RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 CUX2O14529 1486 aa16.35■□□□□ 0.21
HDAC4-210ENST00000493582 MYT1LQ9UL68 1186 aa16.35■□□□□ 0.21
HDAC4-210ENST00000493582 NBR1Q14596 966 aa16.33■□□□□ 0.2
HDAC4-210ENST00000493582 HNRNPUQ00839 825 aaKnown RBP eCLIP16.32■□□□□ 0.2
HDAC4-210ENST00000493582 ARAP1Q96P48 1450 aa16.31■□□□□ 0.2
HDAC4-210ENST00000493582 PAK3O75914 559 aaPredicted RBP16.24■□□□□ 0.19
HDAC4-210ENST00000493582 B4GALNT3Q6L9W6 998 aa16.23■□□□□ 0.19
HDAC4-210ENST00000493582 PPP4R2Q9NY27 417 aa16.23■□□□□ 0.19
HDAC4-210ENST00000493582 NOP58Q9Y2X3 529 aaKnown RBP16.22■□□□□ 0.19
HDAC4-210ENST00000493582 SALL2Q9Y467 1007 aaPredicted RBP16.22■□□□□ 0.19
HDAC4-210ENST00000493582 SETD5Q9C0A6 1442 aa16.21■□□□□ 0.19
HDAC4-210ENST00000493582 PEG3Q9GZU2 1588 aa16.19■□□□□ 0.18
HDAC4-210ENST00000493582 FAM50AQ14320 339 aaKnown RBP16.16■□□□□ 0.18
HDAC4-210ENST00000493582 TIMELESSQ9UNS1 1208 aa16.15■□□□□ 0.18
HDAC4-210ENST00000493582 ERICH6BQ5W0A0 696 aa16.14■□□□□ 0.17
HDAC4-210ENST00000493582 CCDC136Q96JN2 1154 aa16.14■□□□□ 0.17
HDAC4-210ENST00000493582 PRXQ9BXM0 1461 aa16.13■□□□□ 0.17
HDAC4-210ENST00000493582 IL27Q8NEV9 243 aa16.12■□□□□ 0.17
HDAC4-210ENST00000493582 RTN4Q9NQC3 1192 aaKnown RBP16.12■□□□□ 0.17
HDAC4-210ENST00000493582 TOP2BQ02880 1626 aa16.09■□□□□ 0.17
HDAC4-210ENST00000493582 CCDC184Q52MB2 194 aa16.09■□□□□ 0.17
HDAC4-210ENST00000493582 ERICH3Q5RHP9 1530 aa16.08■□□□□ 0.17
HDAC4-210ENST00000493582 RTL5Q5HYW3 569 aaPredicted RBP16.08■□□□□ 0.16
HDAC4-210ENST00000493582 BICRAQ9NZM4 1560 aa16.07■□□□□ 0.16
HDAC4-210ENST00000493582 ARHGAP35Q9NRY4 1499 aa16.07■□□□□ 0.16
HDAC4-210ENST00000493582 PHLDB1Q86UU1 1377 aa16.05■□□□□ 0.16
HDAC4-210ENST00000493582 TONSLQ96HA7 1378 aa16.05■□□□□ 0.16
HDAC4-210ENST00000493582 FAM9BQ8IZU0 186 aa16.05■□□□□ 0.16
HDAC4-210ENST00000493582 BIVM-ERCC5R4GMW8 1640 aa16.03■□□□□ 0.16
HDAC4-210ENST00000493582 PABPN1Q86U42 306 aaKnown RBP eCLIP16.03■□□□□ 0.16
HDAC4-210ENST00000493582 IPO9Q96P70 1041 aaKnown RBP16.03■□□□□ 0.16
HDAC4-210ENST00000493582 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.03■□□□□ 0.16
HDAC4-210ENST00000493582 ZBTB47Q9UFB7 747 aaPredicted RBP16.01■□□□□ 0.15
HDAC4-210ENST00000493582 ANP32AP39687 249 aaKnown RBP16.01■□□□□ 0.15
HDAC4-210ENST00000493582 ATAD2BQ9ULI0 1458 aa16■□□□□ 0.15
HDAC4-210ENST00000493582 WASHC2AQ641Q2 1341 aa15.99■□□□□ 0.15
HDAC4-210ENST00000493582 ATP1B4Q9UN42 357 aaPredicted RBP15.97■□□□□ 0.15
HDAC4-210ENST00000493582 TIAM1Q13009 1591 aa15.95■□□□□ 0.14
HDAC4-210ENST00000493582 LRRC9Q6ZRR7 1453 aa15.95■□□□□ 0.14
HDAC4-210ENST00000493582 MRS2Q9HD23 443 aa15.94■□□□□ 0.14
HDAC4-210ENST00000493582 HSPA5P11021 654 aaKnown RBP15.93■□□□□ 0.14
HDAC4-210ENST00000493582 ZBED9Q6R2W3 1325 aa15.92■□□□□ 0.14
HDAC4-210ENST00000493582 KIF27Q86VH2 1401 aa15.9■□□□□ 0.14
HDAC4-210ENST00000493582 PRKRIP1Q9H875 184 aaPredicted RBP15.9■□□□□ 0.14
HDAC4-210ENST00000493582 P3H3Q8IVL6 736 aa15.89■□□□□ 0.13
HDAC4-210ENST00000493582 NPM2Q86SE8 214 aaKnown RBP15.89■□□□□ 0.13
HDAC4-210ENST00000493582 LAS1LQ9Y4W2 734 aaKnown RBP15.89■□□□□ 0.13
HDAC4-210ENST00000493582 AKNAQ7Z591 1439 aa15.88■□□□□ 0.13
HDAC4-210ENST00000493582 FHAD1B1AJZ9 1412 aa15.88■□□□□ 0.13
HDAC4-210ENST00000493582 SENP3-EIF4A1A0A087X0R7 540 aa15.87■□□□□ 0.13
HDAC4-210ENST00000493582 NEFMP07197 916 aa15.87■□□□□ 0.13
HDAC4-210ENST00000493582 C11orf95C9JLR9 678 aaPredicted RBP15.86■□□□□ 0.13
HDAC4-210ENST00000493582 MAP3K1Q13233 1512 aa15.85■□□□□ 0.13
HDAC4-210ENST00000493582 CUX1P39880 1505 aa15.84■□□□□ 0.13
HDAC4-210ENST00000493582 EIF4G2P78344 907 aaKnown RBP eCLIP15.83■□□□□ 0.131e-6■■■■■ 35.8
HDAC4-210ENST00000493582 CNGB1Q14028 1251 aaPredicted RBP15.83■□□□□ 0.13
HDAC4-210ENST00000493582 UBE2Q2Q8WVN8 375 aa15.83■□□□□ 0.12
HDAC4-210ENST00000493582 CNTLNQ9NXG0 1405 aa15.82■□□□□ 0.12
HDAC4-210ENST00000493582 CCDC18Q5T9S5 1454 aa15.81■□□□□ 0.12
HDAC4-210ENST00000493582 KDM5BQ9UGL1 1544 aa15.79■□□□□ 0.12
HDAC4-210ENST00000493582 BRPF3Q9ULD4 1205 aa15.79■□□□□ 0.12
HDAC4-210ENST00000493582 UACAQ9BZF9 1416 aa15.79■□□□□ 0.12
HDAC4-210ENST00000493582 EIF5BO60841 1220 aaKnown RBP15.78■□□□□ 0.12
HDAC4-210ENST00000493582 AQRO60306 1485 aaKnown RBP eCLIP15.77■□□□□ 0.126e-9■■■■■ 37.6
HDAC4-210ENST00000493582 NUDCQ9Y266 331 aa15.77■□□□□ 0.12
HDAC4-210ENST00000493582 NCOA2Q15596 1464 aa15.77■□□□□ 0.11
HDAC4-210ENST00000493582 SMG6Q86US8 1419 aaKnown RBP15.76■□□□□ 0.11
HDAC4-210ENST00000493582 PTPRKQ15262 1439 aa15.76■□□□□ 0.11
HDAC4-210ENST00000493582 WASHC2CQ9Y4E1 1318 aa15.75■□□□□ 0.11
HDAC4-210ENST00000493582 USP35Q9P2H5 1018 aa15.75■□□□□ 0.11
HDAC4-210ENST00000493582 CCDC7Q96M83 1385 aa15.75■□□□□ 0.11
HDAC4-210ENST00000493582 RNF123Q5XPI4 1314 aa15.75■□□□□ 0.11
HDAC4-210ENST00000493582 NCAPD3P42695 1498 aa15.74■□□□□ 0.11
HDAC4-210ENST00000493582 IGF1RP08069 1367 aa15.74■□□□□ 0.11
HDAC4-210ENST00000493582 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.71■□□□□ 0.114e-8■■■■■ 340.8
HDAC4-210ENST00000493582 HFM1A2PYH4 1435 aa15.71■□□□□ 0.11
HDAC4-210ENST00000493582 PDE4AP27815 886 aa15.71■□□□□ 0.11
HDAC4-210ENST00000493582 CFAP43Q8NDM7 1665 aa15.7■□□□□ 0.1
HDAC4-210ENST00000493582 PCF11O94913 1555 aaKnown RBP15.7■□□□□ 0.1
HDAC4-210ENST00000493582 FGD6Q6ZV73 1430 aa15.7■□□□□ 0.1
HDAC4-210ENST00000493582 L3MBTL2Q969R5 705 aa15.7■□□□□ 0.1
HDAC4-210ENST00000493582 NCOA1Q15788 1441 aa15.69■□□□□ 0.1
HDAC4-210ENST00000493582 CARMIL1Q5VZK9 1371 aa15.68■□□□□ 0.1
HDAC4-210ENST00000493582 NAIPQ13075 1403 aa15.68■□□□□ 0.1
HDAC4-210ENST00000493582 PPM1GO15355 546 aaPredicted RBP15.68■□□□□ 0.1
HDAC4-210ENST00000493582 GSE1Q14687 1217 aa15.67■□□□□ 0.1
HDAC4-210ENST00000493582 RRP7BPQ9NSQ0 103 aa15.67■□□□□ 0.1
HDAC4-210ENST00000493582 KIF7Q2M1P5 1343 aa15.67■□□□□ 0.1
HDAC4-210ENST00000493582 PTPN23Q9H3S7 1636 aa15.67■□□□□ 0.1
HDAC4-210ENST00000493582 FHOD3Q2V2M9 1422 aa15.66■□□□□ 0.1
HDAC4-210ENST00000493582 FOXD1Q16676 465 aa15.66■□□□□ 0.1
HDAC4-210ENST00000493582 EXOC6Q8TAG9 804 aa15.66■□□□□ 0.1
HDAC4-210ENST00000493582 BACH2Q9BYV9 841 aa15.66■□□□□ 0.1
HDAC4-210ENST00000493582 TCERG1O14776 1098 aaKnown RBP15.65■□□□□ 0.1
HDAC4-210ENST00000493582 CHIC2Q9UKJ5 165 aa15.65■□□□□ 0.1
HDAC4-210ENST00000493582 POLR3GLQ9BT43 218 aa15.64■□□□□ 0.09
HDAC4-210ENST00000493582 FMN1Q68DA7 1419 aa15.63■□□□□ 0.09
HDAC4-210ENST00000493582 NBPF8Q3BBV2 869 aa15.63■□□□□ 0.09
HDAC4-210ENST00000493582 HMGXB3Q12766 1538 aa15.62■□□□□ 0.09
HDAC4-210ENST00000493582 SLC24A1O60721 1099 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms