RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 KIAA0586Q9BVV6 1533 aa23.84■■□□□ 1.41
BRCA1-223ENST00000494123 CTTNBP2Q8WZ74 1663 aa23.84■■□□□ 1.41
BRCA1-223ENST00000494123 IQGAP2Q13576 1575 aa23.79■■□□□ 1.4
BRCA1-223ENST00000494123 UBTFP17480 764 aaKnown RBP23.77■■□□□ 1.4
BRCA1-223ENST00000494123 DNAJC5Q9H3Z4 198 aa23.75■■□□□ 1.39
BRCA1-223ENST00000494123 SHROOM2Q13796 1616 aa23.74■■□□□ 1.39
BRCA1-223ENST00000494123 JPH4Q96JJ6 628 aa23.72■■□□□ 1.39
BRCA1-223ENST00000494123 PRG4Q92954 1404 aaPredicted RBP23.67■■□□□ 1.38
BRCA1-223ENST00000494123 ARHGEF11O15085 1522 aa23.66■■□□□ 1.38
BRCA1-223ENST00000494123 UGGT2Q9NYU1 1516 aa23.64■■□□□ 1.38
BRCA1-223ENST00000494123 RIMBP3CA6NJZ7 1639 aa23.63■■□□□ 1.37
BRCA1-223ENST00000494123 RIMBP3BA6NNM3 1639 aa23.63■■□□□ 1.37
BRCA1-223ENST00000494123 RIMBP3Q9UFD9 1639 aa23.63■■□□□ 1.37
BRCA1-223ENST00000494123 RANGAP1P46060 587 aaPredicted RBP23.61■■□□□ 1.37
BRCA1-223ENST00000494123 ERCC6L2Q5T890 1561 aa23.6■■□□□ 1.37
BRCA1-223ENST00000494123 CARMIL2Q6F5E8 1435 aa23.6■■□□□ 1.37
BRCA1-223ENST00000494123 LOC105371045A0A1W2PR82 267 aa23.6■■□□□ 1.37
BRCA1-223ENST00000494123 TNIKQ9UKE5 1360 aa23.59■■□□□ 1.37
BRCA1-223ENST00000494123 DISP1Q96F81 1524 aa23.56■■□□□ 1.36
BRCA1-223ENST00000494123 KIAA0556O60303 1618 aa23.55■■□□□ 1.36
BRCA1-223ENST00000494123 SAMD9Q5K651 1589 aa23.51■■□□□ 1.35
BRCA1-223ENST00000494123 EFCAB5A4FU69 1503 aa23.5■■□□□ 1.35
BRCA1-223ENST00000494123 ARAP1Q96P48 1450 aa23.49■■□□□ 1.35
BRCA1-223ENST00000494123 P3H3Q8IVL6 736 aa23.47■■□□□ 1.35
BRCA1-223ENST00000494123 TTBK1Q5TCY1 1321 aaPredicted RBP23.47■■□□□ 1.35
BRCA1-223ENST00000494123 CYB5RLQ6IPT4 315 aa23.44■■□□□ 1.34
BRCA1-223ENST00000494123 PTPRGP23470 1445 aa23.43■■□□□ 1.34
BRCA1-223ENST00000494123 CLIP1P30622 1438 aa23.43■■□□□ 1.34
BRCA1-223ENST00000494123 CEP162Q5TB80 1403 aa23.41■■□□□ 1.34
BRCA1-223ENST00000494123 ARHGAP35Q9NRY4 1499 aa23.41■■□□□ 1.34
BRCA1-223ENST00000494123 FHOD3Q2V2M9 1422 aa23.4■■□□□ 1.34
BRCA1-223ENST00000494123 UACAQ9BZF9 1416 aa23.29■■□□□ 1.32
BRCA1-223ENST00000494123 FMN1Q68DA7 1419 aa23.28■■□□□ 1.32
BRCA1-223ENST00000494123 PLB1Q6P1J6 1458 aa23.26■■□□□ 1.31
BRCA1-223ENST00000494123 ADCY10Q96PN6 1610 aa23.25■■□□□ 1.31
BRCA1-223ENST00000494123 ABCA8O94911 1581 aa23.25■■□□□ 1.31
BRCA1-223ENST00000494123 ABCC2Q92887 1545 aa23.24■■□□□ 1.31
BRCA1-223ENST00000494123 RAPGEF6Q8TEU7 1601 aa23.23■■□□□ 1.31
BRCA1-223ENST00000494123 UHRF1BP1LA0JNW5 1464 aa23.22■■□□□ 1.31
BRCA1-223ENST00000494123 NPM1P06748 294 aaKnown RBP eCLIP23.18■■□□□ 1.3
BRCA1-223ENST00000494123 ATP1B4Q9UN42 357 aaPredicted RBP23.15■■□□□ 1.3
BRCA1-223ENST00000494123 HECW1Q76N89 1606 aa23.14■■□□□ 1.3
BRCA1-223ENST00000494123 PCF11O94913 1555 aaKnown RBP23.14■■□□□ 1.29
BRCA1-223ENST00000494123 CASKIN1Q8WXD9 1431 aa23.12■■□□□ 1.29
BRCA1-223ENST00000494123 ARID3CA6NKF2 412 aa23.11■■□□□ 1.29
BRCA1-223ENST00000494123 NUP153P49790 1475 aaKnown RBP23.11■■□□□ 1.29
BRCA1-223ENST00000494123 KDM5BQ9UGL1 1544 aa23.11■■□□□ 1.29
BRCA1-223ENST00000494123 ZCCHC11Q5TAX3 1644 aaKnown RBP23.1■■□□□ 1.29
BRCA1-223ENST00000494123 FYCO1Q9BQS8 1478 aa23.1■■□□□ 1.29
BRCA1-223ENST00000494123 VPS8Q8N3P4 1428 aa23.1■■□□□ 1.29
BRCA1-223ENST00000494123 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.07■■□□□ 1.28
BRCA1-223ENST00000494123 HNRNPUL2Q1KMD3 747 aaKnown RBP23.07■■□□□ 1.28
BRCA1-223ENST00000494123 ATP10BO94823 1461 aa23.05■■□□□ 1.28
BRCA1-223ENST00000494123 EPRSP07814 1512 aaKnown RBP23.03■■□□□ 1.28
BRCA1-223ENST00000494123 MAPKBP1O60336 1514 aa23.03■■□□□ 1.28
BRCA1-223ENST00000494123 CDK13Q14004 1512 aaKnown RBP23.02■■□□□ 1.28
BRCA1-223ENST00000494123 LRRIQ1Q96JM4 1722 aa23.02■■□□□ 1.28
BRCA1-223ENST00000494123 CCDC18Q5T9S5 1454 aa23.01■■□□□ 1.27
BRCA1-223ENST00000494123 ASXL2Q76L83 1435 aa22.98■■□□□ 1.27
BRCA1-223ENST00000494123 WDR7Q9Y4E6 1490 aa22.94■■□□□ 1.26
BRCA1-223ENST00000494123 CDK11AQ9UQ88 783 aaPredicted RBP22.93■■□□□ 1.26
BRCA1-223ENST00000494123 PLEKHD1A6NEE1 506 aa22.93■■□□□ 1.26
BRCA1-223ENST00000494123 APLP2Q06481 763 aa22.9■■□□□ 1.26
BRCA1-223ENST00000494123 CFAP43Q8NDM7 1665 aa22.89■■□□□ 1.26
BRCA1-223ENST00000494123 TIAM1Q13009 1591 aa22.87■■□□□ 1.25
BRCA1-223ENST00000494123 KCNH8Q96L42 1107 aa22.87■■□□□ 1.25
BRCA1-223ENST00000494123 TRHP20396 242 aaPredicted RBP22.86■■□□□ 1.25
BRCA1-223ENST00000494123 ABCC10Q5T3U5 1492 aa22.86■■□□□ 1.25
BRCA1-223ENST00000494123 DIP2BQ9P265 1576 aa22.85■■□□□ 1.25
BRCA1-223ENST00000494123 TROQ12816 1431 aaPredicted RBP22.83■■□□□ 1.25
BRCA1-223ENST00000494123 MAP3K1Q13233 1512 aa22.83■■□□□ 1.25
BRCA1-223ENST00000494123 FAM69CQ0P6D2 419 aa22.82■■□□□ 1.24
BRCA1-223ENST00000494123 KIF13AQ9H1H9 1805 aa22.82■■□□□ 1.24
BRCA1-223ENST00000494123 MTUS2Q5JR59 1369 aa22.82■■□□□ 1.24
BRCA1-223ENST00000494123 MAGI3Q5TCQ9 1506 aa22.81■■□□□ 1.24
BRCA1-223ENST00000494123 KIF14Q15058 1648 aa22.79■■□□□ 1.24
BRCA1-223ENST00000494123 GLI2P10070 1586 aa22.79■■□□□ 1.24
BRCA1-223ENST00000494123 EHBP1L1Q8N3D4 1523 aa22.78■■□□□ 1.24
BRCA1-223ENST00000494123 LRRC9Q6ZRR7 1453 aa22.75■■□□□ 1.23
BRCA1-223ENST00000494123 ABCA9Q8IUA7 1624 aa22.73■■□□□ 1.23
BRCA1-223ENST00000494123 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.72■■□□□ 1.23
BRCA1-223ENST00000494123 MAP3K4Q9Y6R4 1608 aa22.72■■□□□ 1.23
BRCA1-223ENST00000494123 TTC37Q6PGP7 1564 aa22.71■■□□□ 1.23
BRCA1-223ENST00000494123 KANK4Q5T7N3 995 aaPredicted RBP22.71■■□□□ 1.23
BRCA1-223ENST00000494123 SUPT6HQ7KZ85 1726 aaKnown RBP22.7■■□□□ 1.23
BRCA1-223ENST00000494123 TSPOAP1O95153 1857 aa22.69■■□□□ 1.22
BRCA1-223ENST00000494123 CD109Q6YHK3 1445 aa22.68■■□□□ 1.22
BRCA1-223ENST00000494123 MYO5CQ9NQX4 1742 aa22.65■■□□□ 1.22
BRCA1-223ENST00000494123 NCOA2Q15596 1464 aa22.63■■□□□ 1.21
BRCA1-223ENST00000494123 CCNB3Q8WWL7 1395 aa22.61■■□□□ 1.21
BRCA1-223ENST00000494123 PPRC1Q5VV67 1664 aaKnown RBP22.61■■□□□ 1.21
BRCA1-223ENST00000494123 TEX14Q8IWB6 1497 aa22.6■■□□□ 1.21
BRCA1-223ENST00000494123 PPARGC1BQ86YN6 1023 aaKnown RBP22.59■■□□□ 1.21
BRCA1-223ENST00000494123 CDC42BPAQ5VT25 1732 aa22.59■■□□□ 1.21
BRCA1-223ENST00000494123 PLCH2O75038 1416 aa22.58■■□□□ 1.21
BRCA1-223ENST00000494123 PREX2Q70Z35 1606 aa22.58■■□□□ 1.21
BRCA1-223ENST00000494123 ITSN2Q9NZM3 1697 aa22.58■■□□□ 1.2
BRCA1-223ENST00000494123 ARHGAP5Q13017 1502 aa22.57■■□□□ 1.2
BRCA1-223ENST00000494123 CDC42BPBQ9Y5S2 1711 aa22.55■■□□□ 1.2
BRCA1-223ENST00000494123 ARAP3Q8WWN8 1544 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms