RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 KDM2AQ9Y2K7 1162 aa21.92■■□□□ 1.1
USP42-207ENST00000521713 MROH2BQ7Z745 1585 aa21.9■■□□□ 1.1
USP42-207ENST00000521713 PPP1R15AO75807 674 aaPredicted RBP21.87■■□□□ 1.09
USP42-207ENST00000521713 FHAD1B1AJZ9 1412 aa21.85■■□□□ 1.09
USP42-207ENST00000521713 ARID4BQ4LE39 1312 aaPredicted RBP21.84■■□□□ 1.09
USP42-207ENST00000521713 CCDC88BA6NC98 1476 aa21.84■■□□□ 1.09
USP42-207ENST00000521713 DDX10Q13206 875 aaKnown RBP21.81■■□□□ 1.08
USP42-207ENST00000521713 EIF5BO60841 1220 aaKnown RBP21.79■■□□□ 1.08
USP42-207ENST00000521713 SCAF1Q9H7N4 1312 aaKnown RBP21.78■■□□□ 1.08
USP42-207ENST00000521713 EIF4G2P78344 907 aaKnown RBP eCLIP21.75■■□□□ 1.07
USP42-207ENST00000521713 SOGA1O94964 1423 aa21.75■■□□□ 1.07
USP42-207ENST00000521713 TMC1Q8TDI8 760 aa21.75■■□□□ 1.07
USP42-207ENST00000521713 FKBP8Q14318 412 aa21.74■■□□□ 1.07
USP42-207ENST00000521713 CCNB3Q8WWL7 1395 aa21.74■■□□□ 1.07
USP42-207ENST00000521713 CADPSQ9ULU8 1353 aa21.74■■□□□ 1.07
USP42-207ENST00000521713 EIF4G1Q04637 1599 aaKnown RBP21.74■■□□□ 1.07
USP42-207ENST00000521713 CARMIL2Q6F5E8 1435 aa21.72■■□□□ 1.07
USP42-207ENST00000521713 BCL11AQ9H165 835 aa21.7■■□□□ 1.06
USP42-207ENST00000521713 WDR43Q15061 677 aaKnown RBP eCLIP21.68■■□□□ 1.06
USP42-207ENST00000521713 RGL3Q3MIN7 710 aa21.68■■□□□ 1.06
USP42-207ENST00000521713 FAM9BQ8IZU0 186 aa21.67■■□□□ 1.06
USP42-207ENST00000521713 ANP32BQ92688 251 aaKnown RBP21.67■■□□□ 1.06
USP42-207ENST00000521713 HNRNPUQ00839 825 aaKnown RBP eCLIP21.67■■□□□ 1.06
USP42-207ENST00000521713 C14orf37Q86TY3 774 aa21.67■■□□□ 1.06
USP42-207ENST00000521713 TDRD9Q8NDG6 1382 aaKnown RBP21.66■■□□□ 1.06
USP42-207ENST00000521713 TOP2AP11388 1531 aaKnown RBP21.65■■□□□ 1.06
USP42-207ENST00000521713 CDCA8Q53HL2 280 aa21.64■■□□□ 1.05
USP42-207ENST00000521713 ATAD2BQ9ULI0 1458 aa21.63■■□□□ 1.05
USP42-207ENST00000521713 TRHP20396 242 aaPredicted RBP21.63■■□□□ 1.05
USP42-207ENST00000521713 MRS2Q9HD23 443 aa21.58■■□□□ 1.05
USP42-207ENST00000521713 NPM2Q86SE8 214 aaKnown RBP21.56■■□□□ 1.04
USP42-207ENST00000521713 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.55■■□□□ 1.04
USP42-207ENST00000521713 KANK1Q14678 1352 aa21.54■■□□□ 1.04
USP42-207ENST00000521713 SALL2Q9Y467 1007 aaPredicted RBP21.53■■□□□ 1.04
USP42-207ENST00000521713 ANP32EQ9BTT0 268 aa21.53■■□□□ 1.04
USP42-207ENST00000521713 SENP3Q9H4L4 574 aaPredicted RBP21.53■■□□□ 1.04
USP42-207ENST00000521713 ABCC8Q09428 1581 aa21.51■■□□□ 1.03
USP42-207ENST00000521713 FMN1Q68DA7 1419 aa21.51■■□□□ 1.03
USP42-207ENST00000521713 CARD11Q9BXL7 1154 aa21.5■■□□□ 1.03
USP42-207ENST00000521713 HDGFP51858 240 aaKnown RBP21.49■■□□□ 1.03
USP42-207ENST00000521713 WIZO95785 1651 aa21.48■■□□□ 1.03
USP42-207ENST00000521713 UPF2Q9HAU5 1272 aaKnown RBP21.48■■□□□ 1.03
USP42-207ENST00000521713 VPS8Q8N3P4 1428 aa21.47■■□□□ 1.03
USP42-207ENST00000521713 HIRIP3Q9BW71 556 aaPredicted RBP21.47■■□□□ 1.03
USP42-207ENST00000521713 EFCAB2Q5VUJ9 269 aa21.46■■□□□ 1.03
USP42-207ENST00000521713 CFAP53Q96M91 514 aa21.46■■□□□ 1.03
USP42-207ENST00000521713 POGKQ9P215 609 aa21.45■■□□□ 1.02
USP42-207ENST00000521713 SMARCA4P51532 1647 aa21.45■■□□□ 1.02
USP42-207ENST00000521713 KNSTRNQ9Y448 316 aa21.44■■□□□ 1.02
USP42-207ENST00000521713 ZBTB7CA1YPR0 619 aa21.43■■□□□ 1.02
USP42-207ENST00000521713 HAP1P54257 671 aaPredicted RBP21.43■■□□□ 1.02
USP42-207ENST00000521713 ARHGAP35Q9NRY4 1499 aa21.41■■□□□ 1.02
USP42-207ENST00000521713 RAPGEF2Q9Y4G8 1499 aa21.39■■□□□ 1.02
USP42-207ENST00000521713 MLECQ14165 292 aa21.39■■□□□ 1.01
USP42-207ENST00000521713 NBR1Q14596 966 aa21.38■■□□□ 1.01
USP42-207ENST00000521713 FANCD2Q9BXW9 1451 aa21.38■■□□□ 1.01
USP42-207ENST00000521713 CCDC136Q96JN2 1154 aa21.38■■□□□ 1.01
USP42-207ENST00000521713 A0A0G2JS52 829 aa21.37■■□□□ 1.01
USP42-207ENST00000521713 JPH4Q96JJ6 628 aa21.37■■□□□ 1.01
USP42-207ENST00000521713 PLEKHG5O94827 1062 aa21.36■■□□□ 1.01
USP42-207ENST00000521713 TIMELESSQ9UNS1 1208 aa21.35■■□□□ 1.01
USP42-207ENST00000521713 GGT6Q6P531 493 aa21.35■■□□□ 1.01
USP42-207ENST00000521713 SIN3AQ96ST3 1273 aa21.32■■□□□ 1
USP42-207ENST00000521713 HSP90AA1P07900 732 aaKnown RBP21.31■■□□□ 1
USP42-207ENST00000521713 MIER1Q8N108 512 aa21.3■■□□□ 1
USP42-207ENST00000521713 RSPH4AQ5TD94 716 aa21.3■■□□□ 1
USP42-207ENST00000521713 DCAF11Q8TEB1 546 aa21.29■■□□□ 1
USP42-207ENST00000521713 MYH16Q9H6N6 1097 aa21.28■■□□□ 1
USP42-207ENST00000521713 DDRGK1Q96HY6 314 aa21.27■■□□□ 1
USP42-207ENST00000521713 NUDCQ9Y266 331 aa21.27■■□□□ 1
USP42-207ENST00000521713 SETD5Q9C0A6 1442 aa21.27■□□□□ 0.99
USP42-207ENST00000521713 PPM1GO15355 546 aaPredicted RBP21.26■□□□□ 0.99
USP42-207ENST00000521713 KANK4Q5T7N3 995 aaPredicted RBP21.26■□□□□ 0.99
USP42-207ENST00000521713 ANKRD30AQ9BXX3 1397 aa21.26■□□□□ 0.99
USP42-207ENST00000521713 LMOD2Q6P5Q4 547 aa21.24■□□□□ 0.99
USP42-207ENST00000521713 TMF1P82094 1093 aa21.24■□□□□ 0.99
USP42-207ENST00000521713 PKD2Q13563 968 aa21.23■□□□□ 0.99
USP42-207ENST00000521713 NCAPD3P42695 1498 aa21.21■□□□□ 0.99
USP42-207ENST00000521713 OSCARQ8IYS5 282 aa21.2■□□□□ 0.98
USP42-207ENST00000521713 FHOD3Q2V2M9 1422 aa21.19■□□□□ 0.98
USP42-207ENST00000521713 MAPK8IP3Q9UPT6 1336 aa21.19■□□□□ 0.98
USP42-207ENST00000521713 CCDC18Q5T9S5 1454 aa21.19■□□□□ 0.98
USP42-207ENST00000521713 NUP155O75694 1391 aa21.17■□□□□ 0.98
USP42-207ENST00000521713 SPAG9O60271 1321 aaKnown RBP21.16■□□□□ 0.98
USP42-207ENST00000521713 PTPRGP23470 1445 aa21.15■□□□□ 0.98
USP42-207ENST00000521713 KIF3BO15066 747 aa21.14■□□□□ 0.98
USP42-207ENST00000521713 ERICH6BQ5W0A0 696 aa21.14■□□□□ 0.97
USP42-207ENST00000521713 SRPK2P78362 688 aaKnown RBP21.13■□□□□ 0.97
USP42-207ENST00000521713 PNNQ9H307 717 aaKnown RBP21.12■□□□□ 0.97
USP42-207ENST00000521713 HNRNPMP52272 730 aaKnown RBP eCLIP21.1■□□□□ 0.971e-6■■■■□ 21.8
USP42-207ENST00000521713 MPHOSPH9Q99550 1183 aa21.1■□□□□ 0.97
USP42-207ENST00000521713 BECN1Q14457 450 aa21.1■□□□□ 0.97
USP42-207ENST00000521713 GAPVD1Q14C86 1478 aa21.08■□□□□ 0.96
USP42-207ENST00000521713 TNNT2P45379 298 aaPredicted RBP21.06■□□□□ 0.96
USP42-207ENST00000521713 TRIM44Q96DX7 344 aaPredicted RBP21.06■□□□□ 0.96
USP42-207ENST00000521713 FGD5Q6ZNL6 1462 aa21.05■□□□□ 0.96
USP42-207ENST00000521713 CYB5RLQ6IPT4 315 aa21.05■□□□□ 0.96
USP42-207ENST00000521713 WASHC2CQ9Y4E1 1318 aa21.04■□□□□ 0.96
USP42-207ENST00000521713 NEUROD2Q15784 382 aa21.03■□□□□ 0.96
USP42-207ENST00000521713 CC2D1BQ5T0F9 858 aaKnown RBP21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms