RNA–Protein interactions for RNA: ENST00000496296.5

FGFR1-223, Transcript of fibroblast growth factor receptor 1, human

TSL 1 (best)

Gene FGFR1, Length 1,898 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FGFR1-223	ENST00000496296	CTTNBP2	Q8WZ74	1663 aa		32.87	■■■□□ 2.85
FGFR1-223	ENST00000496296	SNAPC4	Q5SXM2	1469 aa		32.84	■■■□□ 2.85
FGFR1-223	ENST00000496296	MAGI1	Q96QZ7	1491 aa	Predicted RBP	32.81	■■■□□ 2.84
FGFR1-223	ENST00000496296	ARHGAP35	Q9NRY4	1499 aa		32.81	■■■□□ 2.84
FGFR1-223	ENST00000496296	ARAP1	Q96P48	1450 aa		32.8	■■■□□ 2.84
FGFR1-223	ENST00000496296	EFCAB5	A4FU69	1503 aa		32.7	■■■□□ 2.82
FGFR1-223	ENST00000496296	SYNJ2	O15056	1496 aa		32.68	■■■□□ 2.82
FGFR1-223	ENST00000496296	APLP2	Q06481	763 aa		32.67	■■■□□ 2.82
FGFR1-223	ENST00000496296	GRIN2A	Q12879	1464 aa		32.66	■■■□□ 2.82
FGFR1-223	ENST00000496296	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.65	■■■□□ 2.82
FGFR1-223	ENST00000496296	CHMP7	Q8WUX9	453 aa	Predicted RBP	32.65	■■■□□ 2.82
FGFR1-223	ENST00000496296	ZEB1	P37275	1124 aa	Predicted RBP	32.62	■■■□□ 2.81
FGFR1-223	ENST00000496296	OSCAR	Q8IYS5	282 aa		32.59	■■■□□ 2.81
FGFR1-223	ENST00000496296	IQGAP2	Q13576	1575 aa		32.58	■■■□□ 2.81
FGFR1-223	ENST00000496296	FBLN2	P98095	1184 aa		32.55	■■■□□ 2.8
FGFR1-223	ENST00000496296	P3H3	Q8IVL6	736 aa		32.54	■■■□□ 2.8
FGFR1-223	ENST00000496296	KIAA0586	Q9BVV6	1533 aa		32.53	■■■□□ 2.8
FGFR1-223	ENST00000496296	SAMD9	Q5K651	1589 aa		32.52	■■■□□ 2.8
FGFR1-223	ENST00000496296	FHOD3	Q2V2M9	1422 aa		32.5	■■■□□ 2.79
FGFR1-223	ENST00000496296	CHD1	O14646	1710 aa		32.45	■■■□□ 2.79
FGFR1-223	ENST00000496296	FMN1	Q68DA7	1419 aa		32.43	■■■□□ 2.78
FGFR1-223	ENST00000496296	TTBK1	Q5TCY1	1321 aa	Predicted RBP	32.43	■■■□□ 2.78
FGFR1-223	ENST00000496296	CEP170	Q5SW79	1584 aa		32.42	■■■□□ 2.78
FGFR1-223	ENST00000496296	UGGT2	Q9NYU1	1516 aa		32.42	■■■□□ 2.78
FGFR1-223	ENST00000496296	NUP160	Q12769	1436 aa		32.41	■■■□□ 2.78
FGFR1-223	ENST00000496296	PCF11	O94913	1555 aa	Known RBP	32.33	■■■□□ 2.77
FGFR1-223	ENST00000496296	CASKIN1	Q8WXD9	1431 aa		32.33	■■■□□ 2.77
FGFR1-223	ENST00000496296	FYCO1	Q9BQS8	1478 aa		32.32	■■■□□ 2.76
FGFR1-223	ENST00000496296	MAP3K1	Q13233	1512 aa		32.31	■■■□□ 2.76
FGFR1-223	ENST00000496296	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.27	■■■□□ 2.76
FGFR1-223	ENST00000496296	KIAA0556	O60303	1618 aa		32.24	■■■□□ 2.75
FGFR1-223	ENST00000496296	TIAM1	Q13009	1591 aa		32.24	■■■□□ 2.75
FGFR1-223	ENST00000496296	DISP1	Q96F81	1524 aa		32.22	■■■□□ 2.75
FGFR1-223	ENST00000496296	KANK4	Q5T7N3	995 aa	Predicted RBP	32.22	■■■□□ 2.75
FGFR1-223	ENST00000496296	JPH4	Q96JJ6	628 aa		32.2	■■■□□ 2.75
FGFR1-223	ENST00000496296	CARMIL2	Q6F5E8	1435 aa		32.18	■■■□□ 2.74
FGFR1-223	ENST00000496296	CFAP43	Q8NDM7	1665 aa		32.16	■■■□□ 2.74
FGFR1-223	ENST00000496296	LRRC9	Q6ZRR7	1453 aa		32.11	■■■□□ 2.73
FGFR1-223	ENST00000496296	HECW1	Q76N89	1606 aa		32.07	■■■□□ 2.72
FGFR1-223	ENST00000496296	CCDC18	Q5T9S5	1454 aa		32.03	■■■□□ 2.72
FGFR1-223	ENST00000496296	CLASP1	Q7Z460	1538 aa		32.01	■■■□□ 2.72
FGFR1-223	ENST00000496296	ARHGEF11	O15085	1522 aa		31.99	■■■□□ 2.71
FGFR1-223	ENST00000496296	PRG4	Q92954	1404 aa	Predicted RBP	31.99	■■■□□ 2.71
FGFR1-223	ENST00000496296	RIMBP3C	A6NJZ7	1639 aa		31.98	■■■□□ 2.71
FGFR1-223	ENST00000496296	RIMBP3B	A6NNM3	1639 aa		31.98	■■■□□ 2.71
FGFR1-223	ENST00000496296	RIMBP3	Q9UFD9	1639 aa		31.98	■■■□□ 2.71
FGFR1-223	ENST00000496296	LRRIQ1	Q96JM4	1722 aa		31.96	■■■□□ 2.71
FGFR1-223	ENST00000496296	SHROOM2	Q13796	1616 aa		31.95	■■■□□ 2.7
FGFR1-223	ENST00000496296	RAPGEF6	Q8TEU7	1601 aa		31.94	■■■□□ 2.7
FGFR1-223	ENST00000496296	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	31.93	■■■□□ 2.7
FGFR1-223	ENST00000496296	MTUS2	Q5JR59	1369 aa		31.93	■■■□□ 2.7
FGFR1-223	ENST00000496296	EPRS	P07814	1512 aa	Known RBP	31.93	■■■□□ 2.7
FGFR1-223	ENST00000496296	CCER1	Q8TC90	406 aa	Predicted RBP	31.91	■■■□□ 2.7
FGFR1-223	ENST00000496296	RRBP1	Q9P2E9	1410 aa	Known RBP	31.88	■■■□□ 2.69
FGFR1-223	ENST00000496296	EHBP1L1	Q8N3D4	1523 aa		31.85	■■■□□ 2.69
FGFR1-223	ENST00000496296	NUP153	P49790	1475 aa	Known RBP	31.84	■■■□□ 2.69
FGFR1-223	ENST00000496296	PLB1	Q6P1J6	1458 aa		31.82	■■■□□ 2.68
FGFR1-223	ENST00000496296	PTPRG	P23470	1445 aa		31.82	■■■□□ 2.68
FGFR1-223	ENST00000496296	CYB5RL	Q6IPT4	315 aa		31.81	■■■□□ 2.68
FGFR1-223	ENST00000496296	CDK13	Q14004	1512 aa	Known RBP	31.81	■■■□□ 2.68
FGFR1-223	ENST00000496296	CCNB3	Q8WWL7	1395 aa		31.8	■■■□□ 2.68
FGFR1-223	ENST00000496296	PHLDB1	Q86UU1	1377 aa		31.79	■■■□□ 2.68
FGFR1-223	ENST00000496296	ARID3C	A6NKF2	412 aa		31.76	■■■□□ 2.68
FGFR1-223	ENST00000496296	CDK11A	Q9UQ88	783 aa	Predicted RBP	31.76	■■■□□ 2.68
FGFR1-223	ENST00000496296	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.76	■■■□□ 2.67
FGFR1-223	ENST00000496296	ABCA8	O94911	1581 aa		31.76	■■■□□ 2.67
FGFR1-223	ENST00000496296	HNRNPUL2	Q1KMD3	747 aa	Known RBP	31.74	■■■□□ 2.67
FGFR1-223	ENST00000496296	MAGI3	Q5TCQ9	1506 aa		31.73	■■■□□ 2.67
FGFR1-223	ENST00000496296	ERCC6L2	Q5T890	1561 aa		31.71	■■■□□ 2.67
FGFR1-223	ENST00000496296	NCOA2	Q15596	1464 aa		31.71	■■■□□ 2.67
FGFR1-223	ENST00000496296	UACA	Q9BZF9	1416 aa		31.63	■■■□□ 2.65
FGFR1-223	ENST00000496296	MYOM3	Q5VTT5	1437 aa		31.61	■■■□□ 2.65
FGFR1-223	ENST00000496296	FGD6	Q6ZV73	1430 aa		31.6	■■■□□ 2.65
FGFR1-223	ENST00000496296	FAM50A	Q14320	339 aa	Known RBP	31.59	■■■□□ 2.65
FGFR1-223	ENST00000496296	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	31.58	■■■□□ 2.65
FGFR1-223	ENST00000496296	TRO	Q12816	1431 aa	Predicted RBP	31.56	■■■□□ 2.64
FGFR1-223	ENST00000496296	ATP10B	O94823	1461 aa		31.56	■■■□□ 2.64
FGFR1-223	ENST00000496296	PLEKHD1	A6NEE1	506 aa		31.52	■■■□□ 2.64
FGFR1-223	ENST00000496296	ABCC2	Q92887	1545 aa		31.51	■■■□□ 2.63
FGFR1-223	ENST00000496296	ITGAE	P38570	1179 aa		31.5	■■■□□ 2.63
FGFR1-223	ENST00000496296	MIA2	Q96PC5	1412 aa		31.45	■■■□□ 2.63
FGFR1-223	ENST00000496296	ADCY10	Q96PN6	1610 aa		31.44	■■■□□ 2.62
FGFR1-223	ENST00000496296	UHRF1BP1L	A0JNW5	1464 aa		31.44	■■■□□ 2.62
FGFR1-223	ENST00000496296	PTPN23	Q9H3S7	1636 aa		31.41	■■■□□ 2.62
FGFR1-223	ENST00000496296	KIF14	Q15058	1648 aa		31.38	■■■□□ 2.61
FGFR1-223	ENST00000496296	CLSPN	Q9HAW4	1339 aa		31.38	■■■□□ 2.61
FGFR1-223	ENST00000496296	TCOF1	Q13428	1488 aa	Known RBP	31.37	■■■□□ 2.61
FGFR1-223	ENST00000496296	ITSN2	Q9NZM3	1697 aa		31.32	■■■□□ 2.6
FGFR1-223	ENST00000496296	KDM5B	Q9UGL1	1544 aa		31.3	■■■□□ 2.6
FGFR1-223	ENST00000496296	GPATCH8	Q9UKJ3	1502 aa	Known RBP	31.27	■■■□□ 2.6
FGFR1-223	ENST00000496296	ZCCHC11	Q5TAX3	1644 aa	Known RBP	31.27	■■■□□ 2.6
FGFR1-223	ENST00000496296	CFDP1	Q9UEE9	299 aa	Predicted RBP	31.25	■■■□□ 2.59
FGFR1-223	ENST00000496296	ABCC10	Q5T3U5	1492 aa		31.25	■■■□□ 2.59
FGFR1-223	ENST00000496296	DHX57	Q6P158	1386 aa	Known RBP	31.24	■■■□□ 2.59
FGFR1-223	ENST00000496296	SETD5	Q9C0A6	1442 aa		31.24	■■■□□ 2.59
FGFR1-223	ENST00000496296	RAB3GAP2	Q9H2M9	1393 aa		31.17	■■■□□ 2.58
FGFR1-223	ENST00000496296	PTPRK	Q15262	1439 aa		31.16	■■■□□ 2.58
FGFR1-223	ENST00000496296	CDC42BPA	Q5VT25	1732 aa		31.15	■■■□□ 2.58
FGFR1-223	ENST00000496296	TRH	P20396	242 aa	Predicted RBP	31.14	■■■□□ 2.58
FGFR1-223	ENST00000496296	CAMSAP2	Q08AD1	1489 aa		31.14	■■■□□ 2.57

Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms