ -0.66
SKP1-210ENST00000522855 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.9□□□□□ -0.66
SKP1-210ENST00000522855 VGFO15240 615 aaPredicted RBP10.9□□□□□ -0.66
SKP1-210ENST00000522855 SLAIN1Q8ND83 568 aa10.9□□□□□ -0.66
SKP1-210ENST00000522855 ZFP91Q96JP5 570 aaPredicted RBP10.9□□□□□ -0.66
SKP1-210ENST00000522855 EFCAB3Q8N7B9 438 aa10.89□□□□□ -0.67
SKP1-210ENST00000522855 POTEMA6NI47 508 aa10.88□□□□□ -0.67
SKP1-210ENST00000522855 DPY19L2Q6NUT2 758 aa10.88□□□□□ -0.67
SKP1-210ENST00000522855 SLC24A1O60721 1099 aa10.87□□□□□ -0.67
SKP1-210ENST00000522855 POTEGQ6S5H5 508 aa10.86□□□□□ -0.67
SKP1-210ENST00000522855 L3MBTL3Q96JM7 780 aaPredicted RBP10.86□□□□□ -0.67
SKP1-210ENST00000522855 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.85□□□□□ -0.67
SKP1-210ENST00000522855 ECM2O94769 699 aaPredicted RBP10.83□□□□□ -0.68
SKP1-210ENST00000522855 FAM163AQ96GL9 167 aaPredicted RBP10.82□□□□□ -0.68
SKP1-210ENST00000522855 RGL2O15211 777 aa10.81□□□□□ -0.68
SKP1-210ENST00000522855 C3orf67Q6ZVT6 689 aa10.81□□□□□ -0.68
SKP1-210ENST00000522855 MS4A4AQ96JQ5 239 aa10.81□□□□□ -0.68
SKP1-210ENST00000522855 TMEM121BQ9BXQ6 578 aaPredicted RBP10.81□□□□□ -0.68
SKP1-210ENST00000522855 BOLA1Q9Y3E2 137 aa10.8□□□□□ -0.68
SKP1-210ENST00000522855 SOX12O15370 315 aa10.79□□□□□ -0.68
SKP1-210ENST00000522855 ST18O60284 1047 aa10.77□□□□□ -0.69
SKP1-210ENST00000522855 BCL11BQ9C0K0 894 aaPredicted RBP10.77□□□□□ -0.69
SKP1-210ENST00000522855 PHF8Q9UPP1 1060 aa10.76□□□□□ -0.69
SKP1-210ENST00000522855 FBXO22Q8NEZ5 403 aa10.75□□□□□ -0.69
SKP1-210ENST00000522855 TAOK2Q9UL54 1235 aa10.74□□□□□ -0.69
SKP1-210ENST00000522855 MICALL2Q8IY33 904 aa10.72□□□□□ -0.69
SKP1-210ENST00000522855 MFRPQ9BY79 579 aa10.71□□□□□ -0.69
SKP1-210ENST00000522855 STK24Q9Y6E0 443 aa10.71□□□□□ -0.69
SKP1-210ENST00000522855 STK25O00506 426 aa10.7□□□□□ -0.7
SKP1-210ENST00000522855 SNPHO15079 494 aa10.7□□□□□ -0.7
SKP1-210ENST00000522855 DCAF8L2P0C7V8 631 aa10.69□□□□□ -0.7
SKP1-210ENST00000522855 TMEM92Q6UXU6 159 aa10.69□□□□□ -0.7
SKP1-210ENST00000522855 PCDH10Q9P2E7 1040 aa10.69□□□□□ -0.7
SKP1-210ENST00000522855 G3V3G9 751 aa10.67□□□□□ -0.7
SKP1-210ENST00000522855 NLRP6P59044 892 aa10.67□□□□□ -0.7
SKP1-210ENST00000522855 HOXB3P14651 431 aaPredicted RBP10.65□□□□□ -0.7
SKP1-210ENST00000522855 HS6ST3Q8IZP7 471 aa10.6□□□□□ -0.71
SKP1-210ENST00000522855 MARVELD3Q96A59 401 aa10.58□□□□□ -0.72
SKP1-210ENST00000522855 CDAN1Q8IWY9 1227 aa10.57□□□□□ -0.72
SKP1-210ENST00000522855 PLSCR2Q9NRY7 297 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms