RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 KIAA0586Q9BVV6 1533 aa16.55■□□□□ 0.24
RNF4-221ENST00000513643 ERCC6L2Q5T890 1561 aa16.53■□□□□ 0.24
RNF4-221ENST00000513643 PRG4Q92954 1404 aaPredicted RBP16.5■□□□□ 0.23
RNF4-221ENST00000513643 RAPGEF2Q9Y4G8 1499 aa16.48■□□□□ 0.23
RNF4-221ENST00000513643 PRXQ9BXM0 1461 aa16.48■□□□□ 0.23
RNF4-221ENST00000513643 CHIC1Q5VXU3 224 aa16.45■□□□□ 0.22
RNF4-221ENST00000513643 CSRNP3Q8WYN3 585 aa16.41■□□□□ 0.22
RNF4-221ENST00000513643 EEA1Q15075 1411 aa16.39■□□□□ 0.21
RNF4-221ENST00000513643 IQGAP2Q13576 1575 aa16.36■□□□□ 0.21
RNF4-221ENST00000513643 UGGT2Q9NYU1 1516 aa16.35■□□□□ 0.21
RNF4-221ENST00000513643 DISP1Q96F81 1524 aa16.34■□□□□ 0.21
RNF4-221ENST00000513643 CARMIL2Q6F5E8 1435 aa16.31■□□□□ 0.2
RNF4-221ENST00000513643 TNIKQ9UKE5 1360 aa16.3■□□□□ 0.2
RNF4-221ENST00000513643 PTPRGP23470 1445 aa16.29■□□□□ 0.2
RNF4-221ENST00000513643 ADCY10Q96PN6 1610 aa16.23■□□□□ 0.19
RNF4-221ENST00000513643 TRHP20396 242 aaPredicted RBP16.22■□□□□ 0.19
RNF4-221ENST00000513643 KIAA0556O60303 1618 aa16.22■□□□□ 0.19
RNF4-221ENST00000513643 UHRF1BP1LA0JNW5 1464 aa16.22■□□□□ 0.19
RNF4-221ENST00000513643 CTTNBP2Q8WZ74 1663 aa16.21■□□□□ 0.19
RNF4-221ENST00000513643 FAM9AQ8IZU1 332 aaPredicted RBP16.21■□□□□ 0.19
RNF4-221ENST00000513643 UACAQ9BZF9 1416 aa16.19■□□□□ 0.18
RNF4-221ENST00000513643 GOLGA3Q08378 1498 aa16.19■□□□□ 0.18
RNF4-221ENST00000513643 KIF21BO75037 1637 aa16.19■□□□□ 0.18
RNF4-221ENST00000513643 MAPKBP1O60336 1514 aa16.19■□□□□ 0.18
RNF4-221ENST00000513643 ABCC2Q92887 1545 aa16.16■□□□□ 0.18
RNF4-221ENST00000513643 NPM1P06748 294 aaKnown RBP eCLIP16.16■□□□□ 0.18
RNF4-221ENST00000513643 KDM5BQ9UGL1 1544 aa16.14■□□□□ 0.17
RNF4-221ENST00000513643 ABCC10Q5T3U5 1492 aa16.13■□□□□ 0.17
RNF4-221ENST00000513643 SAMD9Q5K651 1589 aa16.12■□□□□ 0.17
RNF4-221ENST00000513643 TTBK1Q5TCY1 1321 aaPredicted RBP16.11■□□□□ 0.17
RNF4-221ENST00000513643 PLB1Q6P1J6 1458 aa16.1■□□□□ 0.17
RNF4-221ENST00000513643 ABCA8O94911 1581 aa16.09■□□□□ 0.17
RNF4-221ENST00000513643 ASXL2Q76L83 1435 aa16.06■□□□□ 0.16
RNF4-221ENST00000513643 FAM69CQ0P6D2 419 aa16.06■□□□□ 0.16
RNF4-221ENST00000513643 KIF13AQ9H1H9 1805 aa16.05■□□□□ 0.16
RNF4-221ENST00000513643 P3H3Q8IVL6 736 aa16.05■□□□□ 0.16
RNF4-221ENST00000513643 DIP2BQ9P265 1576 aa16.04■□□□□ 0.16
RNF4-221ENST00000513643 UBTFP17480 764 aaKnown RBP16.01■□□□□ 0.15
RNF4-221ENST00000513643 EFCAB5A4FU69 1503 aa16■□□□□ 0.15
RNF4-221ENST00000513643 GLI2P10070 1586 aa16■□□□□ 0.15
RNF4-221ENST00000513643 ZCCHC11Q5TAX3 1644 aaKnown RBP15.99■□□□□ 0.15
RNF4-221ENST00000513643 FHOD3Q2V2M9 1422 aa15.99■□□□□ 0.15
RNF4-221ENST00000513643 ATP10BO94823 1461 aa15.98■□□□□ 0.15
RNF4-221ENST00000513643 EPRSP07814 1512 aaKnown RBP15.98■□□□□ 0.15
RNF4-221ENST00000513643 ARHGAP35Q9NRY4 1499 aa15.96■□□□□ 0.14
RNF4-221ENST00000513643 WDR7Q9Y4E6 1490 aa15.96■□□□□ 0.14
RNF4-221ENST00000513643 RANGAP1P46060 587 aaPredicted RBP15.95■□□□□ 0.14
RNF4-221ENST00000513643 EHMT2Q96KQ7 1210 aa15.94■□□□□ 0.14
RNF4-221ENST00000513643 NUP153P49790 1475 aaKnown RBP15.94■□□□□ 0.14
RNF4-221ENST00000513643 RAPGEF6Q8TEU7 1601 aa15.92■□□□□ 0.14
RNF4-221ENST00000513643 MAP3K4Q9Y6R4 1608 aa15.87■□□□□ 0.13
RNF4-221ENST00000513643 FMN1Q68DA7 1419 aa15.87■□□□□ 0.13
RNF4-221ENST00000513643 PPRC1Q5VV67 1664 aaKnown RBP15.87■□□□□ 0.13
RNF4-221ENST00000513643 ARID3CA6NKF2 412 aa15.85■□□□□ 0.13
RNF4-221ENST00000513643 KCNH8Q96L42 1107 aa15.84■□□□□ 0.13
RNF4-221ENST00000513643 MAGI3Q5TCQ9 1506 aa15.84■□□□□ 0.13
RNF4-221ENST00000513643 CD109Q6YHK3 1445 aa15.83■□□□□ 0.12
RNF4-221ENST00000513643 COL17A1Q9UMD9 1497 aaPredicted RBP15.81■□□□□ 0.12
RNF4-221ENST00000513643 CLIP1P30622 1438 aa15.8■□□□□ 0.12
RNF4-221ENST00000513643 PLEKHD1A6NEE1 506 aa15.8■□□□□ 0.12
RNF4-221ENST00000513643 TSPOAP1O95153 1857 aa15.8■□□□□ 0.12
RNF4-221ENST00000513643 TEX14Q8IWB6 1497 aa15.78■□□□□ 0.12
RNF4-221ENST00000513643 CFAP43Q8NDM7 1665 aa15.78■□□□□ 0.12
RNF4-221ENST00000513643 CASKIN1Q8WXD9 1431 aa15.77■□□□□ 0.12
RNF4-221ENST00000513643 ABCA9Q8IUA7 1624 aa15.77■□□□□ 0.12
RNF4-221ENST00000513643 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.76■□□□□ 0.11
RNF4-221ENST00000513643 HNRNPUL2Q1KMD3 747 aaKnown RBP15.76■□□□□ 0.11
RNF4-221ENST00000513643 CDK13Q14004 1512 aaKnown RBP15.76■□□□□ 0.11
RNF4-221ENST00000513643 KDM6BO15054 1643 aa15.75■□□□□ 0.11
RNF4-221ENST00000513643 LOC105371045A0A1W2PR82 267 aa15.74■□□□□ 0.11
RNF4-221ENST00000513643 HECW1Q76N89 1606 aa15.74■□□□□ 0.11
RNF4-221ENST00000513643 PHLDB1Q86UU1 1377 aa15.73■□□□□ 0.11
RNF4-221ENST00000513643 CEP162Q5TB80 1403 aa15.71■□□□□ 0.11
RNF4-221ENST00000513643 ARAP3Q8WWN8 1544 aa15.71■□□□□ 0.11
RNF4-221ENST00000513643 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.7■□□□□ 0.1
RNF4-221ENST00000513643 CDK11AQ9UQ88 783 aaPredicted RBP15.7■□□□□ 0.1
RNF4-221ENST00000513643 FYCO1Q9BQS8 1478 aa15.69■□□□□ 0.1
RNF4-221ENST00000513643 TROQ12816 1431 aaPredicted RBP15.68■□□□□ 0.1
RNF4-221ENST00000513643 PCF11O94913 1555 aaKnown RBP15.68■□□□□ 0.1
RNF4-221ENST00000513643 NEO1Q92859 1461 aa15.68■□□□□ 0.1
RNF4-221ENST00000513643 ATP1B4Q9UN42 357 aaPredicted RBP15.68■□□□□ 0.1
RNF4-221ENST00000513643 CCDC18Q5T9S5 1454 aa15.67■□□□□ 0.1
RNF4-221ENST00000513643 LRRIQ1Q96JM4 1722 aa15.67■□□□□ 0.1
RNF4-221ENST00000513643 PLCH2O75038 1416 aa15.65■□□□□ 0.1
RNF4-221ENST00000513643 TTC37Q6PGP7 1564 aa15.64■□□□□ 0.09
RNF4-221ENST00000513643 AKNAQ7Z591 1439 aa15.6■□□□□ 0.09
RNF4-221ENST00000513643 FANCAO15360 1455 aa15.59■□□□□ 0.09
RNF4-221ENST00000513643 RAPGEF3O95398 923 aa15.59■□□□□ 0.09
RNF4-221ENST00000513643 KIF14Q15058 1648 aa15.58■□□□□ 0.09
RNF4-221ENST00000513643 KDM4FA0A1W2PPD8 638 aa15.57■□□□□ 0.08
RNF4-221ENST00000513643 EFCAB2Q5VUJ9 269 aa15.56■□□□□ 0.08
RNF4-221ENST00000513643 FRMPD1Q5SYB0 1578 aa15.55■□□□□ 0.08
RNF4-221ENST00000513643 DENND4BO75064 1496 aaPredicted RBP15.54■□□□□ 0.08
RNF4-221ENST00000513643 VPS8Q8N3P4 1428 aa15.54■□□□□ 0.08
RNF4-221ENST00000513643 CFAP74Q9C0B2 1584 aa15.52■□□□□ 0.07
RNF4-221ENST00000513643 SCAPERQ9BY12 1400 aa15.51■□□□□ 0.07
RNF4-221ENST00000513643 GPATCH8Q9UKJ3 1502 aaKnown RBP15.51■□□□□ 0.07
RNF4-221ENST00000513643 ADGRL1O94910 1474 aa15.5■□□□□ 0.07
RNF4-221ENST00000513643 RICTORQ6R327 1708 aa15.49■□□□□ 0.07
RNF4-221ENST00000513643 MYO5CQ9NQX4 1742 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 377.8 ms