RNA–Protein interactions for RNA: ENST00000494613.5

LIMS2-216, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 1,137 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-216ENST00000494613 SHROOM2Q13796 1616 aa26.68■■□□□ 1.86
LIMS2-216ENST00000494613 KIAA0586Q9BVV6 1533 aa26.62■■□□□ 1.85
LIMS2-216ENST00000494613 CUL7Q14999 1698 aa26.61■■□□□ 1.85
LIMS2-216ENST00000494613 RUSC2Q8N2Y8 1516 aa26.59■■□□□ 1.85
LIMS2-216ENST00000494613 RAPGEF2Q9Y4G8 1499 aa26.45■■□□□ 1.82
LIMS2-216ENST00000494613 NPM1P06748 294 aaKnown RBP eCLIP26.43■■□□□ 1.82
LIMS2-216ENST00000494613 TTBK1Q5TCY1 1321 aaPredicted RBP26.39■■□□□ 1.82
LIMS2-216ENST00000494613 PTPRGP23470 1445 aa26.37■■□□□ 1.81
LIMS2-216ENST00000494613 CARMIL2Q6F5E8 1435 aa26.35■■□□□ 1.81
LIMS2-216ENST00000494613 IQGAP2Q13576 1575 aa26.32■■□□□ 1.8
LIMS2-216ENST00000494613 TNIKQ9UKE5 1360 aa26.32■■□□□ 1.8
LIMS2-216ENST00000494613 CSRNP3Q8WYN3 585 aa26.3■■□□□ 1.8
LIMS2-216ENST00000494613 PRXQ9BXM0 1461 aa26.26■■□□□ 1.79
LIMS2-216ENST00000494613 FAM69CQ0P6D2 419 aa26.25■■□□□ 1.79
LIMS2-216ENST00000494613 DISP1Q96F81 1524 aa26.24■■□□□ 1.79
LIMS2-216ENST00000494613 ADCY10Q96PN6 1610 aa26.23■■□□□ 1.79
LIMS2-216ENST00000494613 UGGT2Q9NYU1 1516 aa26.2■■□□□ 1.79
LIMS2-216ENST00000494613 FAM9AQ8IZU1 332 aaPredicted RBP26.16■■□□□ 1.78
LIMS2-216ENST00000494613 CHIC1Q5VXU3 224 aa26.14■■□□□ 1.78
LIMS2-216ENST00000494613 ABCC10Q5T3U5 1492 aa26.14■■□□□ 1.78
LIMS2-216ENST00000494613 UACAQ9BZF9 1416 aa26.14■■□□□ 1.77
LIMS2-216ENST00000494613 MAPKBP1O60336 1514 aa26.13■■□□□ 1.77
LIMS2-216ENST00000494613 ABCC2Q92887 1545 aa26.09■■□□□ 1.77
LIMS2-216ENST00000494613 KIF13AQ9H1H9 1805 aa26.08■■□□□ 1.77
LIMS2-216ENST00000494613 UHRF1BP1LA0JNW5 1464 aa26.08■■□□□ 1.77
LIMS2-216ENST00000494613 EEA1Q15075 1411 aa26.07■■□□□ 1.76
LIMS2-216ENST00000494613 KIAA0556O60303 1618 aa26.05■■□□□ 1.76
LIMS2-216ENST00000494613 CTTNBP2Q8WZ74 1663 aa26.04■■□□□ 1.76
LIMS2-216ENST00000494613 P3H3Q8IVL6 736 aa26.04■■□□□ 1.76
LIMS2-216ENST00000494613 GOLGA3Q08378 1498 aa26.04■■□□□ 1.76
LIMS2-216ENST00000494613 ASXL2Q76L83 1435 aa26■■□□□ 1.75
LIMS2-216ENST00000494613 DIP2BQ9P265 1576 aa25.99■■□□□ 1.75
LIMS2-216ENST00000494613 KDM5BQ9UGL1 1544 aa25.97■■□□□ 1.75
LIMS2-216ENST00000494613 PLB1Q6P1J6 1458 aa25.97■■□□□ 1.75
LIMS2-216ENST00000494613 RANGAP1P46060 587 aaPredicted RBP25.94■■□□□ 1.74
LIMS2-216ENST00000494613 EHMT2Q96KQ7 1210 aa25.87■■□□□ 1.73
LIMS2-216ENST00000494613 ABCA8O94911 1581 aa25.84■■□□□ 1.73
LIMS2-216ENST00000494613 KCNH8Q96L42 1107 aa25.84■■□□□ 1.73
LIMS2-216ENST00000494613 ZCCHC11Q5TAX3 1644 aaKnown RBP25.83■■□□□ 1.73
LIMS2-216ENST00000494613 TSPOAP1O95153 1857 aa25.83■■□□□ 1.72
LIMS2-216ENST00000494613 ARID3CA6NKF2 412 aa25.82■■□□□ 1.72
LIMS2-216ENST00000494613 UBTFP17480 764 aaKnown RBP25.82■■□□□ 1.72
LIMS2-216ENST00000494613 EPRSP07814 1512 aaKnown RBP25.82■■□□□ 1.72
LIMS2-216ENST00000494613 GLI2P10070 1586 aa25.82■■□□□ 1.72
LIMS2-216ENST00000494613 KIF21BO75037 1637 aa25.75■■□□□ 1.71
LIMS2-216ENST00000494613 WDR7Q9Y4E6 1490 aa25.75■■□□□ 1.71
LIMS2-216ENST00000494613 AEBP2Q6ZN18 517 aaPredicted RBP25.75■■□□□ 1.71
LIMS2-216ENST00000494613 SAMD9Q5K651 1589 aa25.74■■□□□ 1.71
LIMS2-216ENST00000494613 ATP10BO94823 1461 aa25.74■■□□□ 1.71
LIMS2-216ENST00000494613 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.7■■□□□ 1.7
LIMS2-216ENST00000494613 HNRNPUL2Q1KMD3 747 aaKnown RBP25.7■■□□□ 1.7
LIMS2-216ENST00000494613 FHOD3Q2V2M9 1422 aa25.7■■□□□ 1.7
LIMS2-216ENST00000494613 KDM6BO15054 1643 aa25.68■■□□□ 1.7
LIMS2-216ENST00000494613 PPRC1Q5VV67 1664 aaKnown RBP25.65■■□□□ 1.7
LIMS2-216ENST00000494613 CD109Q6YHK3 1445 aa25.65■■□□□ 1.7
LIMS2-216ENST00000494613 MAP3K4Q9Y6R4 1608 aa25.64■■□□□ 1.7
LIMS2-216ENST00000494613 COL17A1Q9UMD9 1497 aaPredicted RBP25.62■■□□□ 1.69
LIMS2-216ENST00000494613 TEX14Q8IWB6 1497 aa25.6■■□□□ 1.69
LIMS2-216ENST00000494613 RAPGEF6Q8TEU7 1601 aa25.6■■□□□ 1.69
LIMS2-216ENST00000494613 PLEKHD1A6NEE1 506 aa25.58■■□□□ 1.69
LIMS2-216ENST00000494613 NUP153P49790 1475 aaKnown RBP25.57■■□□□ 1.68
LIMS2-216ENST00000494613 EFCAB5A4FU69 1503 aa25.56■■□□□ 1.68
LIMS2-216ENST00000494613 MAGI3Q5TCQ9 1506 aa25.54■■□□□ 1.68
LIMS2-216ENST00000494613 ATP1B4Q9UN42 357 aaPredicted RBP25.53■■□□□ 1.68
LIMS2-216ENST00000494613 KDM4FA0A1W2PPD8 638 aa25.5■■□□□ 1.67
LIMS2-216ENST00000494613 CFAP43Q8NDM7 1665 aa25.49■■□□□ 1.67
LIMS2-216ENST00000494613 ARHGAP35Q9NRY4 1499 aa25.48■■□□□ 1.67
LIMS2-216ENST00000494613 FMN1Q68DA7 1419 aa25.43■■□□□ 1.66
LIMS2-216ENST00000494613 ABCA9Q8IUA7 1624 aa25.39■■□□□ 1.66
LIMS2-216ENST00000494613 PHLDB1Q86UU1 1377 aa25.39■■□□□ 1.65
LIMS2-216ENST00000494613 RAPGEF3O95398 923 aa25.35■■□□□ 1.65
LIMS2-216ENST00000494613 CDK11AQ9UQ88 783 aaPredicted RBP25.35■■□□□ 1.65
LIMS2-216ENST00000494613 ARAP3Q8WWN8 1544 aa25.35■■□□□ 1.65
LIMS2-216ENST00000494613 CDK13Q14004 1512 aaKnown RBP25.34■■□□□ 1.65
LIMS2-216ENST00000494613 NEO1Q92859 1461 aa25.28■■□□□ 1.64
LIMS2-216ENST00000494613 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.27■■□□□ 1.64
LIMS2-216ENST00000494613 HECW1Q76N89 1606 aa25.23■■□□□ 1.63
LIMS2-216ENST00000494613 CLIP1P30622 1438 aa25.23■■□□□ 1.63
LIMS2-216ENST00000494613 AKNAQ7Z591 1439 aa25.22■■□□□ 1.63
LIMS2-216ENST00000494613 ADGRL1O94910 1474 aa25.21■■□□□ 1.63
LIMS2-216ENST00000494613 CASKIN1Q8WXD9 1431 aa25.2■■□□□ 1.62
LIMS2-216ENST00000494613 FANCAO15360 1455 aa25.19■■□□□ 1.62
LIMS2-216ENST00000494613 PLCH2O75038 1416 aa25.19■■□□□ 1.62
LIMS2-216ENST00000494613 EFCAB2Q5VUJ9 269 aa25.18■■□□□ 1.62
LIMS2-216ENST00000494613 TROQ12816 1431 aaPredicted RBP25.16■■□□□ 1.62
LIMS2-216ENST00000494613 TTC37Q6PGP7 1564 aa25.15■■□□□ 1.62
LIMS2-216ENST00000494613 LOC105371045A0A1W2PR82 267 aa25.15■■□□□ 1.62
LIMS2-216ENST00000494613 DENND4BO75064 1496 aaPredicted RBP25.15■■□□□ 1.62
LIMS2-216ENST00000494613 LRRIQ1Q96JM4 1722 aa25.09■■□□□ 1.61
LIMS2-216ENST00000494613 SCAPERQ9BY12 1400 aa25.09■■□□□ 1.61
LIMS2-216ENST00000494613 CCDC18Q5T9S5 1454 aa25.07■■□□□ 1.6
LIMS2-216ENST00000494613 PCF11O94913 1555 aaKnown RBP25.06■■□□□ 1.6
LIMS2-216ENST00000494613 ARID4BQ4LE39 1312 aaPredicted RBP25.06■■□□□ 1.6
LIMS2-216ENST00000494613 FRMPD1Q5SYB0 1578 aa25.05■■□□□ 1.6
LIMS2-216ENST00000494613 KIF14Q15058 1648 aa25.05■■□□□ 1.6
LIMS2-216ENST00000494613 FYCO1Q9BQS8 1478 aa25.04■■□□□ 1.6
LIMS2-216ENST00000494613 CFAP74Q9C0B2 1584 aa25.04■■□□□ 1.6
LIMS2-216ENST00000494613 AFAP1Q8N556 730 aa25.01■■□□□ 1.59
LIMS2-216ENST00000494613 CEP162Q5TB80 1403 aa25■■□□□ 1.59
LIMS2-216ENST00000494613 RICTORQ6R327 1708 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms