RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	TSPYL2	Q9H2G4	693 aa	Predicted RBP	12.78	□□□□□ -0.36
MATR3-223	ENST00000514402	CCDC61	Q9Y6R9	512 aa		12.77	□□□□□ -0.37
MATR3-223	ENST00000514402	GSE1	Q14687	1217 aa		12.76	□□□□□ -0.37
MATR3-223	ENST00000514402	DCAF8	Q5TAQ9	597 aa		12.72	□□□□□ -0.37
MATR3-223	ENST00000514402	GABBR2	O75899	941 aa		12.69	□□□□□ -0.38
MATR3-223	ENST00000514402	PHF12	Q96QT6	1004 aa		12.67	□□□□□ -0.38
MATR3-223	ENST00000514402	SGIP1	Q9BQI5	828 aa		12.65	□□□□□ -0.38
MATR3-223	ENST00000514402	KIF12	Q96FN5	646 aa		12.64	□□□□□ -0.39
MATR3-223	ENST00000514402	TRIM41	Q8WV44	630 aa		12.63	□□□□□ -0.39
MATR3-223	ENST00000514402	CHRM1	P11229	460 aa	Predicted RBP	12.61	□□□□□ -0.39
MATR3-223	ENST00000514402	CIZ1	Q9ULV3	898 aa	Predicted RBP	12.61	□□□□□ -0.39
MATR3-223	ENST00000514402	MAP3K13	O43283	966 aa		12.57	□□□□□ -0.4
MATR3-223	ENST00000514402	GALR2	O43603	387 aa	Predicted RBP	12.56	□□□□□ -0.4
MATR3-223	ENST00000514402	PYGB	P11216	843 aa		12.55	□□□□□ -0.4
MATR3-223	ENST00000514402	MS4A3	Q96HJ5	214 aa		12.55	□□□□□ -0.4
MATR3-223	ENST00000514402	PCDHB13	Q9Y5F0	798 aa		12.54	□□□□□ -0.4
MATR3-223	ENST00000514402	ZNF467	Q7Z7K2	595 aa	Predicted RBP	12.5	□□□□□ -0.41
MATR3-223	ENST00000514402	DCBLD2	Q96PD2	775 aa		12.49	□□□□□ -0.41
MATR3-223	ENST00000514402	IFNL1	Q8IU54	200 aa		12.46	□□□□□ -0.41
MATR3-223	ENST00000514402	TIE1	P35590	1138 aa		12.45	□□□□□ -0.42
MATR3-223	ENST00000514402	PKD2	Q13563	968 aa		12.42	□□□□□ -0.42
MATR3-223	ENST00000514402	ASTL	Q6HA08	431 aa	Predicted RBP	12.41	□□□□□ -0.42
MATR3-223	ENST00000514402	ECM2	O94769	699 aa	Predicted RBP	12.39	□□□□□ -0.43
MATR3-223	ENST00000514402	POTEI	P0CG38	1075 aa		12.38	□□□□□ -0.43
MATR3-223	ENST00000514402	PCDHB8	Q9UN66	801 aa		12.38	□□□□□ -0.43
MATR3-223	ENST00000514402	ATMIN	O43313	823 aa	Predicted RBP	12.36	□□□□□ -0.43
MATR3-223	ENST00000514402	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.36	□□□□□ -0.43
MATR3-223	ENST00000514402	TAOK2	Q9UL54	1235 aa		12.35	□□□□□ -0.43
MATR3-223	ENST00000514402	TRPC6	Q9Y210	931 aa		12.35	□□□□□ -0.43
MATR3-223	ENST00000514402	RIOK3	O14730	519 aa	Known RBP	12.34	□□□□□ -0.43
MATR3-223	ENST00000514402	PDAP1	Q13442	181 aa	Known RBP	12.34	□□□□□ -0.43
MATR3-223	ENST00000514402	TTLL13P	A6NNM8	815 aa		12.33	□□□□□ -0.44
MATR3-223	ENST00000514402	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.31	□□□□□ -0.44
MATR3-223	ENST00000514402	RNF25	Q96BH1	459 aa	Predicted RBP	12.31	□□□□□ -0.44
MATR3-223	ENST00000514402	TMEM106C	Q9BVX2	250 aa		12.31	□□□□□ -0.44
MATR3-223	ENST00000514402	VGF	O15240	615 aa	Predicted RBP	12.3	□□□□□ -0.44
MATR3-223	ENST00000514402	PSEN1	P49768	467 aa		12.3	□□□□□ -0.44
MATR3-223	ENST00000514402	ATN1	P54259	1190 aa	Predicted RBP	12.3	□□□□□ -0.44
MATR3-223	ENST00000514402	SLC39A7	Q92504	469 aa		12.28	□□□□□ -0.44
MATR3-223	ENST00000514402	LHX8	Q68G74	356 aa		12.27	□□□□□ -0.45
MATR3-223	ENST00000514402	C7	P10643	843 aa		12.25	□□□□□ -0.45
MATR3-223	ENST00000514402	IER5L	Q5T953	404 aa		12.25	□□□□□ -0.45
MATR3-223	ENST00000514402	TRIM35	Q9UPQ4	493 aa		12.25	□□□□□ -0.45
MATR3-223	ENST00000514402	RGL2	O15211	777 aa		12.24	□□□□□ -0.45
MATR3-223	ENST00000514402	PELP1	Q8IZL8	1130 aa	Known RBP	12.24	□□□□□ -0.45
MATR3-223	ENST00000514402	GOLGA2	Q08379	1002 aa		12.19	□□□□□ -0.46
MATR3-223	ENST00000514402	METRN	Q9UJH8	293 aa		12.19	□□□□□ -0.46
MATR3-223	ENST00000514402	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	12.18	□□□□□ -0.46
MATR3-223	ENST00000514402	ZFP91	Q96JP5	570 aa	Predicted RBP	12.18	□□□□□ -0.46
MATR3-223	ENST00000514402	MKRN3	Q13064	507 aa	Known RBP	12.15	□□□□□ -0.46
MATR3-223	ENST00000514402	CABP2	Q9NPB3	220 aa		12.13	□□□□□ -0.47
MATR3-223	ENST00000514402	RTN4	Q9NQC3	1192 aa	Known RBP	12.13	□□□□□ -0.47
MATR3-223	ENST00000514402	STK25	O00506	426 aa		12.1	□□□□□ -0.47
MATR3-223	ENST00000514402	SEC24B	O95487	1268 aa		12.1	□□□□□ -0.47
MATR3-223	ENST00000514402	IRX5	P78411	483 aa	Predicted RBP	12.1	□□□□□ -0.47
MATR3-223	ENST00000514402	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.1	□□□□□ -0.47
MATR3-223	ENST00000514402	PLCG2	P16885	1265 aa		12.07	□□□□□ -0.48
MATR3-223	ENST00000514402	HS6ST3	Q8IZP7	471 aa		12.07	□□□□□ -0.48
MATR3-223	ENST00000514402	OCEL1	Q9H607	264 aa		12.07	□□□□□ -0.48
MATR3-223	ENST00000514402	STK24	Q9Y6E0	443 aa		12.07	□□□□□ -0.48
MATR3-223	ENST00000514402	SOX12	O15370	315 aa		12.06	□□□□□ -0.48
MATR3-223	ENST00000514402	ILDR1	Q86SU0	546 aa	Predicted RBP	12.06	□□□□□ -0.48
MATR3-223	ENST00000514402	POTEF	A5A3E0	1075 aa		12.05	□□□□□ -0.48
MATR3-223	ENST00000514402	EFCAB3	Q8N7B9	438 aa		12.04	□□□□□ -0.48
MATR3-223	ENST00000514402	COLQ	Q9Y215	455 aa	Predicted RBP	12.04	□□□□□ -0.48
MATR3-223	ENST00000514402	DNAJC5	Q9H3Z4	198 aa		12.02	□□□□□ -0.49
MATR3-223	ENST00000514402	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	12.02	□□□□□ -0.49
MATR3-223	ENST00000514402	CHGA	P10645	457 aa	Known RBP	11.99	□□□□□ -0.49
MATR3-223	ENST00000514402	PDCD7	Q8N8D1	485 aa	Known RBP	11.99	□□□□□ -0.49
MATR3-223	ENST00000514402	PLSCR2	Q9NRY7	297 aa		11.99	□□□□□ -0.49
MATR3-223	ENST00000514402	POTEB2	H3BUK9	544 aa		11.97	□□□□□ -0.49
MATR3-223	ENST00000514402	DCAF8L2	P0C7V8	631 aa		11.97	□□□□□ -0.49
MATR3-223	ENST00000514402	MAMSTR	Q6ZN01	415 aa		11.97	□□□□□ -0.49
MATR3-223	ENST00000514402	NLRP6	P59044	892 aa		11.95	□□□□□ -0.5
MATR3-223	ENST00000514402	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.94	□□□□□ -0.5
MATR3-223	ENST00000514402	MFRP	Q9BY79	579 aa		11.91	□□□□□ -0.5
MATR3-223	ENST00000514402	SCUBE2	Q9NQ36	999 aa		11.91	□□□□□ -0.5
MATR3-223	ENST00000514402	PHF8	Q9UPP1	1060 aa		11.91	□□□□□ -0.5
MATR3-223	ENST00000514402	FBXO22	Q8NEZ5	403 aa		11.9	□□□□□ -0.5
MATR3-223	ENST00000514402	RYDEN	Q9NUL5	291 aa	Known RBP	11.9	□□□□□ -0.5
MATR3-223	ENST00000514402	POTEJ	P0CG39	1038 aa		11.89	□□□□□ -0.51
MATR3-223	ENST00000514402	MS4A4A	Q96JQ5	239 aa		11.87	□□□□□ -0.51
MATR3-223	ENST00000514402		G3V3G9	751 aa		11.86	□□□□□ -0.51
MATR3-223	ENST00000514402	OTUD5	Q96G74	571 aa		11.85	□□□□□ -0.51
MATR3-223	ENST00000514402	BOLA1	Q9Y3E2	137 aa		11.85	□□□□□ -0.51
MATR3-223	ENST00000514402	DPY19L2	Q6NUT2	758 aa		11.84	□□□□□ -0.51
MATR3-223	ENST00000514402	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.82	□□□□□ -0.52
MATR3-223	ENST00000514402	NKX1-1	Q15270	411 aa	Predicted RBP	11.81	□□□□□ -0.52
MATR3-223	ENST00000514402	BBX	Q8WY36	941 aa	Predicted RBP	11.81	□□□□□ -0.52
MATR3-223	ENST00000514402	C3orf67	Q6ZVT6	689 aa		11.8	□□□□□ -0.52
MATR3-223	ENST00000514402	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.8	□□□□□ -0.52
MATR3-223	ENST00000514402	MICALL2	Q8IY33	904 aa		11.77	□□□□□ -0.53
MATR3-223	ENST00000514402	GTPBP6	O43824	516 aa	Predicted RBP	11.72	□□□□□ -0.53
MATR3-223	ENST00000514402	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.72	□□□□□ -0.53
MATR3-223	ENST00000514402	SLAIN1	Q8ND83	568 aa		11.71	□□□□□ -0.53
MATR3-223	ENST00000514402	PPP1R37	O75864	691 aa		11.68	□□□□□ -0.54
MATR3-223	ENST00000514402	SPRYD3	Q8NCJ5	442 aa		11.63	□□□□□ -0.55
MATR3-223	ENST00000514402	SNPH	O15079	494 aa		11.62	□□□□□ -0.55
MATR3-223	ENST00000514402	TMEM92	Q6UXU6	159 aa		11.58	□□□□□ -0.56
MATR3-223	ENST00000514402	KIF3C	O14782	793 aa		11.57	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms