RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 PAK3O75914 559 aaPredicted RBP11.46□□□□□ -0.57
SMC4-225ENST00000497203 FAM163AQ96GL9 167 aaPredicted RBP11.46□□□□□ -0.57
SMC4-225ENST00000497203 MNX1P50219 401 aaPredicted RBP11.45□□□□□ -0.58
SMC4-225ENST00000497203 PHF12Q96QT6 1004 aa11.45□□□□□ -0.58
SMC4-225ENST00000497203 NPM1P06748 294 aaKnown RBP eCLIP11.4□□□□□ -0.58
SMC4-225ENST00000497203 VASPP50552 380 aaPredicted RBP11.4□□□□□ -0.58
SMC4-225ENST00000497203 MIER1Q8N108 512 aa11.37□□□□□ -0.59
SMC4-225ENST00000497203 MAMSTRQ6ZN01 415 aa11.35□□□□□ -0.59
SMC4-225ENST00000497203 PLCD3Q8N3E9 789 aa11.34□□□□□ -0.59
SMC4-225ENST00000497203 METRNQ9UJH8 293 aa11.33□□□□□ -0.6
SMC4-225ENST00000497203 ASTLQ6HA08 431 aaPredicted RBP11.32□□□□□ -0.6
SMC4-225ENST00000497203 CDAN1Q8IWY9 1227 aa11.32□□□□□ -0.6
SMC4-225ENST00000497203 MS4A3Q96HJ5 214 aa11.31□□□□□ -0.6
SMC4-225ENST00000497203 C7P10643 843 aa11.28□□□□□ -0.6
SMC4-225ENST00000497203 ATMINO43313 823 aaPredicted RBP11.26□□□□□ -0.61
SMC4-225ENST00000497203 PLEKHG5O94827 1062 aa11.26□□□□□ -0.61
SMC4-225ENST00000497203 IFNLR1Q8IU57 520 aaPredicted RBP11.25□□□□□ -0.61
SMC4-225ENST00000497203 SLC39A7Q92504 469 aa11.25□□□□□ -0.61
SMC4-225ENST00000497203 SCUBE2Q9NQ36 999 aa11.21□□□□□ -0.61
SMC4-225ENST00000497203 KLHL34Q8N239 644 aa11.2□□□□□ -0.62
SMC4-225ENST00000497203 CCDC61Q9Y6R9 512 aa11.2□□□□□ -0.62
SMC4-225ENST00000497203 ZBTB47Q9UFB7 747 aaPredicted RBP11.19□□□□□ -0.62
SMC4-225ENST00000497203 TSPYL2Q9H2G4 693 aaPredicted RBP11.16□□□□□ -0.62
SMC4-225ENST00000497203 MMRN1Q13201 1228 aa11.15□□□□□ -0.62
SMC4-225ENST00000497203 ATN1P54259 1190 aaPredicted RBP11.13□□□□□ -0.63
SMC4-225ENST00000497203 KIF12Q96FN5 646 aa11.13□□□□□ -0.63
SMC4-225ENST00000497203 NUBP1P53384 320 aa11.11□□□□□ -0.63
SMC4-225ENST00000497203 POTEFA5A3E0 1075 aa11.09□□□□□ -0.63
SMC4-225ENST00000497203 SPNS2Q8IVW8 549 aa11.09□□□□□ -0.63
SMC4-225ENST00000497203 RASEFQ8IZ41 740 aa11.09□□□□□ -0.63
SMC4-225ENST00000497203 SPOCK2Q92563 424 aa11.09□□□□□ -0.63
SMC4-225ENST00000497203 BMP2KQ9NSY1 1161 aaPredicted RBP11.09□□□□□ -0.63
SMC4-225ENST00000497203 TRPC6Q9Y210 931 aa11.06□□□□□ -0.64
SMC4-225ENST00000497203 TIE1P35590 1138 aa11.05□□□□□ -0.64
SMC4-225ENST00000497203 MAP3K13O43283 966 aa11.03□□□□□ -0.64
SMC4-225ENST00000497203 FAM212AQ96EL1 285 aa10.99□□□□□ -0.65
SMC4-225ENST00000497203 ST18O60284 1047 aa10.98□□□□□ -0.65
SMC4-225ENST00000497203 TTLL13PA6NNM8 815 aa10.97□□□□□ -0.65
SMC4-225ENST00000497203 DCAF8Q5TAQ9 597 aa10.97□□□□□ -0.65
SMC4-225ENST00000497203 COLQQ9Y215 455 aaPredicted RBP10.95□□□□□ -0.66
SMC4-225ENST00000497203 CIZ1Q9ULV3 898 aaPredicted RBP10.94□□□□□ -0.66
SMC4-225ENST00000497203 SGIP1Q9BQI5 828 aa10.93□□□□□ -0.66
SMC4-225ENST00000497203 GSE1Q14687 1217 aa10.92□□□□□ -0.66
SMC4-225ENST00000497203 IER5LQ5T953 404 aa10.92□□□□□ -0.66
SMC4-225ENST00000497203 TRIM35Q9UPQ4 493 aa10.89□□□□□ -0.67
SMC4-225ENST00000497203 SEC24BO95487 1268 aa10.88□□□□□ -0.67
SMC4-225ENST00000497203 PCDHB13Q9Y5F0 798 aa10.87□□□□□ -0.67
SMC4-225ENST00000497203 PKD2Q13563 968 aa10.86□□□□□ -0.67
SMC4-225ENST00000497203 PYGBP11216 843 aa10.85□□□□□ -0.67
SMC4-225ENST00000497203 IFNL1Q8IU54 200 aa10.81□□□□□ -0.68
SMC4-225ENST00000497203 CHRM1P11229 460 aaPredicted RBP10.8□□□□□ -0.68
SMC4-225ENST00000497203 RTN4Q9NQC3 1192 aaKnown RBP10.8□□□□□ -0.68
SMC4-225ENST00000497203 SLAIN1Q8ND83 568 aa10.79□□□□□ -0.68
SMC4-225ENST00000497203 TRIM41Q8WV44 630 aa10.78□□□□□ -0.68
SMC4-225ENST00000497203 ECM2O94769 699 aaPredicted RBP10.77□□□□□ -0.69
SMC4-225ENST00000497203 AMER1Q5JTC6 1135 aaPredicted RBP10.77□□□□□ -0.69
SMC4-225ENST00000497203 TMEM106CQ9BVX2 250 aa10.76□□□□□ -0.69
SMC4-225ENST00000497203 PLCG2P16885 1265 aa10.74□□□□□ -0.69
SMC4-225ENST00000497203 IRX5P78411 483 aaPredicted RBP10.74□□□□□ -0.69
SMC4-225ENST00000497203 TMEM121BQ9BXQ6 578 aaPredicted RBP10.74□□□□□ -0.69
SMC4-225ENST00000497203 RNF25Q96BH1 459 aaPredicted RBP10.72□□□□□ -0.69
SMC4-225ENST00000497203 PCDHB8Q9UN66 801 aa10.72□□□□□ -0.69
SMC4-225ENST00000497203 RGL2O15211 777 aa10.69□□□□□ -0.7
SMC4-225ENST00000497203 ZNF467Q7Z7K2 595 aaPredicted RBP10.68□□□□□ -0.7
SMC4-225ENST00000497203 MARVELD3Q96A59 401 aa10.67□□□□□ -0.7
SMC4-225ENST00000497203 RIOK3O14730 519 aaKnown RBP10.65□□□□□ -0.7
SMC4-225ENST00000497203 OCEL1Q9H607 264 aa10.65□□□□□ -0.7
SMC4-225ENST00000497203 KRTAP3-3Q9BYR6 98 aa10.63□□□□□ -0.71
SMC4-225ENST00000497203 KRTAP3-2Q9BYR7 98 aa10.63□□□□□ -0.71
SMC4-225ENST00000497203 PSEN1P49768 467 aa10.59□□□□□ -0.71
SMC4-225ENST00000497203 PDAP1Q13442 181 aaKnown RBP10.59□□□□□ -0.71
SMC4-225ENST00000497203 VGFO15240 615 aaPredicted RBP10.58□□□□□ -0.72
SMC4-225ENST00000497203 SNPHO15079 494 aa10.57□□□□□ -0.72
SMC4-225ENST00000497203 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.57□□□□□ -0.72
SMC4-225ENST00000497203 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.56□□□□□ -0.72
SMC4-225ENST00000497203 ZFP91Q96JP5 570 aaPredicted RBP10.56□□□□□ -0.72
SMC4-225ENST00000497203 POTEB3A0JP26 581 aa10.55□□□□□ -0.72
SMC4-225ENST00000497203 POTEBQ6S5H4 581 aa10.55□□□□□ -0.72
SMC4-225ENST00000497203 PDCD7Q8N8D1 485 aaKnown RBP10.54□□□□□ -0.72
SMC4-225ENST00000497203 DCAF8L2P0C7V8 631 aa10.52□□□□□ -0.73
SMC4-225ENST00000497203 TAOK2Q9UL54 1235 aa10.52□□□□□ -0.73
SMC4-225ENST00000497203 STK25O00506 426 aa10.48□□□□□ -0.73
SMC4-225ENST00000497203 BCL11BQ9C0K0 894 aaPredicted RBP10.48□□□□□ -0.73
SMC4-225ENST00000497203 EMP3P54852 163 aa10.47□□□□□ -0.73
SMC4-225ENST00000497203 HS3ST6Q96QI5 342 aa10.47□□□□□ -0.73
SMC4-225ENST00000497203 CABP2Q9NPB3 220 aa10.47□□□□□ -0.73
SMC4-225ENST00000497203 STK24Q9Y6E0 443 aa10.47□□□□□ -0.73
SMC4-225ENST00000497203 CHGAP10645 457 aaKnown RBP10.46□□□□□ -0.73
SMC4-225ENST00000497203 C3orf67Q6ZVT6 689 aa10.46□□□□□ -0.73
SMC4-225ENST00000497203 HS6ST3Q8IZP7 471 aa10.44□□□□□ -0.74
SMC4-225ENST00000497203 MKRN3Q13064 507 aaKnown RBP10.43□□□□□ -0.74
SMC4-225ENST00000497203 L3MBTL3Q96JM7 780 aaPredicted RBP10.43□□□□□ -0.74
SMC4-225ENST00000497203 ILDR1Q86SU0 546 aaPredicted RBP10.42□□□□□ -0.74
SMC4-225ENST00000497203 FAM205CA6NFA0 338 aa10.41□□□□□ -0.74
SMC4-225ENST00000497203 GOLGA2Q08379 1002 aa10.41□□□□□ -0.74
SMC4-225ENST00000497203 EFCAB3Q8N7B9 438 aa10.41□□□□□ -0.74
SMC4-225ENST00000497203 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.39□□□□□ -0.754e-7■■■□□ 15.1
SMC4-225ENST00000497203 NKX1-1Q15270 411 aaPredicted RBP10.33□□□□□ -0.76
SMC4-225ENST00000497203 RNF166Q96A37 237 aaPredicted RBP10.33□□□□□ -0.76
SMC4-225ENST00000497203 DNAJC5Q9H3Z4 198 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms