RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 WDR43Q15061 677 aaKnown RBP eCLIP17.61■□□□□ 0.417e-6■■■■■ 27.3
TCOF1-214ENST00000515035 PPM1GO15355 546 aaPredicted RBP17.6■□□□□ 0.41
TCOF1-214ENST00000515035 CHGAP10645 457 aaKnown RBP17.6■□□□□ 0.41
TCOF1-214ENST00000515035 RSF1Q96T23 1441 aaPredicted RBP17.59■□□□□ 0.41
TCOF1-214ENST00000515035 HIRIP3Q9BW71 556 aaPredicted RBP17.58■□□□□ 0.4
TCOF1-214ENST00000515035 TSPY4P0CV99 314 aa17.57■□□□□ 0.4
TCOF1-214ENST00000515035 TSPY10P0CW01 314 aa17.57■□□□□ 0.4
TCOF1-214ENST00000515035 NAP1L5Q96NT1 182 aaPredicted RBP17.56■□□□□ 0.4
TCOF1-214ENST00000515035 GOLGA6L22H0YM25 854 aa17.55■□□□□ 0.4
TCOF1-214ENST00000515035 MTUS2Q5JR59 1369 aa17.55■□□□□ 0.4
TCOF1-214ENST00000515035 SUPT16HQ9Y5B9 1047 aaKnown RBP17.52■□□□□ 0.39
TCOF1-214ENST00000515035 PLPPR3Q6T4P5 718 aa17.52■□□□□ 0.39
TCOF1-214ENST00000515035 EEA1Q15075 1411 aa17.51■□□□□ 0.39
TCOF1-214ENST00000515035 ERCC6Q03468 1493 aa17.51■□□□□ 0.39
TCOF1-214ENST00000515035 NCLP19338 710 aaKnown RBP17.51■□□□□ 0.39
TCOF1-214ENST00000515035 LAS1LQ9Y4W2 734 aaKnown RBP17.51■□□□□ 0.39
TCOF1-214ENST00000515035 NOP58Q9Y2X3 529 aaKnown RBP17.5■□□□□ 0.39
TCOF1-214ENST00000515035 PTMAP06454 111 aaKnown RBP17.49■□□□□ 0.39
TCOF1-214ENST00000515035 MYH16Q9H6N6 1097 aa17.48■□□□□ 0.39
TCOF1-214ENST00000515035 WRNQ14191 1432 aaPredicted RBP eCLIP17.48■□□□□ 0.39
TCOF1-214ENST00000515035 DNTTIP2Q5QJE6 756 aaKnown RBP17.47■□□□□ 0.39
TCOF1-214ENST00000515035 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.47■□□□□ 0.392e-8■■■■□ 22.6
TCOF1-214ENST00000515035 BAZ1AQ9NRL2 1556 aaPredicted RBP17.47■□□□□ 0.39
TCOF1-214ENST00000515035 EIF4G2P78344 907 aaKnown RBP eCLIP17.46■□□□□ 0.39
TCOF1-214ENST00000515035 CHIC2Q9UKJ5 165 aa17.46■□□□□ 0.39
TCOF1-214ENST00000515035 CLIP1P30622 1438 aa17.46■□□□□ 0.39
TCOF1-214ENST00000515035 PLEKHD1A6NEE1 506 aa17.45■□□□□ 0.38
TCOF1-214ENST00000515035 KIF27Q86VH2 1401 aa17.43■□□□□ 0.38
TCOF1-214ENST00000515035 PPP4R2Q9NY27 417 aa17.43■□□□□ 0.38
TCOF1-214ENST00000515035 DEKP35659 375 aaKnown RBP17.41■□□□□ 0.38
TCOF1-214ENST00000515035 KDM2AQ9Y2K7 1162 aa17.41■□□□□ 0.38
TCOF1-214ENST00000515035 KCNH8Q96L42 1107 aa17.4■□□□□ 0.38
TCOF1-214ENST00000515035 GOLGA3Q08378 1498 aa17.38■□□□□ 0.37
TCOF1-214ENST00000515035 CDK11BP21127 795 aaKnown RBP17.38■□□□□ 0.37
TCOF1-214ENST00000515035 SENP3-EIF4A1A0A087X0R7 540 aa17.37■□□□□ 0.37
TCOF1-214ENST00000515035 RGS3P49796 1198 aa17.3■□□□□ 0.36
TCOF1-214ENST00000515035 B4GALNT3Q6L9W6 998 aa17.3■□□□□ 0.36
TCOF1-214ENST00000515035 RBM19Q9Y4C8 960 aaKnown RBP17.3■□□□□ 0.36
TCOF1-214ENST00000515035 ZRSR1Q15695 479 aaKnown RBP17.29■□□□□ 0.36
TCOF1-214ENST00000515035 CEP162Q5TB80 1403 aa17.27■□□□□ 0.36
TCOF1-214ENST00000515035 TPRNQ4KMQ1 711 aa17.27■□□□□ 0.36
TCOF1-214ENST00000515035 CECR2Q9BXF3 1484 aa17.26■□□□□ 0.35
TCOF1-214ENST00000515035 PLCB2Q00722 1185 aa17.25■□□□□ 0.35
TCOF1-214ENST00000515035 CEP164Q9UPV0 1460 aa17.25■□□□□ 0.35
TCOF1-214ENST00000515035 CFDP1Q9UEE9 299 aaPredicted RBP17.24■□□□□ 0.35
TCOF1-214ENST00000515035 PPP1R15AO75807 674 aaPredicted RBP17.23■□□□□ 0.35
TCOF1-214ENST00000515035 L1TD1Q5T7N2 865 aaKnown RBP17.22■□□□□ 0.35
TCOF1-214ENST00000515035 CASC1Q6TDU7 716 aa17.22■□□□□ 0.35
TCOF1-214ENST00000515035 RRP7BPQ9NSQ0 103 aa17.22■□□□□ 0.35
TCOF1-214ENST00000515035 FTSJ3Q8IY81 847 aaKnown RBP17.21■□□□□ 0.35
TCOF1-214ENST00000515035 ARID4BQ4LE39 1312 aaPredicted RBP17.21■□□□□ 0.35
TCOF1-214ENST00000515035 PDS5BQ9NTI5 1447 aa17.19■□□□□ 0.34
TCOF1-214ENST00000515035 SMARCA2P51531 1590 aa17.19■□□□□ 0.34
TCOF1-214ENST00000515035 HSP90AB1P08238 724 aaKnown RBP17.18■□□□□ 0.34
TCOF1-214ENST00000515035 MSNP26038 577 aaKnown RBP17.18■□□□□ 0.34
TCOF1-214ENST00000515035 TNIKQ9UKE5 1360 aa17.17■□□□□ 0.34
TCOF1-214ENST00000515035 CHAF1AQ13111 956 aaPredicted RBP17.14■□□□□ 0.34
TCOF1-214ENST00000515035 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.14■□□□□ 0.34
TCOF1-214ENST00000515035 CUX2O14529 1486 aa17.14■□□□□ 0.33
TCOF1-214ENST00000515035 CFAP53Q96M91 514 aa17.14■□□□□ 0.33
TCOF1-214ENST00000515035 AMER1Q5JTC6 1135 aaPredicted RBP17.14■□□□□ 0.33
TCOF1-214ENST00000515035 KNSTRNQ9Y448 316 aa17.14■□□□□ 0.33
TCOF1-214ENST00000515035 CARMIL1Q5VZK9 1371 aa17.13■□□□□ 0.33
TCOF1-214ENST00000515035 FRAT1Q92837 279 aaPredicted RBP17.12■□□□□ 0.33
TCOF1-214ENST00000515035 NEUROD2Q15784 382 aa17.12■□□□□ 0.33
TCOF1-214ENST00000515035 GOLGA6L6A8MZA4 724 aa17.1■□□□□ 0.33
TCOF1-214ENST00000515035 NRDCO43847 1150 aa17.1■□□□□ 0.33
TCOF1-214ENST00000515035 HSCBQ8IWL3 235 aa17.1■□□□□ 0.33
TCOF1-214ENST00000515035 C14orf37Q86TY3 774 aa17.1■□□□□ 0.33
TCOF1-214ENST00000515035 PNNQ9H307 717 aaKnown RBP17.1■□□□□ 0.33
TCOF1-214ENST00000515035 FHAD1B1AJZ9 1412 aa17.08■□□□□ 0.33
TCOF1-214ENST00000515035 TSHZ2Q9NRE2 1034 aa17.08■□□□□ 0.32
TCOF1-214ENST00000515035 RGL3Q3MIN7 710 aa17.07■□□□□ 0.32
TCOF1-214ENST00000515035 CDCA8Q53HL2 280 aa17.07■□□□□ 0.32
TCOF1-214ENST00000515035 CARD11Q9BXL7 1154 aa17.07■□□□□ 0.32
TCOF1-214ENST00000515035 EIF4G1Q04637 1599 aaKnown RBP17.06■□□□□ 0.32
TCOF1-214ENST00000515035 SIN3AQ96ST3 1273 aa17.06■□□□□ 0.32
TCOF1-214ENST00000515035 CCNB3Q8WWL7 1395 aa17.05■□□□□ 0.32
TCOF1-214ENST00000515035 SPRYD3Q8NCJ5 442 aa17.04■□□□□ 0.32
TCOF1-214ENST00000515035 MROH2BQ7Z745 1585 aa17.04■□□□□ 0.32
TCOF1-214ENST00000515035 TRHP20396 242 aaPredicted RBP17.03■□□□□ 0.32
TCOF1-214ENST00000515035 CCER2I3L3R5 266 aa17.03■□□□□ 0.32
TCOF1-214ENST00000515035 CCDC88BA6NC98 1476 aa17.01■□□□□ 0.31
TCOF1-214ENST00000515035 MS4A1P11836 297 aa17.01■□□□□ 0.31
TCOF1-214ENST00000515035 CARMIL2Q6F5E8 1435 aa17.01■□□□□ 0.31
TCOF1-214ENST00000515035 MAPK8IP3Q9UPT6 1336 aa17.01■□□□□ 0.31
TCOF1-214ENST00000515035 CHMP4BQ9H444 224 aaKnown RBP17.01■□□□□ 0.31
TCOF1-214ENST00000515035 GOLGA6L4A6NEF3 574 aa17.01■□□□□ 0.31
TCOF1-214ENST00000515035 ARID3AQ99856 593 aa17■□□□□ 0.31
TCOF1-214ENST00000515035 SOGA1O94964 1423 aa16.99■□□□□ 0.31
TCOF1-214ENST00000515035 GZF1Q9H116 711 aaPredicted RBP16.97■□□□□ 0.31
TCOF1-214ENST00000515035 SENP3Q9H4L4 574 aaPredicted RBP16.97■□□□□ 0.31
TCOF1-214ENST00000515035 FGD1P98174 961 aa16.96■□□□□ 0.31
TCOF1-214ENST00000515035 DRC7Q8IY82 874 aa16.96■□□□□ 0.31
TCOF1-214ENST00000515035 NUDCQ9Y266 331 aa16.96■□□□□ 0.31
TCOF1-214ENST00000515035 CC2D1BQ5T0F9 858 aaKnown RBP16.95■□□□□ 0.3
TCOF1-214ENST00000515035 SLKQ9H2G2 1235 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-214ENST00000515035 ZBTB7CA1YPR0 619 aa16.95■□□□□ 0.3
TCOF1-214ENST00000515035 CADPSQ9ULU8 1353 aa16.94■□□□□ 0.3
TCOF1-214ENST00000515035 KIAA2012Q0VF49 1180 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms