RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 EIF4G3O43432 1585 aaKnown RBP22.01■■□□□ 1.11
UPF3A-210ENST00000493727 ABCC8Q09428 1581 aa21.96■■□□□ 1.11
UPF3A-210ENST00000493727 DNMBPQ6XZF7 1577 aa21.96■■□□□ 1.11
UPF3A-210ENST00000493727 TARBP1Q13395 1621 aaKnown RBP21.92■■□□□ 1.1
UPF3A-210ENST00000493727 CHD1O14646 1710 aa21.91■■□□□ 1.1
UPF3A-210ENST00000493727 DSG3P32926 999 aa21.9■■□□□ 1.1
UPF3A-210ENST00000493727 AQRO60306 1485 aaKnown RBP eCLIP21.83■■□□□ 1.093e-6■□□□□ 10.3
UPF3A-210ENST00000493727 POLA1P09884 1462 aaPredicted RBP21.82■■□□□ 1.08
UPF3A-210ENST00000493727 ARAP1Q96P48 1450 aa21.8■■□□□ 1.08
UPF3A-210ENST00000493727 ABCB7O75027 752 aa21.79■■□□□ 1.08
UPF3A-210ENST00000493727 POLA2Q14181 598 aa21.76■■□□□ 1.07
UPF3A-210ENST00000493727 CYB5RLQ6IPT4 315 aa21.75■■□□□ 1.07
UPF3A-210ENST00000493727 RAD54L2Q9Y4B4 1467 aa21.71■■□□□ 1.07
UPF3A-210ENST00000493727 WDR97A6NE52 1622 aa21.69■■□□□ 1.06
UPF3A-210ENST00000493727 CLASP1Q7Z460 1538 aa21.66■■□□□ 1.06
UPF3A-210ENST00000493727 SOGA1O94964 1423 aa21.64■■□□□ 1.06
UPF3A-210ENST00000493727 SNAPC4Q5SXM2 1469 aa21.64■■□□□ 1.05
UPF3A-210ENST00000493727 TDRD9Q8NDG6 1382 aaKnown RBP21.63■■□□□ 1.05
UPF3A-210ENST00000493727 FBLN2P98095 1184 aa21.63■■□□□ 1.05
UPF3A-210ENST00000493727 FGD5Q6ZNL6 1462 aa21.63■■□□□ 1.05
UPF3A-210ENST00000493727 CUX1P39880 1505 aa21.59■■□□□ 1.05
UPF3A-210ENST00000493727 MAGI1Q96QZ7 1491 aaPredicted RBP21.58■■□□□ 1.05
UPF3A-210ENST00000493727 SYNJ1O43426 1573 aa21.57■■□□□ 1.04
UPF3A-210ENST00000493727 GRIN2BQ13224 1484 aa21.52■■□□□ 1.04
UPF3A-210ENST00000493727 SYNJ2O15056 1496 aa21.51■■□□□ 1.03
UPF3A-210ENST00000493727 SUPT5HO00267 1087 aaKnown RBP21.49■■□□□ 1.03
UPF3A-210ENST00000493727 PBRM1Q86U86 1689 aa21.49■■□□□ 1.03
UPF3A-210ENST00000493727 CHMP7Q8WUX9 453 aaPredicted RBP21.46■■□□□ 1.03
UPF3A-210ENST00000493727 ABCA5Q8WWZ7 1642 aa21.42■■□□□ 1.02
UPF3A-210ENST00000493727 GAPVD1Q14C86 1478 aa21.41■■□□□ 1.02
UPF3A-210ENST00000493727 ABCA10Q8WWZ4 1543 aa21.39■■□□□ 1.01
UPF3A-210ENST00000493727 ZBTB12Q9Y330 459 aaPredicted RBP21.36■■□□□ 1.01
UPF3A-210ENST00000493727 MKRN4PQ13434 485 aaPredicted RBP21.34■■□□□ 1.01
UPF3A-210ENST00000493727 ERCC6L2Q5T890 1561 aa21.27■■□□□ 1
UPF3A-210ENST00000493727 GRIN2AQ12879 1464 aa21.27■■□□□ 1
UPF3A-210ENST00000493727 ADAMTS12P58397 1594 aa21.27■□□□□ 0.99
UPF3A-210ENST00000493727 CEP170Q5SW79 1584 aa21.24■□□□□ 0.99
UPF3A-210ENST00000493727 NUP160Q12769 1436 aa21.24■□□□□ 0.99
UPF3A-210ENST00000493727 SHROOM2Q13796 1616 aa21.21■□□□□ 0.99
UPF3A-210ENST00000493727 BIVM-ERCC5R4GMW8 1640 aa21.2■□□□□ 0.98
UPF3A-210ENST00000493727 WRNQ14191 1432 aaPredicted RBP eCLIP21.19■□□□□ 0.98
UPF3A-210ENST00000493727 TOP2BQ02880 1626 aa21.18■□□□□ 0.98
UPF3A-210ENST00000493727 FHAD1B1AJZ9 1412 aa21.12■□□□□ 0.97
UPF3A-210ENST00000493727 ERICH3Q5RHP9 1530 aa21.11■□□□□ 0.97
UPF3A-210ENST00000493727 KIF13AQ9H1H9 1805 aa21.08■□□□□ 0.97
UPF3A-210ENST00000493727 RUSC2Q8N2Y8 1516 aa20.99■□□□□ 0.95
UPF3A-210ENST00000493727 PRG4Q92954 1404 aaPredicted RBP20.98■□□□□ 0.95
UPF3A-210ENST00000493727 JPH4Q96JJ6 628 aa20.9■□□□□ 0.94
UPF3A-210ENST00000493727 MAPKBP1O60336 1514 aa20.89■□□□□ 0.94
UPF3A-210ENST00000493727 ABCC10Q5T3U5 1492 aa20.88■□□□□ 0.93
UPF3A-210ENST00000493727 ADCY10Q96PN6 1610 aa20.86■□□□□ 0.93
UPF3A-210ENST00000493727 DIP2BQ9P265 1576 aa20.86■□□□□ 0.93
UPF3A-210ENST00000493727 SPDYE2BA6NHP3 402 aa20.82■□□□□ 0.92
UPF3A-210ENST00000493727 SPDYE6P0CI01 402 aa20.82■□□□□ 0.92
UPF3A-210ENST00000493727 SPDYE2Q495Y8 402 aa20.82■□□□□ 0.92
UPF3A-210ENST00000493727 RBM42Q9BTD8 480 aaKnown RBP20.81■□□□□ 0.92
UPF3A-210ENST00000493727 SPDYE4A6NLX3 237 aa20.78■□□□□ 0.92
UPF3A-210ENST00000493727 KIAA0586Q9BVV6 1533 aa20.78■□□□□ 0.92
UPF3A-210ENST00000493727 FAM69CQ0P6D2 419 aa20.77■□□□□ 0.92
UPF3A-210ENST00000493727 FKBP8Q14318 412 aa20.77■□□□□ 0.92
UPF3A-210ENST00000493727 CUL7Q14999 1698 aa20.76■□□□□ 0.91
UPF3A-210ENST00000493727 ZNF692Q9BU19 519 aaPredicted RBP20.72■□□□□ 0.91
UPF3A-210ENST00000493727 IGF1RP08069 1367 aa20.72■□□□□ 0.91
UPF3A-210ENST00000493727 KDM6BO15054 1643 aa20.71■□□□□ 0.91
UPF3A-210ENST00000493727 NPM1P06748 294 aaKnown RBP eCLIP20.7■□□□□ 0.9
UPF3A-210ENST00000493727 TSPOAP1O95153 1857 aa20.69■□□□□ 0.9
UPF3A-210ENST00000493727 SSUH2Q9Y2M2 353 aa20.69■□□□□ 0.9
UPF3A-210ENST00000493727 KIF27Q86VH2 1401 aa20.68■□□□□ 0.9
UPF3A-210ENST00000493727 KDM4FA0A1W2PPD8 638 aa20.6■□□□□ 0.89
UPF3A-210ENST00000493727 ABCC2Q92887 1545 aa20.59■□□□□ 0.89
UPF3A-210ENST00000493727 PPRC1Q5VV67 1664 aaKnown RBP20.59■□□□□ 0.89
UPF3A-210ENST00000493727 PTPRGP23470 1445 aa20.59■□□□□ 0.89
UPF3A-210ENST00000493727 AKT1S1Q96B36 256 aa20.58■□□□□ 0.89
UPF3A-210ENST00000493727 CARMIL1Q5VZK9 1371 aa20.56■□□□□ 0.88
UPF3A-210ENST00000493727 GLI2P10070 1586 aa20.55■□□□□ 0.88
UPF3A-210ENST00000493727 IQGAP2Q13576 1575 aa20.55■□□□□ 0.88
UPF3A-210ENST00000493727 TNIKQ9UKE5 1360 aa20.55■□□□□ 0.88
UPF3A-210ENST00000493727 UHRF1BP1LA0JNW5 1464 aa20.53■□□□□ 0.88
UPF3A-210ENST00000493727 CARMIL2Q6F5E8 1435 aa20.53■□□□□ 0.88
UPF3A-210ENST00000493727 ASXL2Q76L83 1435 aa20.53■□□□□ 0.88
UPF3A-210ENST00000493727 PROM2Q8N271 834 aa20.52■□□□□ 0.88
UPF3A-210ENST00000493727 PLB1Q6P1J6 1458 aa20.51■□□□□ 0.87
UPF3A-210ENST00000493727 DISP1Q96F81 1524 aa20.5■□□□□ 0.87
UPF3A-210ENST00000493727 UACAQ9BZF9 1416 aa20.46■□□□□ 0.87
UPF3A-210ENST00000493727 MAP3K4Q9Y6R4 1608 aa20.45■□□□□ 0.86
UPF3A-210ENST00000493727 KDM5BQ9UGL1 1544 aa20.44■□□□□ 0.86
UPF3A-210ENST00000493727 UGGT2Q9NYU1 1516 aa20.43■□□□□ 0.86
UPF3A-210ENST00000493727 TTBK1Q5TCY1 1321 aaPredicted RBP20.43■□□□□ 0.86
UPF3A-210ENST00000493727 EPRSP07814 1512 aaKnown RBP20.43■□□□□ 0.86
UPF3A-210ENST00000493727 COL17A1Q9UMD9 1497 aaPredicted RBP20.42■□□□□ 0.86
UPF3A-210ENST00000493727 ZCCHC11Q5TAX3 1644 aaKnown RBP20.41■□□□□ 0.86
UPF3A-210ENST00000493727 KIAA0556O60303 1618 aa20.4■□□□□ 0.86
UPF3A-210ENST00000493727 ADGRL1O94910 1474 aa20.4■□□□□ 0.86
UPF3A-210ENST00000493727 REM2Q8IYK8 340 aaPredicted RBP20.4■□□□□ 0.86
UPF3A-210ENST00000493727 RAPGEF2Q9Y4G8 1499 aa20.36■□□□□ 0.85
UPF3A-210ENST00000493727 TEX14Q8IWB6 1497 aa20.34■□□□□ 0.85
UPF3A-210ENST00000493727 WDR7Q9Y4E6 1490 aa20.3■□□□□ 0.84
UPF3A-210ENST00000493727 CTTNBP2Q8WZ74 1663 aa20.29■□□□□ 0.84
UPF3A-210ENST00000493727 ILDR1Q86SU0 546 aaPredicted RBP20.25■□□□□ 0.83
UPF3A-210ENST00000493727 CFAP43Q8NDM7 1665 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms