RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 FKBP8Q14318 412 aa6.72□□□□□ -1.33
BRCA1-220ENST00000492859 PDIA4P13667 645 aaKnown RBP6.71□□□□□ -1.34
BRCA1-220ENST00000492859 ZNF692Q9BU19 519 aaPredicted RBP6.71□□□□□ -1.34
BRCA1-220ENST00000492859 SSUH2Q9Y2M2 353 aa6.7□□□□□ -1.34
BRCA1-220ENST00000492859 PABPN1Q86U42 306 aaKnown RBP eCLIP6.65□□□□□ -1.34
BRCA1-220ENST00000492859 PIP4P2Q8N4L2 257 aa6.65□□□□□ -1.34
BRCA1-220ENST00000492859 CHMP4AQ9BY43 222 aa6.65□□□□□ -1.34
BRCA1-220ENST00000492859 UBE2Q2Q8WVN8 375 aa6.65□□□□□ -1.35
BRCA1-220ENST00000492859 CLEC11AQ9Y240 323 aa6.64□□□□□ -1.35
BRCA1-220ENST00000492859 LHX8Q68G74 356 aa6.62□□□□□ -1.35
BRCA1-220ENST00000492859 FAM9AQ8IZU1 332 aaPredicted RBP6.61□□□□□ -1.35
BRCA1-220ENST00000492859 FXR2P51116 673 aaKnown RBP eCLIP6.61□□□□□ -1.35
BRCA1-220ENST00000492859 SHROOM4Q9ULL8 1493 aa6.61□□□□□ -1.35
BRCA1-220ENST00000492859 CDK11BP21127 795 aaKnown RBP6.6□□□□□ -1.35
BRCA1-220ENST00000492859 CDK11AQ9UQ88 783 aaPredicted RBP6.6□□□□□ -1.35
BRCA1-220ENST00000492859 SPDYE4A6NLX3 237 aa6.59□□□□□ -1.35
BRCA1-220ENST00000492859 CHADLQ6NUI6 762 aa6.57□□□□□ -1.36
BRCA1-220ENST00000492859 SPDYE1Q8NFV5 336 aaPredicted RBP6.57□□□□□ -1.36
BRCA1-220ENST00000492859 IGSF3O75054 1194 aa6.56□□□□□ -1.36
BRCA1-220ENST00000492859 BRD2P25440 801 aaKnown RBP6.55□□□□□ -1.36
BRCA1-220ENST00000492859 EVX2Q03828 476 aa6.54□□□□□ -1.36
BRCA1-220ENST00000492859 PDE4CQ08493 712 aa6.54□□□□□ -1.36
BRCA1-220ENST00000492859 PRKAR2AP13861 404 aaKnown RBP6.53□□□□□ -1.36
BRCA1-220ENST00000492859 HAX1O00165 279 aa6.52□□□□□ -1.36
BRCA1-220ENST00000492859 HMGB1P09429 215 aaKnown RBP6.52□□□□□ -1.37
BRCA1-220ENST00000492859 HSP90B1P14625 803 aaKnown RBP6.52□□□□□ -1.37
BRCA1-220ENST00000492859 DHX37Q8IY37 1157 aaKnown RBP6.52□□□□□ -1.37
BRCA1-220ENST00000492859 CCDC9Q9Y3X0 531 aaKnown RBP6.51□□□□□ -1.37
BRCA1-220ENST00000492859 PRR29P0C7W0 189 aa6.5□□□□□ -1.37
BRCA1-220ENST00000492859 TAF7LQ5H9L4 462 aa6.49□□□□□ -1.37
BRCA1-220ENST00000492859 NBR1Q14596 966 aa6.48□□□□□ -1.37
BRCA1-220ENST00000492859 NEFLP07196 543 aa6.45□□□□□ -1.38
BRCA1-220ENST00000492859 PROM2Q8N271 834 aa6.45□□□□□ -1.38
BRCA1-220ENST00000492859 PUS7Q96PZ0 661 aaKnown RBP6.45□□□□□ -1.38
BRCA1-220ENST00000492859 PAXIP1Q6ZW49 1069 aaPredicted RBP6.44□□□□□ -1.38
BRCA1-220ENST00000492859 CREBZFQ9NS37 354 aa6.44□□□□□ -1.38
BRCA1-220ENST00000492859 PCDH10Q9P2E7 1040 aa6.44□□□□□ -1.38
BRCA1-220ENST00000492859 TSHZ2Q9NRE2 1034 aa6.43□□□□□ -1.38
BRCA1-220ENST00000492859 CFAP44Q96MT7 982 aa6.41□□□□□ -1.38
BRCA1-220ENST00000492859 FARP1Q9Y4F1 1045 aaPredicted RBP6.4□□□□□ -1.38
BRCA1-220ENST00000492859 C19orf67A6NJJ6 358 aa6.4□□□□□ -1.39
BRCA1-220ENST00000492859 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.4□□□□□ -1.39
BRCA1-220ENST00000492859 ZBTB7CA1YPR0 619 aa6.39□□□□□ -1.39
BRCA1-220ENST00000492859 PKNOX2Q96KN3 472 aa6.39□□□□□ -1.39
BRCA1-220ENST00000492859 BBXQ8WY36 941 aaPredicted RBP6.38□□□□□ -1.39
BRCA1-220ENST00000492859 NECTIN2Q92692 538 aa6.38□□□□□ -1.39
BRCA1-220ENST00000492859 MNX1P50219 401 aaPredicted RBP6.36□□□□□ -1.39
BRCA1-220ENST00000492859 STAG3Q9UJ98 1225 aa6.36□□□□□ -1.39
BRCA1-220ENST00000492859 BCL11BQ9C0K0 894 aaPredicted RBP6.35□□□□□ -1.39
BRCA1-220ENST00000492859 ARID3AQ99856 593 aa6.34□□□□□ -1.39
BRCA1-220ENST00000492859 NPM1P06748 294 aaKnown RBP eCLIP6.33□□□□□ -1.4
BRCA1-220ENST00000492859 CD44P16070 742 aaKnown RBP6.33□□□□□ -1.4
BRCA1-220ENST00000492859 DNAJC5Q9H3Z4 198 aa6.33□□□□□ -1.4
BRCA1-220ENST00000492859 POLR3GLQ9BT43 218 aa6.31□□□□□ -1.4
BRCA1-220ENST00000492859 FGD1P98174 961 aa6.31□□□□□ -1.4
BRCA1-220ENST00000492859 PKD2Q13563 968 aa6.31□□□□□ -1.4
BRCA1-220ENST00000492859 BCCIPQ9P287 314 aaKnown RBP eCLIP6.31□□□□□ -1.4
BRCA1-220ENST00000492859 POTEMA6NI47 508 aa6.3□□□□□ -1.4
BRCA1-220ENST00000492859 BRPF1P55201 1214 aaPredicted RBP6.3□□□□□ -1.4
BRCA1-220ENST00000492859 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.3□□□□□ -1.4
BRCA1-220ENST00000492859 GABBR2O75899 941 aa6.29□□□□□ -1.4
BRCA1-220ENST00000492859 C1orf115Q9H7X2 142 aa6.29□□□□□ -1.4
BRCA1-220ENST00000492859 RSPH4AQ5TD94 716 aa6.28□□□□□ -1.4
BRCA1-220ENST00000492859 ZMYND15Q9H091 742 aa6.28□□□□□ -1.4
BRCA1-220ENST00000492859 MIER1Q8N108 512 aa6.27□□□□□ -1.41
BRCA1-220ENST00000492859 RSPH6AQ9H0K4 717 aa6.27□□□□□ -1.41
BRCA1-220ENST00000492859 ZRANB1Q9UGI0 708 aa6.27□□□□□ -1.41
BRCA1-220ENST00000492859 SPRYD3Q8NCJ5 442 aa6.25□□□□□ -1.41
BRCA1-220ENST00000492859 PHF12Q96QT6 1004 aa6.25□□□□□ -1.41
BRCA1-220ENST00000492859 RGS22Q8NE09 1264 aa6.23□□□□□ -1.41
BRCA1-220ENST00000492859 RAD21O60216 631 aa6.23□□□□□ -1.41
BRCA1-220ENST00000492859 POTEIP0CG38 1075 aa6.23□□□□□ -1.41
BRCA1-220ENST00000492859 POTEGQ6S5H5 508 aa6.23□□□□□ -1.41
BRCA1-220ENST00000492859 RASEFQ8IZ41 740 aa6.23□□□□□ -1.41
BRCA1-220ENST00000492859 KCTD17Q8N5Z5 321 aa6.23□□□□□ -1.41
BRCA1-220ENST00000492859 PLCD3Q8N3E9 789 aa6.22□□□□□ -1.41
BRCA1-220ENST00000492859 ZNF428Q96B54 188 aa6.22□□□□□ -1.41
BRCA1-220ENST00000492859 TSPYL2Q9H2G4 693 aaPredicted RBP6.22□□□□□ -1.41
BRCA1-220ENST00000492859 GALR2O43603 387 aaPredicted RBP6.21□□□□□ -1.42
BRCA1-220ENST00000492859 ZNF326Q5BKZ1 582 aaKnown RBP6.21□□□□□ -1.42
BRCA1-220ENST00000492859 TICAM2Q86XR7 235 aa6.21□□□□□ -1.42
BRCA1-220ENST00000492859 ZNF579Q8NAF0 562 aaKnown RBP6.2□□□□□ -1.42
BRCA1-220ENST00000492859 CCDC136Q96JN2 1154 aa6.19□□□□□ -1.42
BRCA1-220ENST00000492859 MTMR7Q9Y216 660 aa6.19□□□□□ -1.42
BRCA1-220ENST00000492859 BRPF3Q9ULD4 1205 aa6.18□□□□□ -1.42
BRCA1-220ENST00000492859 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.18□□□□□ -1.42
BRCA1-220ENST00000492859 RBM25P49756 843 aaKnown RBP6.17□□□□□ -1.42
BRCA1-220ENST00000492859 IRX6P78412 446 aaPredicted RBP6.17□□□□□ -1.42
BRCA1-220ENST00000492859 ZNF592Q92610 1267 aa6.17□□□□□ -1.42
BRCA1-220ENST00000492859 ZFP91Q96JP5 570 aaPredicted RBP6.17□□□□□ -1.42
BRCA1-220ENST00000492859 VASPP50552 380 aaPredicted RBP6.16□□□□□ -1.42
BRCA1-220ENST00000492859 NUBP1P53384 320 aa6.16□□□□□ -1.42
BRCA1-220ENST00000492859 CLSTN1O94985 981 aa6.15□□□□□ -1.42
BRCA1-220ENST00000492859 FOXD4L5Q5VV16 416 aaPredicted RBP6.15□□□□□ -1.42
BRCA1-220ENST00000492859 FOXD4L4Q8WXT5 416 aaPredicted RBP6.15□□□□□ -1.42
BRCA1-220ENST00000492859 CCDC61Q9Y6R9 512 aa6.15□□□□□ -1.42
BRCA1-220ENST00000492859 ARID3CA6NKF2 412 aa6.14□□□□□ -1.43
BRCA1-220ENST00000492859 FAM177A1Q8N128 213 aaPredicted RBP6.14□□□□□ -1.43
BRCA1-220ENST00000492859 MS4A3Q96HJ5 214 aa6.14□□□□□ -1.43
BRCA1-220ENST00000492859 TRPC6Q9Y210 931 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms