RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 UBTFP17480 764 aaKnown RBP26.53■■□□□ 1.84
LSM1-204ENST00000522515 CTTNBP2Q8WZ74 1663 aa26.5■■□□□ 1.83
LSM1-204ENST00000522515 KIAA0586Q9BVV6 1533 aa26.49■■□□□ 1.83
LSM1-204ENST00000522515 CLASP1Q7Z460 1538 aa26.48■■□□□ 1.83
LSM1-204ENST00000522515 IQGAP2Q13576 1575 aa26.43■■□□□ 1.82
LSM1-204ENST00000522515 TNIKQ9UKE5 1360 aa26.4■■□□□ 1.82
LSM1-204ENST00000522515 JPH4Q96JJ6 628 aa26.36■■□□□ 1.81
LSM1-204ENST00000522515 SHROOM2Q13796 1616 aa26.33■■□□□ 1.81
LSM1-204ENST00000522515 RANGAP1P46060 587 aaPredicted RBP26.32■■□□□ 1.8
LSM1-204ENST00000522515 UGGT2Q9NYU1 1516 aa26.3■■□□□ 1.8
LSM1-204ENST00000522515 PRG4Q92954 1404 aaPredicted RBP26.26■■□□□ 1.79
LSM1-204ENST00000522515 DISP1Q96F81 1524 aa26.22■■□□□ 1.79
LSM1-204ENST00000522515 ERCC6L2Q5T890 1561 aa26.21■■□□□ 1.79
LSM1-204ENST00000522515 CEP162Q5TB80 1403 aa26.21■■□□□ 1.79
LSM1-204ENST00000522515 SAMD9Q5K651 1589 aa26.19■■□□□ 1.78
LSM1-204ENST00000522515 CLIP1P30622 1438 aa26.18■■□□□ 1.78
LSM1-204ENST00000522515 CARMIL2Q6F5E8 1435 aa26.18■■□□□ 1.78
LSM1-204ENST00000522515 KIAA0556O60303 1618 aa26.18■■□□□ 1.78
LSM1-204ENST00000522515 EFCAB5A4FU69 1503 aa26.16■■□□□ 1.78
LSM1-204ENST00000522515 ARHGAP35Q9NRY4 1499 aa26.16■■□□□ 1.78
LSM1-204ENST00000522515 P3H3Q8IVL6 736 aa26.16■■□□□ 1.78
LSM1-204ENST00000522515 ARHGEF11O15085 1522 aa26.15■■□□□ 1.78
LSM1-204ENST00000522515 DNAJC5Q9H3Z4 198 aa26.09■■□□□ 1.77
LSM1-204ENST00000522515 RIMBP3CA6NJZ7 1639 aa26.09■■□□□ 1.77
LSM1-204ENST00000522515 RIMBP3BA6NNM3 1639 aa26.09■■□□□ 1.77
LSM1-204ENST00000522515 RIMBP3Q9UFD9 1639 aa26.09■■□□□ 1.77
LSM1-204ENST00000522515 FHOD3Q2V2M9 1422 aa26.08■■□□□ 1.77
LSM1-204ENST00000522515 ARAP1Q96P48 1450 aa26.05■■□□□ 1.76
LSM1-204ENST00000522515 TTBK1Q5TCY1 1321 aaPredicted RBP26.04■■□□□ 1.76
LSM1-204ENST00000522515 PTPRGP23470 1445 aa26■■□□□ 1.75
LSM1-204ENST00000522515 FMN1Q68DA7 1419 aa25.92■■□□□ 1.74
LSM1-204ENST00000522515 CYB5RLQ6IPT4 315 aa25.9■■□□□ 1.74
LSM1-204ENST00000522515 PLB1Q6P1J6 1458 aa25.88■■□□□ 1.73
LSM1-204ENST00000522515 ABCA8O94911 1581 aa25.85■■□□□ 1.73
LSM1-204ENST00000522515 UACAQ9BZF9 1416 aa25.85■■□□□ 1.73
LSM1-204ENST00000522515 VPS8Q8N3P4 1428 aa25.84■■□□□ 1.73
LSM1-204ENST00000522515 RAPGEF6Q8TEU7 1601 aa25.83■■□□□ 1.72
LSM1-204ENST00000522515 PCF11O94913 1555 aaKnown RBP25.81■■□□□ 1.72
LSM1-204ENST00000522515 ABCC2Q92887 1545 aa25.79■■□□□ 1.72
LSM1-204ENST00000522515 CASKIN1Q8WXD9 1431 aa25.79■■□□□ 1.72
LSM1-204ENST00000522515 ADCY10Q96PN6 1610 aa25.78■■□□□ 1.72
LSM1-204ENST00000522515 UHRF1BP1LA0JNW5 1464 aa25.77■■□□□ 1.72
LSM1-204ENST00000522515 ATP1B4Q9UN42 357 aaPredicted RBP25.77■■□□□ 1.72
LSM1-204ENST00000522515 NUP153P49790 1475 aaKnown RBP25.75■■□□□ 1.71
LSM1-204ENST00000522515 FYCO1Q9BQS8 1478 aa25.75■■□□□ 1.71
LSM1-204ENST00000522515 HECW1Q76N89 1606 aa25.73■■□□□ 1.71
LSM1-204ENST00000522515 ARID3CA6NKF2 412 aa25.71■■□□□ 1.71
LSM1-204ENST00000522515 LRRIQ1Q96JM4 1722 aa25.68■■□□□ 1.7
LSM1-204ENST00000522515 EPRSP07814 1512 aaKnown RBP25.66■■□□□ 1.7
LSM1-204ENST00000522515 KDM5BQ9UGL1 1544 aa25.66■■□□□ 1.7
LSM1-204ENST00000522515 ATP10BO94823 1461 aa25.65■■□□□ 1.7
LSM1-204ENST00000522515 CDK13Q14004 1512 aaKnown RBP25.64■■□□□ 1.7
LSM1-204ENST00000522515 ZCCHC11Q5TAX3 1644 aaKnown RBP25.63■■□□□ 1.69
LSM1-204ENST00000522515 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.61■■□□□ 1.69
LSM1-204ENST00000522515 NPM1P06748 294 aaKnown RBP eCLIP25.61■■□□□ 1.69
LSM1-204ENST00000522515 HNRNPUL2Q1KMD3 747 aaKnown RBP25.61■■□□□ 1.69
LSM1-204ENST00000522515 CCDC18Q5T9S5 1454 aa25.6■■□□□ 1.69
LSM1-204ENST00000522515 TIAM1Q13009 1591 aa25.54■■□□□ 1.68
LSM1-204ENST00000522515 CFAP43Q8NDM7 1665 aa25.54■■□□□ 1.68
LSM1-204ENST00000522515 APLP2Q06481 763 aa25.53■■□□□ 1.68
LSM1-204ENST00000522515 MAP3K1Q13233 1512 aa25.52■■□□□ 1.68
LSM1-204ENST00000522515 ASXL2Q76L83 1435 aa25.49■■□□□ 1.67
LSM1-204ENST00000522515 MAPKBP1O60336 1514 aa25.48■■□□□ 1.67
LSM1-204ENST00000522515 PLEKHD1A6NEE1 506 aa25.48■■□□□ 1.67
LSM1-204ENST00000522515 CDK11AQ9UQ88 783 aaPredicted RBP25.48■■□□□ 1.67
LSM1-204ENST00000522515 MAGI3Q5TCQ9 1506 aa25.48■■□□□ 1.67
LSM1-204ENST00000522515 KANK4Q5T7N3 995 aaPredicted RBP25.45■■□□□ 1.66
LSM1-204ENST00000522515 WDR7Q9Y4E6 1490 aa25.44■■□□□ 1.66
LSM1-204ENST00000522515 LRRC9Q6ZRR7 1453 aa25.43■■□□□ 1.66
LSM1-204ENST00000522515 MTUS2Q5JR59 1369 aa25.42■■□□□ 1.66
LSM1-204ENST00000522515 TROQ12816 1431 aaPredicted RBP25.42■■□□□ 1.66
LSM1-204ENST00000522515 EHBP1L1Q8N3D4 1523 aa25.38■■□□□ 1.65
LSM1-204ENST00000522515 KCNH8Q96L42 1107 aa25.38■■□□□ 1.65
LSM1-204ENST00000522515 PPARGC1BQ86YN6 1023 aaKnown RBP25.37■■□□□ 1.65
LSM1-204ENST00000522515 KIF14Q15058 1648 aa25.34■■□□□ 1.65
LSM1-204ENST00000522515 ABCC10Q5T3U5 1492 aa25.3■■□□□ 1.64
LSM1-204ENST00000522515 DIP2BQ9P265 1576 aa25.29■■□□□ 1.64
LSM1-204ENST00000522515 SUPT6HQ7KZ85 1726 aaKnown RBP25.28■■□□□ 1.64
LSM1-204ENST00000522515 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.27■■□□□ 1.64
LSM1-204ENST00000522515 NCOA2Q15596 1464 aa25.25■■□□□ 1.63
LSM1-204ENST00000522515 FAM69CQ0P6D2 419 aa25.25■■□□□ 1.63
LSM1-204ENST00000522515 TTC37Q6PGP7 1564 aa25.24■■□□□ 1.63
LSM1-204ENST00000522515 ABCA9Q8IUA7 1624 aa25.24■■□□□ 1.63
LSM1-204ENST00000522515 GLI2P10070 1586 aa25.24■■□□□ 1.63
LSM1-204ENST00000522515 KIF13AQ9H1H9 1805 aa25.22■■□□□ 1.63
LSM1-204ENST00000522515 TRHP20396 242 aaPredicted RBP25.17■■□□□ 1.62
LSM1-204ENST00000522515 MAP3K4Q9Y6R4 1608 aa25.17■■□□□ 1.62
LSM1-204ENST00000522515 CCNB3Q8WWL7 1395 aa25.16■■□□□ 1.62
LSM1-204ENST00000522515 CD109Q6YHK3 1445 aa25.16■■□□□ 1.62
LSM1-204ENST00000522515 PHLDB1Q86UU1 1377 aa25.15■■□□□ 1.62
LSM1-204ENST00000522515 GPATCH8Q9UKJ3 1502 aaKnown RBP25.14■■□□□ 1.62
LSM1-204ENST00000522515 CDC42BPAQ5VT25 1732 aa25.14■■□□□ 1.62
LSM1-204ENST00000522515 MYO5CQ9NQX4 1742 aa25.14■■□□□ 1.61
LSM1-204ENST00000522515 PLCH2O75038 1416 aa25.11■■□□□ 1.61
LSM1-204ENST00000522515 PREX2Q70Z35 1606 aa25.11■■□□□ 1.61
LSM1-204ENST00000522515 MYOM3Q5VTT5 1437 aa25.1■■□□□ 1.61
LSM1-204ENST00000522515 CDC42BPBQ9Y5S2 1711 aa25.09■■□□□ 1.61
LSM1-204ENST00000522515 ITSN2Q9NZM3 1697 aa25.09■■□□□ 1.61
LSM1-204ENST00000522515 TSPOAP1O95153 1857 aa25.07■■□□□ 1.6
LSM1-204ENST00000522515 ARHGAP5Q13017 1502 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms