RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 RNF25Q96BH1 459 aaPredicted RBP16.47■□□□□ 0.23
LSM1-202ENST00000520286 TAOK2Q9UL54 1235 aa16.47■□□□□ 0.23
LSM1-202ENST00000520286 CLEC11AQ9Y240 323 aa16.45■□□□□ 0.22
LSM1-202ENST00000520286 PRKCSHP14314 528 aaPredicted RBP16.43■□□□□ 0.22
LSM1-202ENST00000520286 PRR29P0C7W0 189 aa16.42■□□□□ 0.22
LSM1-202ENST00000520286 CREBZFQ9NS37 354 aa16.41■□□□□ 0.22
LSM1-202ENST00000520286 DNAJC5Q9H3Z4 198 aa16.38■□□□□ 0.21
LSM1-202ENST00000520286 RIOK3O14730 519 aaKnown RBP16.37■□□□□ 0.21
LSM1-202ENST00000520286 FAM212AQ96EL1 285 aa16.37■□□□□ 0.21
LSM1-202ENST00000520286 MNX1P50219 401 aaPredicted RBP16.34■□□□□ 0.21
LSM1-202ENST00000520286 REM2Q8IYK8 340 aaPredicted RBP16.34■□□□□ 0.21
LSM1-202ENST00000520286 VGFO15240 615 aaPredicted RBP16.26■□□□□ 0.19
LSM1-202ENST00000520286 NKX1-1Q15270 411 aaPredicted RBP16.26■□□□□ 0.19
LSM1-202ENST00000520286 CHRM1P11229 460 aaPredicted RBP16.25■□□□□ 0.19
LSM1-202ENST00000520286 TPRNQ4KMQ1 711 aa16.25■□□□□ 0.19
LSM1-202ENST00000520286 RASEFQ8IZ41 740 aa16.25■□□□□ 0.19
LSM1-202ENST00000520286 STK25O00506 426 aa16.24■□□□□ 0.19
LSM1-202ENST00000520286 GTPBP6O43824 516 aaPredicted RBP16.19■□□□□ 0.18
LSM1-202ENST00000520286 PITPNM1O00562 1244 aa16.15■□□□□ 0.18
LSM1-202ENST00000520286 SGIP1Q9BQI5 828 aa16.14■□□□□ 0.17
LSM1-202ENST00000520286 PYGBP11216 843 aa16.13■□□□□ 0.17
LSM1-202ENST00000520286 NBR1Q14596 966 aa16.13■□□□□ 0.17
LSM1-202ENST00000520286 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.11■□□□□ 0.17
LSM1-202ENST00000520286 ZFP91Q96JP5 570 aaPredicted RBP16.11■□□□□ 0.17
LSM1-202ENST00000520286 STK24Q9Y6E0 443 aa16.11■□□□□ 0.17
LSM1-202ENST00000520286 BCL11BQ9C0K0 894 aaPredicted RBP16.1■□□□□ 0.17
LSM1-202ENST00000520286 RYDENQ9NUL5 291 aaKnown RBP16.04■□□□□ 0.16
LSM1-202ENST00000520286 CHADLQ6NUI6 762 aa15.96■□□□□ 0.15
LSM1-202ENST00000520286 TSPYL2Q9H2G4 693 aaPredicted RBP15.94■□□□□ 0.14
LSM1-202ENST00000520286 ZNF467Q7Z7K2 595 aaPredicted RBP15.91■□□□□ 0.14
LSM1-202ENST00000520286 FARP1Q9Y4F1 1045 aaPredicted RBP15.88■□□□□ 0.13
LSM1-202ENST00000520286 PDAP1Q13442 181 aaKnown RBP15.83■□□□□ 0.12
LSM1-202ENST00000520286 PCDHB8Q9UN66 801 aa15.8■□□□□ 0.12
LSM1-202ENST00000520286 PCDHB13Q9Y5F0 798 aa15.8■□□□□ 0.12
LSM1-202ENST00000520286 PRKAR2AP13861 404 aaKnown RBP15.76■□□□□ 0.11
LSM1-202ENST00000520286 CCDC61Q9Y6R9 512 aa15.76■□□□□ 0.11
LSM1-202ENST00000520286 P3H3Q8IVL6 736 aa15.74■□□□□ 0.11
LSM1-202ENST00000520286 ZNF579Q8NAF0 562 aaKnown RBP15.74■□□□□ 0.11
LSM1-202ENST00000520286 PSEN1P49768 467 aa15.73■□□□□ 0.11
LSM1-202ENST00000520286 CADPS2Q86UW7 1296 aa15.7■□□□□ 0.1
LSM1-202ENST00000520286 WDR70Q9NW82 654 aa15.7■□□□□ 0.1
LSM1-202ENST00000520286 MFRPQ9BY79 579 aa15.67■□□□□ 0.1
LSM1-202ENST00000520286 FXR2P51116 673 aaKnown RBP eCLIP15.66■□□□□ 0.1
LSM1-202ENST00000520286 PAK3O75914 559 aaPredicted RBP15.65■□□□□ 0.1
LSM1-202ENST00000520286 IFNL1Q8IU54 200 aa15.6■□□□□ 0.09
LSM1-202ENST00000520286 KCNV2Q8TDN2 545 aa15.6■□□□□ 0.09
LSM1-202ENST00000520286 MAP3K13O43283 966 aa15.56■□□□□ 0.08
LSM1-202ENST00000520286 EFCAB3Q8N7B9 438 aa15.55■□□□□ 0.08
LSM1-202ENST00000520286 KIF12Q96FN5 646 aa15.55■□□□□ 0.08
LSM1-202ENST00000520286 CABP2Q9NPB3 220 aa15.54■□□□□ 0.08
LSM1-202ENST00000520286 NLRP6P59044 892 aa15.53■□□□□ 0.08
LSM1-202ENST00000520286 PPP1R37O75864 691 aa15.52■□□□□ 0.08
LSM1-202ENST00000520286 SOX12O15370 315 aa15.51■□□□□ 0.07
LSM1-202ENST00000520286 FBXO22Q8NEZ5 403 aa15.51■□□□□ 0.07
LSM1-202ENST00000520286 PIP4P2Q8N4L2 257 aa15.48■□□□□ 0.07
LSM1-202ENST00000520286 PHF8Q9UPP1 1060 aa15.48■□□□□ 0.07
LSM1-202ENST00000520286 CHRDL2Q6WN34 429 aa15.47■□□□□ 0.07
LSM1-202ENST00000520286 LMOD2Q6P5Q4 547 aa15.44■□□□□ 0.06
LSM1-202ENST00000520286 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.44■□□□□ 0.06
LSM1-202ENST00000520286 ZRANB1Q9UGI0 708 aa15.42■□□□□ 0.06
LSM1-202ENST00000520286 ARHGEF1Q92888 912 aaKnown RBP15.41■□□□□ 0.06
LSM1-202ENST00000520286 E2F4Q16254 413 aa15.39■□□□□ 0.05
LSM1-202ENST00000520286 TULP1O00294 542 aaPredicted RBP15.38■□□□□ 0.05
LSM1-202ENST00000520286 CD44P16070 742 aaKnown RBP15.36■□□□□ 0.05
LSM1-202ENST00000520286 PHF12Q96QT6 1004 aa15.34■□□□□ 0.05
LSM1-202ENST00000520286 GOLGA2Q08379 1002 aa15.3■□□□□ 0.04
LSM1-202ENST00000520286 MS4A4AQ96JQ5 239 aa15.3■□□□□ 0.04
LSM1-202ENST00000520286 NCKAP5LQ9HCH0 1330 aa15.3■□□□□ 0.04
LSM1-202ENST00000520286 PDE4AP27815 886 aa15.28■□□□□ 0.04
LSM1-202ENST00000520286 LARP6Q9BRS8 491 aaKnown RBP15.28■□□□□ 0.04
LSM1-202ENST00000520286 TMEM106CQ9BVX2 250 aa15.27■□□□□ 0.04
LSM1-202ENST00000520286 SEMA3EO15041 775 aa15.25■□□□□ 0.03
LSM1-202ENST00000520286 TMEM132AQ24JP5 1023 aa15.25■□□□□ 0.03
LSM1-202ENST00000520286 GTF3C3Q9Y5Q9 886 aa15.25■□□□□ 0.03
LSM1-202ENST00000520286 TESPA1A2RU30 521 aaPredicted RBP15.24■□□□□ 0.03
LSM1-202ENST00000520286 MFSD10Q14728 455 aa15.22■□□□□ 0.03
LSM1-202ENST00000520286 CRISPLD2Q9H0B8 497 aa15.21■□□□□ 0.03
LSM1-202ENST00000520286 MKRN3Q13064 507 aaKnown RBP15.2■□□□□ 0.02
LSM1-202ENST00000520286 ZC3H15Q8WU90 426 aaKnown RBP15.2■□□□□ 0.02
LSM1-202ENST00000520286 DDX27Q96GQ7 796 aaKnown RBP15.2■□□□□ 0.02
LSM1-202ENST00000520286 MS4A3Q96HJ5 214 aa15.19■□□□□ 0.02
LSM1-202ENST00000520286 TRPC6Q9Y210 931 aa15.19■□□□□ 0.02
LSM1-202ENST00000520286 TIMELESSQ9UNS1 1208 aa15.15■□□□□ 0.02
LSM1-202ENST00000520286 ARIH1Q9Y4X5 557 aaPredicted RBP15.14■□□□□ 0.01
LSM1-202ENST00000520286 SMYD5Q6GMV2 418 aa15.13■□□□□ 0.01
LSM1-202ENST00000520286 CAMK2BQ13554 666 aa15.1■□□□□ 0.01
LSM1-202ENST00000520286 C19orf67A6NJJ6 358 aa15.09■□□□□ 0.01
LSM1-202ENST00000520286 BRPF1P55201 1214 aaPredicted RBP15.09■□□□□ 0.01
LSM1-202ENST00000520286 TIE1P35590 1138 aa15.08■□□□□ 0
LSM1-202ENST00000520286 TTLL13PA6NNM8 815 aa15.06■□□□□ 0
LSM1-202ENST00000520286 SLC24A3Q9HC58 644 aa15.06■□□□□ 0
LSM1-202ENST00000520286 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.05■□□□□ -0
LSM1-202ENST00000520286 ILDR1Q86SU0 546 aaPredicted RBP15.04■□□□□ -0
LSM1-202ENST00000520286 ERICH6Q7L0X2 663 aa15.02■□□□□ -0
LSM1-202ENST00000520286 ZMYND10O75800 440 aa15.01□□□□□ -0.01
LSM1-202ENST00000520286 PPP1R15BQ5SWA1 713 aa15.01□□□□□ -0.01
LSM1-202ENST00000520286 NEUROD2Q15784 382 aa15□□□□□ -0.01
LSM1-202ENST00000520286 GPHNQ9NQX3 736 aaPredicted RBP15□□□□□ -0.01
LSM1-202ENST00000520286 BMP2KQ9NSY1 1161 aaPredicted RBP14.99□□□□□ -0.01
LSM1-202ENST00000520286 TRIM35Q9UPQ4 493 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms