RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 CADPSQ9ULU8 1353 aa10.93□□□□□ -0.66
USP39-219ENST00000496047 CUX1P39880 1505 aa10.93□□□□□ -0.66
USP39-219ENST00000496047 TNIKQ9UKE5 1360 aa10.9□□□□□ -0.66
USP39-219ENST00000496047 ERICH3Q5RHP9 1530 aa10.9□□□□□ -0.66
USP39-219ENST00000496047 DNMBPQ6XZF7 1577 aa10.9□□□□□ -0.67
USP39-219ENST00000496047 FANCD2Q9BXW9 1451 aa10.87□□□□□ -0.67
USP39-219ENST00000496047 RUSC2Q8N2Y8 1516 aa10.87□□□□□ -0.67
USP39-219ENST00000496047 CEP162Q5TB80 1403 aa10.86□□□□□ -0.67
USP39-219ENST00000496047 KIF27Q86VH2 1401 aa10.86□□□□□ -0.67
USP39-219ENST00000496047 KIF21AQ7Z4S6 1674 aa10.85□□□□□ -0.67
USP39-219ENST00000496047 TRIM26Q12899 539 aaPredicted RBP10.85□□□□□ -0.67
USP39-219ENST00000496047 UBTFP17480 764 aaKnown RBP10.84□□□□□ -0.67
USP39-219ENST00000496047 CUL7Q14999 1698 aa10.82□□□□□ -0.68
USP39-219ENST00000496047 FGD5Q6ZNL6 1462 aa10.81□□□□□ -0.68
USP39-219ENST00000496047 WDR97A6NE52 1622 aa10.81□□□□□ -0.68
USP39-219ENST00000496047 PCGF6Q9BYE7 350 aa10.81□□□□□ -0.68
USP39-219ENST00000496047 PDS5BQ9NTI5 1447 aa10.8□□□□□ -0.68
USP39-219ENST00000496047 CTTNBP2Q8WZ74 1663 aa10.79□□□□□ -0.68
USP39-219ENST00000496047 ILDR1Q86SU0 546 aaPredicted RBP10.78□□□□□ -0.68
USP39-219ENST00000496047 TOPBP1Q92547 1522 aa10.78□□□□□ -0.68
USP39-219ENST00000496047 PRXQ9BXM0 1461 aa10.76□□□□□ -0.69
USP39-219ENST00000496047 RAPGEF2Q9Y4G8 1499 aa10.76□□□□□ -0.69
USP39-219ENST00000496047 NESP48681 1621 aa10.76□□□□□ -0.69
USP39-219ENST00000496047 CLIP1P30622 1438 aa10.75□□□□□ -0.69
USP39-219ENST00000496047 AKT1S1Q96B36 256 aa10.75□□□□□ -0.69
USP39-219ENST00000496047 ABCA10Q8WWZ4 1543 aa10.74□□□□□ -0.69
USP39-219ENST00000496047 ZBTB12Q9Y330 459 aaPredicted RBP10.73□□□□□ -0.69
USP39-219ENST00000496047 PBRM1Q86U86 1689 aa10.73□□□□□ -0.69
USP39-219ENST00000496047 POLA1P09884 1462 aaPredicted RBP10.72□□□□□ -0.69
USP39-219ENST00000496047 ATF5Q9Y2D1 282 aaPredicted RBP10.71□□□□□ -0.69
USP39-219ENST00000496047 VPS8Q8N3P4 1428 aa10.7□□□□□ -0.7
USP39-219ENST00000496047 OSCARQ8IYS5 282 aa10.7□□□□□ -0.7
USP39-219ENST00000496047 SP7Q8TDD2 431 aaPredicted RBP10.7□□□□□ -0.7
USP39-219ENST00000496047 ABCA5Q8WWZ7 1642 aa10.69□□□□□ -0.7
USP39-219ENST00000496047 URB2Q14146 1524 aaKnown RBP10.68□□□□□ -0.7
USP39-219ENST00000496047 HRCP23327 699 aa10.68□□□□□ -0.7
USP39-219ENST00000496047 REM2Q8IYK8 340 aaPredicted RBP10.66□□□□□ -0.7
USP39-219ENST00000496047 MRC2Q9UBG0 1479 aa10.66□□□□□ -0.7
USP39-219ENST00000496047 CARMIL1Q5VZK9 1371 aa10.64□□□□□ -0.71
USP39-219ENST00000496047 TARBP1Q13395 1621 aaKnown RBP10.63□□□□□ -0.71
USP39-219ENST00000496047 ZEB1P37275 1124 aaPredicted RBP10.63□□□□□ -0.71
USP39-219ENST00000496047 EFCAB5A4FU69 1503 aa10.63□□□□□ -0.71
USP39-219ENST00000496047 THOC2Q8NI27 1593 aaKnown RBP10.62□□□□□ -0.71
USP39-219ENST00000496047 PIP4P2Q8N4L2 257 aa10.62□□□□□ -0.71
USP39-219ENST00000496047 RAD54L2Q9Y4B4 1467 aa10.61□□□□□ -0.71
USP39-219ENST00000496047 WDR62O43379 1518 aa10.6□□□□□ -0.71
USP39-219ENST00000496047 IGF1RP08069 1367 aa10.6□□□□□ -0.71
USP39-219ENST00000496047 GAPVD1Q14C86 1478 aa10.6□□□□□ -0.71
USP39-219ENST00000496047 ARAP1Q96P48 1450 aa10.6□□□□□ -0.71
USP39-219ENST00000496047 CFAP43Q8NDM7 1665 aa10.6□□□□□ -0.71
USP39-219ENST00000496047 HAX1O00165 279 aa10.58□□□□□ -0.72
USP39-219ENST00000496047 FHAD1B1AJZ9 1412 aa10.57□□□□□ -0.72
USP39-219ENST00000496047 IFT140Q96RY7 1462 aa10.56□□□□□ -0.72
USP39-219ENST00000496047 ADAMTS12P58397 1594 aa10.56□□□□□ -0.72
USP39-219ENST00000496047 ARHGAP35Q9NRY4 1499 aa10.55□□□□□ -0.72
USP39-219ENST00000496047 PITPNM1O00562 1244 aa10.55□□□□□ -0.72
USP39-219ENST00000496047 RANGAP1P46060 587 aaPredicted RBP10.54□□□□□ -0.72
USP39-219ENST00000496047 MAP3K1Q13233 1512 aa10.53□□□□□ -0.72
USP39-219ENST00000496047 RIMBP3CA6NJZ7 1639 aa10.53□□□□□ -0.72
USP39-219ENST00000496047 RIMBP3BA6NNM3 1639 aa10.53□□□□□ -0.72
USP39-219ENST00000496047 RIMBP3Q9UFD9 1639 aa10.53□□□□□ -0.72
USP39-219ENST00000496047 TIAM1Q13009 1591 aa10.52□□□□□ -0.72
USP39-219ENST00000496047 PPARGC1BQ86YN6 1023 aaKnown RBP10.52□□□□□ -0.73
USP39-219ENST00000496047 EIF4G3O43432 1585 aaKnown RBP10.52□□□□□ -0.73
USP39-219ENST00000496047 PCF11O94913 1555 aaKnown RBP10.51□□□□□ -0.73
USP39-219ENST00000496047 SAMD9Q5K651 1589 aa10.51□□□□□ -0.73
USP39-219ENST00000496047 GRIN2BQ13224 1484 aa10.5□□□□□ -0.73
USP39-219ENST00000496047 FYCO1Q9BQS8 1478 aa10.49□□□□□ -0.73
USP39-219ENST00000496047 IQGAP2Q13576 1575 aa10.49□□□□□ -0.73
USP39-219ENST00000496047 FXR2P51116 673 aaKnown RBP eCLIP10.48□□□□□ -0.73
USP39-219ENST00000496047 TTBK1Q5TCY1 1321 aaPredicted RBP10.48□□□□□ -0.73
USP39-219ENST00000496047 FMN1Q68DA7 1419 aa10.48□□□□□ -0.73
USP39-219ENST00000496047 AQRO60306 1485 aaKnown RBP eCLIP10.48□□□□□ -0.731e-6■■■□□ 15.3
USP39-219ENST00000496047 CYB5RLQ6IPT4 315 aa10.47□□□□□ -0.73
USP39-219ENST00000496047 TDRD9Q8NDG6 1382 aaKnown RBP10.47□□□□□ -0.73
USP39-219ENST00000496047 HECW1Q76N89 1606 aa10.44□□□□□ -0.74
USP39-219ENST00000496047 ARHGEF11O15085 1522 aa10.44□□□□□ -0.74
USP39-219ENST00000496047 MAGI1Q96QZ7 1491 aaPredicted RBP10.43□□□□□ -0.74
USP39-219ENST00000496047 SUPT6HQ7KZ85 1726 aaKnown RBP10.42□□□□□ -0.74
USP39-219ENST00000496047 CASKIN1Q8WXD9 1431 aa10.41□□□□□ -0.74
USP39-219ENST00000496047 FKBP8Q14318 412 aa10.41□□□□□ -0.74
USP39-219ENST00000496047 CCER1Q8TC90 406 aaPredicted RBP10.41□□□□□ -0.74
USP39-219ENST00000496047 LRRIQ1Q96JM4 1722 aa10.41□□□□□ -0.74
USP39-219ENST00000496047 FHOD3Q2V2M9 1422 aa10.41□□□□□ -0.74
USP39-219ENST00000496047 SNAPC4Q5SXM2 1469 aa10.4□□□□□ -0.74
USP39-219ENST00000496047 CCDC18Q5T9S5 1454 aa10.4□□□□□ -0.74
USP39-219ENST00000496047 LRRC9Q6ZRR7 1453 aa10.39□□□□□ -0.75
USP39-219ENST00000496047 EHBP1L1Q8N3D4 1523 aa10.38□□□□□ -0.75
USP39-219ENST00000496047 FBLN2P98095 1184 aa10.38□□□□□ -0.75
USP39-219ENST00000496047 RRBP1Q9P2E9 1410 aaKnown RBP10.38□□□□□ -0.75
USP39-219ENST00000496047 UGGT2Q9NYU1 1516 aa10.38□□□□□ -0.75
USP39-219ENST00000496047 ZNF608Q9ULD9 1512 aaPredicted RBP10.37□□□□□ -0.75
USP39-219ENST00000496047 KIAA0556O60303 1618 aa10.36□□□□□ -0.75
USP39-219ENST00000496047 GRIN2AQ12879 1464 aa10.36□□□□□ -0.75
USP39-219ENST00000496047 SYNJ2O15056 1496 aa10.36□□□□□ -0.75
USP39-219ENST00000496047 SPDYE2BA6NHP3 402 aa10.35□□□□□ -0.75
USP39-219ENST00000496047 SPDYE6P0CI01 402 aa10.35□□□□□ -0.75
USP39-219ENST00000496047 EVX2Q03828 476 aa10.35□□□□□ -0.75
USP39-219ENST00000496047 SPDYE2Q495Y8 402 aa10.35□□□□□ -0.75
USP39-219ENST00000496047 KIAA0586Q9BVV6 1533 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 1628.4 ms