RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 SPDYE6P0CI01 402 aa11□□□□□ -0.65
BRCA1-224ENST00000497488 SPDYE2Q495Y8 402 aa11□□□□□ -0.65
BRCA1-224ENST00000497488 STAG3Q9UJ98 1225 aa10.98□□□□□ -0.65
BRCA1-224ENST00000497488 PLCD3Q8N3E9 789 aa10.97□□□□□ -0.65
BRCA1-224ENST00000497488 CIZ1Q9ULV3 898 aaPredicted RBP10.96□□□□□ -0.65
BRCA1-224ENST00000497488 AKT1S1Q96B36 256 aa10.95□□□□□ -0.66
BRCA1-224ENST00000497488 SSUH2Q9Y2M2 353 aa10.95□□□□□ -0.66
BRCA1-224ENST00000497488 ZNF692Q9BU19 519 aaPredicted RBP10.94□□□□□ -0.66
BRCA1-224ENST00000497488 BRPF1P55201 1214 aaPredicted RBP10.92□□□□□ -0.66
BRCA1-224ENST00000497488 NKX1-1Q15270 411 aaPredicted RBP10.91□□□□□ -0.66
BRCA1-224ENST00000497488 TRIM41Q8WV44 630 aa10.91□□□□□ -0.66
BRCA1-224ENST00000497488 GTPBP6O43824 516 aaPredicted RBP10.9□□□□□ -0.66
BRCA1-224ENST00000497488 REM2Q8IYK8 340 aaPredicted RBP10.88□□□□□ -0.67
BRCA1-224ENST00000497488 MIER1Q8N108 512 aa10.86□□□□□ -0.67
BRCA1-224ENST00000497488 LMOD2Q6P5Q4 547 aa10.85□□□□□ -0.67
BRCA1-224ENST00000497488 UBTFP17480 764 aaKnown RBP10.84□□□□□ -0.67
BRCA1-224ENST00000497488 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.83□□□□□ -0.68
BRCA1-224ENST00000497488 P3H3Q8IVL6 736 aa10.83□□□□□ -0.68
BRCA1-224ENST00000497488 PABPN1Q86U42 306 aaKnown RBP eCLIP10.82□□□□□ -0.68
BRCA1-224ENST00000497488 RNF25Q96BH1 459 aaPredicted RBP10.82□□□□□ -0.68
BRCA1-224ENST00000497488 TRIM26Q12899 539 aaPredicted RBP10.8□□□□□ -0.68
BRCA1-224ENST00000497488 NPM2Q86SE8 214 aaKnown RBP10.78□□□□□ -0.68
BRCA1-224ENST00000497488 PITPNM1O00562 1244 aa10.77□□□□□ -0.69
BRCA1-224ENST00000497488 ZBTB47Q9UFB7 747 aaPredicted RBP10.76□□□□□ -0.69
BRCA1-224ENST00000497488 NEUROD2Q15784 382 aa10.75□□□□□ -0.69
BRCA1-224ENST00000497488 CHRDL2Q6WN34 429 aa10.73□□□□□ -0.69
BRCA1-224ENST00000497488 RIOK3O14730 519 aaKnown RBP10.7□□□□□ -0.7
BRCA1-224ENST00000497488 SPDYE1Q8NFV5 336 aaPredicted RBP10.7□□□□□ -0.7
BRCA1-224ENST00000497488 HRCP23327 699 aa10.69□□□□□ -0.7
BRCA1-224ENST00000497488 PLEKHG5O94827 1062 aa10.68□□□□□ -0.7
BRCA1-224ENST00000497488 KCNV2Q8TDN2 545 aa10.68□□□□□ -0.7
BRCA1-224ENST00000497488 CLEC11AQ9Y240 323 aa10.68□□□□□ -0.7
BRCA1-224ENST00000497488 STK25O00506 426 aa10.66□□□□□ -0.7
BRCA1-224ENST00000497488 GSE1Q14687 1217 aa10.66□□□□□ -0.7
BRCA1-224ENST00000497488 ZC3H15Q8WU90 426 aaKnown RBP10.66□□□□□ -0.7
BRCA1-224ENST00000497488 RYDENQ9NUL5 291 aaKnown RBP10.65□□□□□ -0.7
BRCA1-224ENST00000497488 ZMYND15Q9H091 742 aa10.62□□□□□ -0.71
BRCA1-224ENST00000497488 SLC24A3Q9HC58 644 aa10.62□□□□□ -0.71
BRCA1-224ENST00000497488 RSPH6AQ9H0K4 717 aa10.61□□□□□ -0.71
BRCA1-224ENST00000497488 VGFO15240 615 aaPredicted RBP10.6□□□□□ -0.71
BRCA1-224ENST00000497488 FXR2P51116 673 aaKnown RBP eCLIP10.59□□□□□ -0.71
BRCA1-224ENST00000497488 PIP4P2Q8N4L2 257 aa10.59□□□□□ -0.71
BRCA1-224ENST00000497488 WDR70Q9NW82 654 aa10.59□□□□□ -0.71
BRCA1-224ENST00000497488 PRR29P0C7W0 189 aa10.55□□□□□ -0.72
BRCA1-224ENST00000497488 POTEHQ6S545 545 aa10.55□□□□□ -0.72
BRCA1-224ENST00000497488 SGIP1Q9BQI5 828 aa10.53□□□□□ -0.72
BRCA1-224ENST00000497488 STK24Q9Y6E0 443 aa10.52□□□□□ -0.73
BRCA1-224ENST00000497488 CADPS2Q86UW7 1296 aa10.51□□□□□ -0.73
BRCA1-224ENST00000497488 BCL11BQ9C0K0 894 aaPredicted RBP10.51□□□□□ -0.73
BRCA1-224ENST00000497488 NUBP1P53384 320 aa10.5□□□□□ -0.73
BRCA1-224ENST00000497488 PRKAR2AP13861 404 aaKnown RBP10.48□□□□□ -0.73
BRCA1-224ENST00000497488 DCAF8Q5TAQ9 597 aa10.48□□□□□ -0.73
BRCA1-224ENST00000497488 CHADLQ6NUI6 762 aa10.48□□□□□ -0.73
BRCA1-224ENST00000497488 ARID3AQ99856 593 aa10.48□□□□□ -0.73
BRCA1-224ENST00000497488 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.47□□□□□ -0.73
BRCA1-224ENST00000497488 ZMYND10O75800 440 aa10.47□□□□□ -0.73
BRCA1-224ENST00000497488 ARHGEF1Q92888 912 aaKnown RBP10.47□□□□□ -0.73
BRCA1-224ENST00000497488 ZFP91Q96JP5 570 aaPredicted RBP10.47□□□□□ -0.73
BRCA1-224ENST00000497488 TESPA1A2RU30 521 aaPredicted RBP10.45□□□□□ -0.74
BRCA1-224ENST00000497488 C1orf115Q9H7X2 142 aa10.45□□□□□ -0.74
BRCA1-224ENST00000497488 CREBZFQ9NS37 354 aa10.45□□□□□ -0.74
BRCA1-224ENST00000497488 CCDC9Q9Y3X0 531 aaKnown RBP10.43□□□□□ -0.74
BRCA1-224ENST00000497488 CHRM1P11229 460 aaPredicted RBP10.42□□□□□ -0.74
BRCA1-224ENST00000497488 SEMA3EO15041 775 aa10.4□□□□□ -0.74
BRCA1-224ENST00000497488 ZBTB7CA1YPR0 619 aa10.39□□□□□ -0.75
BRCA1-224ENST00000497488 BARGINQ6ZT62 677 aa10.37□□□□□ -0.75
BRCA1-224ENST00000497488 GPBP1L1Q9HC44 474 aaPredicted RBP10.37□□□□□ -0.75
BRCA1-224ENST00000497488 PDIA4P13667 645 aaKnown RBP10.36□□□□□ -0.75
BRCA1-224ENST00000497488 IL27Q8NEV9 243 aa10.36□□□□□ -0.75
BRCA1-224ENST00000497488 FAM212AQ96EL1 285 aa10.36□□□□□ -0.75
BRCA1-224ENST00000497488 MNX1P50219 401 aaPredicted RBP10.35□□□□□ -0.75
BRCA1-224ENST00000497488 FARP1Q9Y4F1 1045 aaPredicted RBP10.34□□□□□ -0.75
BRCA1-224ENST00000497488 E2F4Q16254 413 aa10.33□□□□□ -0.76
BRCA1-224ENST00000497488 AK7Q96M32 723 aa10.33□□□□□ -0.76
BRCA1-224ENST00000497488 ARID3CA6NKF2 412 aa10.3□□□□□ -0.76
BRCA1-224ENST00000497488 APBB1O00213 710 aa10.3□□□□□ -0.76
BRCA1-224ENST00000497488 SMYD5Q6GMV2 418 aa10.3□□□□□ -0.76
BRCA1-224ENST00000497488 KDM4CQ9H3R0 1056 aa10.3□□□□□ -0.76
BRCA1-224ENST00000497488 NECTIN2Q92692 538 aa10.29□□□□□ -0.76
BRCA1-224ENST00000497488 MKRN3Q13064 507 aaKnown RBP10.28□□□□□ -0.76
BRCA1-224ENST00000497488 EVX2Q03828 476 aa10.25□□□□□ -0.77
BRCA1-224ENST00000497488 C19orf67A6NJJ6 358 aa10.24□□□□□ -0.77
BRCA1-224ENST00000497488 HAX1O00165 279 aa10.24□□□□□ -0.77
BRCA1-224ENST00000497488 PYGBP11216 843 aa10.2□□□□□ -0.78
BRCA1-224ENST00000497488 RASEFQ8IZ41 740 aa10.2□□□□□ -0.78
BRCA1-224ENST00000497488 PDE4DQ08499 809 aa10.19□□□□□ -0.78
BRCA1-224ENST00000497488 FLIIQ13045 1269 aa10.19□□□□□ -0.78
BRCA1-224ENST00000497488 KRI1Q8N9T8 703 aaKnown RBP10.19□□□□□ -0.78
BRCA1-224ENST00000497488 TRIM66O15016 1216 aa10.18□□□□□ -0.78
BRCA1-224ENST00000497488 CD44P16070 742 aaKnown RBP10.16□□□□□ -0.78
BRCA1-224ENST00000497488 CCDC82Q8N4S0 544 aa10.16□□□□□ -0.78
BRCA1-224ENST00000497488 MFRPQ9BY79 579 aa10.16□□□□□ -0.78
BRCA1-224ENST00000497488 GPIHBP1Q8IV16 184 aa10.14□□□□□ -0.79
BRCA1-224ENST00000497488 KCTD17Q8N5Z5 321 aa10.13□□□□□ -0.79
BRCA1-224ENST00000497488 ARIH1Q9Y4X5 557 aaPredicted RBP10.13□□□□□ -0.79
BRCA1-224ENST00000497488 ZNF316A6NFI3 1004 aaPredicted RBP10.12□□□□□ -0.79
BRCA1-224ENST00000497488 FAM117AQ9C073 453 aa10.12□□□□□ -0.79
BRCA1-224ENST00000497488 A6NJR5 290 aa10.11□□□□□ -0.79
BRCA1-224ENST00000497488 RBM26Q5T8P6 1007 aaKnown RBP10.11□□□□□ -0.79
BRCA1-224ENST00000497488 PPP1R37O75864 691 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms