RNA–Protein interactions for RNA: ENST00000496205.1

CLK1-214, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 480 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-214ENST00000496205 MIER1Q8N108 512 aa13.22□□□□□ -0.29
CLK1-214ENST00000496205 ATMINO43313 823 aaPredicted RBP13.2□□□□□ -0.3
CLK1-214ENST00000496205 KIF12Q96FN5 646 aa13.17□□□□□ -0.3
CLK1-214ENST00000496205 RASEFQ8IZ41 740 aa13.16□□□□□ -0.3
CLK1-214ENST00000496205 METRNQ9UJH8 293 aa13.14□□□□□ -0.31
CLK1-214ENST00000496205 TRPC6Q9Y210 931 aa13.12□□□□□ -0.31
CLK1-214ENST00000496205 PLEKHG5O94827 1062 aa13.11□□□□□ -0.31
CLK1-214ENST00000496205 POTEJP0CG39 1038 aa13.11□□□□□ -0.31
CLK1-214ENST00000496205 C7P10643 843 aa13.1□□□□□ -0.31
CLK1-214ENST00000496205 ATN1P54259 1190 aaPredicted RBP13.1□□□□□ -0.31
CLK1-214ENST00000496205 SLC39A7Q92504 469 aa13.1□□□□□ -0.31
CLK1-214ENST00000496205 MAP3K13O43283 966 aa13.09□□□□□ -0.31
CLK1-214ENST00000496205 PLCD3Q8N3E9 789 aa13.07□□□□□ -0.32
CLK1-214ENST00000496205 BMP2KQ9NSY1 1161 aaPredicted RBP13.06□□□□□ -0.32
CLK1-214ENST00000496205 FKBP8Q14318 412 aa13.03□□□□□ -0.32
CLK1-214ENST00000496205 NUBP1P53384 320 aa13.01□□□□□ -0.33
CLK1-214ENST00000496205 POTEFA5A3E0 1075 aa13□□□□□ -0.33
CLK1-214ENST00000496205 TIE1P35590 1138 aa12.97□□□□□ -0.33
CLK1-214ENST00000496205 TTLL13PA6NNM8 815 aa12.94□□□□□ -0.34
CLK1-214ENST00000496205 ZBTB47Q9UFB7 747 aaPredicted RBP12.92□□□□□ -0.34
CLK1-214ENST00000496205 MAMSTRQ6ZN01 415 aa12.91□□□□□ -0.34
CLK1-214ENST00000496205 PLSCR2Q9NRY7 297 aa12.91□□□□□ -0.34
CLK1-214ENST00000496205 PCDHB13Q9Y5F0 798 aa12.91□□□□□ -0.34
CLK1-214ENST00000496205 POTEMA6NI47 508 aa12.9□□□□□ -0.34
CLK1-214ENST00000496205 COLQQ9Y215 455 aaPredicted RBP12.9□□□□□ -0.34
CLK1-214ENST00000496205 SGIP1Q9BQI5 828 aa12.89□□□□□ -0.35
CLK1-214ENST00000496205 POTEGQ6S5H5 508 aa12.87□□□□□ -0.35
CLK1-214ENST00000496205 IFNL1Q8IU54 200 aa12.87□□□□□ -0.35
CLK1-214ENST00000496205 TRIM35Q9UPQ4 493 aa12.85□□□□□ -0.35
CLK1-214ENST00000496205 FAM212AQ96EL1 285 aa12.84□□□□□ -0.35
CLK1-214ENST00000496205 SCUBE2Q9NQ36 999 aa12.84□□□□□ -0.35
CLK1-214ENST00000496205 LCE2DQ5TA82 110 aaPredicted RBP12.83□□□□□ -0.36
CLK1-214ENST00000496205 SEC24BO95487 1268 aa12.81□□□□□ -0.36
CLK1-214ENST00000496205 FAM163AQ96GL9 167 aaPredicted RBP12.78□□□□□ -0.36
CLK1-214ENST00000496205 IER5LQ5T953 404 aa12.77□□□□□ -0.37
CLK1-214ENST00000496205 TMEM106CQ9BVX2 250 aa12.77□□□□□ -0.37
CLK1-214ENST00000496205 DCAF8Q5TAQ9 597 aa12.75□□□□□ -0.37
CLK1-214ENST00000496205 PYGBP11216 843 aa12.73□□□□□ -0.37
CLK1-214ENST00000496205 FBXO3Q9UK99 471 aa12.72□□□□□ -0.37
CLK1-214ENST00000496205 PCDHB8Q9UN66 801 aa12.68□□□□□ -0.38
CLK1-214ENST00000496205 IRX5P78411 483 aaPredicted RBP12.66□□□□□ -0.38
CLK1-214ENST00000496205 VASPP50552 380 aaPredicted RBP12.64□□□□□ -0.39
CLK1-214ENST00000496205 PLCG2P16885 1265 aa12.63□□□□□ -0.39
CLK1-214ENST00000496205 PCDH10Q9P2E7 1040 aa12.63□□□□□ -0.39
CLK1-214ENST00000496205 KLHL34Q8N239 644 aa12.61□□□□□ -0.39
CLK1-214ENST00000496205 SLAIN1Q8ND83 568 aa12.6□□□□□ -0.39
CLK1-214ENST00000496205 OCEL1Q9H607 264 aa12.57□□□□□ -0.4
CLK1-214ENST00000496205 GSE1Q14687 1217 aa12.54□□□□□ -0.4
CLK1-214ENST00000496205 ST18O60284 1047 aa12.5□□□□□ -0.41
CLK1-214ENST00000496205 CHRM1P11229 460 aaPredicted RBP12.49□□□□□ -0.41
CLK1-214ENST00000496205 ZNF467Q7Z7K2 595 aaPredicted RBP12.48□□□□□ -0.41
CLK1-214ENST00000496205 PDCD7Q8N8D1 485 aaKnown RBP12.46□□□□□ -0.41
CLK1-214ENST00000496205 IFNLR1Q8IU57 520 aaPredicted RBP12.45□□□□□ -0.42
CLK1-214ENST00000496205 CDAN1Q8IWY9 1227 aa12.45□□□□□ -0.42
CLK1-214ENST00000496205 PSEN1P49768 467 aa12.43□□□□□ -0.42
CLK1-214ENST00000496205 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.42□□□□□ -0.42
CLK1-214ENST00000496205 MKRN3Q13064 507 aaKnown RBP12.4□□□□□ -0.42
CLK1-214ENST00000496205 GOLGA2Q08379 1002 aa12.38□□□□□ -0.43
CLK1-214ENST00000496205 SPOCK2Q92563 424 aa12.38□□□□□ -0.43
CLK1-214ENST00000496205 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.37□□□□□ -0.433e-13■■□□□ 11.6
CLK1-214ENST00000496205 CIZ1Q9ULV3 898 aaPredicted RBP12.36□□□□□ -0.43
CLK1-214ENST00000496205 PDAP1Q13442 181 aaKnown RBP12.33□□□□□ -0.44
CLK1-214ENST00000496205 ILDR1Q86SU0 546 aaPredicted RBP12.32□□□□□ -0.44
CLK1-214ENST00000496205 L3MBTL3Q96JM7 780 aaPredicted RBP12.32□□□□□ -0.44
CLK1-214ENST00000496205 SNPHO15079 494 aa12.31□□□□□ -0.44
CLK1-214ENST00000496205 DPY19L2Q6NUT2 758 aa12.31□□□□□ -0.44
CLK1-214ENST00000496205 C3orf67Q6ZVT6 689 aa12.3□□□□□ -0.44
CLK1-214ENST00000496205 MARVELD3Q96A59 401 aa12.3□□□□□ -0.44
CLK1-214ENST00000496205 TMEM121BQ9BXQ6 578 aaPredicted RBP12.3□□□□□ -0.44
CLK1-214ENST00000496205 CABP2Q9NPB3 220 aa12.28□□□□□ -0.44
CLK1-214ENST00000496205 BOLA1Q9Y3E2 137 aa12.17□□□□□ -0.46
CLK1-214ENST00000496205 POTEB3A0JP26 581 aa12.16□□□□□ -0.46
CLK1-214ENST00000496205 POTEBQ6S5H4 581 aa12.16□□□□□ -0.46
CLK1-214ENST00000496205 SPNS2Q8IVW8 549 aa12.16□□□□□ -0.46
CLK1-214ENST00000496205 EMP3P54852 163 aa12.14□□□□□ -0.47
CLK1-214ENST00000496205 EFCAB3Q8N7B9 438 aa12.14□□□□□ -0.47
CLK1-214ENST00000496205 MMRN1Q13201 1228 aa12.13□□□□□ -0.47
CLK1-214ENST00000496205 HOXB3P14651 431 aaPredicted RBP12.1□□□□□ -0.47
CLK1-214ENST00000496205 TRIM41Q8WV44 630 aa12.1□□□□□ -0.47
CLK1-214ENST00000496205 FAM205CA6NFA0 338 aa12.09□□□□□ -0.47
CLK1-214ENST00000496205 G3V3G9 751 aa12.09□□□□□ -0.47
CLK1-214ENST00000496205 HS3ST6Q96QI5 342 aa12.09□□□□□ -0.47
CLK1-214ENST00000496205 RNF25Q96BH1 459 aaPredicted RBP12.07□□□□□ -0.48
CLK1-214ENST00000496205 KRTAP3-3Q9BYR6 98 aa12.06□□□□□ -0.48
CLK1-214ENST00000496205 KRTAP3-2Q9BYR7 98 aa12.06□□□□□ -0.48
CLK1-214ENST00000496205 RIOK3O14730 519 aaKnown RBP12.02□□□□□ -0.49
CLK1-214ENST00000496205 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.01□□□□□ -0.49
CLK1-214ENST00000496205 TMEM92Q6UXU6 159 aa12.01□□□□□ -0.49
CLK1-214ENST00000496205 ZFP91Q96JP5 570 aaPredicted RBP12.01□□□□□ -0.49
CLK1-214ENST00000496205 HOXB1P14653 301 aaPredicted RBP11.99□□□□□ -0.49
CLK1-214ENST00000496205 MICALL2Q8IY33 904 aa11.99□□□□□ -0.49
CLK1-214ENST00000496205 MS4A4AQ96JQ5 239 aa11.99□□□□□ -0.49
CLK1-214ENST00000496205 ZNF710Q8N1W2 664 aa11.97□□□□□ -0.49
CLK1-214ENST00000496205 SOX12O15370 315 aa11.96□□□□□ -0.49
CLK1-214ENST00000496205 PHF8Q9UPP1 1060 aa11.96□□□□□ -0.49
CLK1-214ENST00000496205 DOK7Q18PE1 504 aa11.95□□□□□ -0.5
CLK1-214ENST00000496205 VGFO15240 615 aaPredicted RBP11.94□□□□□ -0.5
CLK1-214ENST00000496205 ERBB3P21860 1342 aa11.9□□□□□ -0.5
CLK1-214ENST00000496205 RIMBP2O15034 1052 aa11.85□□□□□ -0.51
CLK1-214ENST00000496205 VARS2Q5ST30 1063 aaKnown RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms