RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 YTHDC1Q96MU7 727 aaKnown RBP18.45■□□□□ 0.54
HMGN1-220ENST00000492280 PCF11O94913 1555 aaKnown RBP18.45■□□□□ 0.54
HMGN1-220ENST00000492280 TIAM1Q13009 1591 aa18.45■□□□□ 0.54
HMGN1-220ENST00000492280 FAM50AQ14320 339 aaKnown RBP18.41■□□□□ 0.54
HMGN1-220ENST00000492280 PHLDB1Q86UU1 1377 aa18.41■□□□□ 0.54
HMGN1-220ENST00000492280 KIF21AQ7Z4S6 1674 aa18.39■□□□□ 0.53
HMGN1-220ENST00000492280 MIER1Q8N108 512 aa18.38■□□□□ 0.53
HMGN1-220ENST00000492280 LRRC9Q6ZRR7 1453 aa18.37■□□□□ 0.53
HMGN1-220ENST00000492280 LAMC3Q9Y6N6 1575 aa18.37■□□□□ 0.53
HMGN1-220ENST00000492280 ACIN1Q9UKV3 1341 aaKnown RBP18.37■□□□□ 0.53
HMGN1-220ENST00000492280 RAB3GAP2Q9H2M9 1393 aa18.33■□□□□ 0.52
HMGN1-220ENST00000492280 WDR97A6NE52 1622 aa18.33■□□□□ 0.52
HMGN1-220ENST00000492280 CTTNBP2Q8WZ74 1663 aa18.32■□□□□ 0.52
HMGN1-220ENST00000492280 FHAD1B1AJZ9 1412 aa18.32■□□□□ 0.52
HMGN1-220ENST00000492280 CUL7Q14999 1698 aa18.3■□□□□ 0.52
HMGN1-220ENST00000492280 GAPVD1Q14C86 1478 aa18.3■□□□□ 0.52
HMGN1-220ENST00000492280 PDS5BQ9NTI5 1447 aa18.29■□□□□ 0.52
HMGN1-220ENST00000492280 CFAP43Q8NDM7 1665 aa18.29■□□□□ 0.52
HMGN1-220ENST00000492280 ABCA5Q8WWZ7 1642 aa18.27■□□□□ 0.52
HMGN1-220ENST00000492280 ARID3CA6NKF2 412 aa18.27■□□□□ 0.51
HMGN1-220ENST00000492280 GTF3C3Q9Y5Q9 886 aa18.24■□□□□ 0.51
HMGN1-220ENST00000492280 MAP3K1Q13233 1512 aa18.23■□□□□ 0.51
HMGN1-220ENST00000492280 AQRO60306 1485 aaKnown RBP eCLIP18.22■□□□□ 0.512e-11■■■■■ 27.4
HMGN1-220ENST00000492280 CENPBP07199 599 aaPredicted RBP18.22■□□□□ 0.51
HMGN1-220ENST00000492280 FYCO1Q9BQS8 1478 aa18.22■□□□□ 0.51
HMGN1-220ENST00000492280 SIN3AQ96ST3 1273 aa18.22■□□□□ 0.51
HMGN1-220ENST00000492280 EFCAB5A4FU69 1503 aa18.21■□□□□ 0.51
HMGN1-220ENST00000492280 CASKIN1Q8WXD9 1431 aa18.21■□□□□ 0.51
HMGN1-220ENST00000492280 MAPKBP1O60336 1514 aa18.21■□□□□ 0.51
HMGN1-220ENST00000492280 LRRIQ1Q96JM4 1722 aa18.19■□□□□ 0.5
HMGN1-220ENST00000492280 CLSPNQ9HAW4 1339 aa18.19■□□□□ 0.5
HMGN1-220ENST00000492280 SNAPC4Q5SXM2 1469 aa18.19■□□□□ 0.5
HMGN1-220ENST00000492280 SETD5Q9C0A6 1442 aa18.18■□□□□ 0.5
HMGN1-220ENST00000492280 TARBP1Q13395 1621 aaKnown RBP18.18■□□□□ 0.5
HMGN1-220ENST00000492280 MTUS2Q5JR59 1369 aa18.17■□□□□ 0.5
HMGN1-220ENST00000492280 FMN1Q68DA7 1419 aa18.15■□□□□ 0.5
HMGN1-220ENST00000492280 SAMD9Q5K651 1589 aa18.12■□□□□ 0.49
HMGN1-220ENST00000492280 PBRM1Q86U86 1689 aa18.11■□□□□ 0.49
HMGN1-220ENST00000492280 ZNF608Q9ULD9 1512 aaPredicted RBP18.11■□□□□ 0.49
HMGN1-220ENST00000492280 FGD6Q6ZV73 1430 aa18.09■□□□□ 0.49
HMGN1-220ENST00000492280 HIRIP3Q9BW71 556 aaPredicted RBP18.09■□□□□ 0.49
HMGN1-220ENST00000492280 PTPRKQ15262 1439 aa18.08■□□□□ 0.49
HMGN1-220ENST00000492280 GRIN2BQ13224 1484 aa18.06■□□□□ 0.48
HMGN1-220ENST00000492280 MAGI3Q5TCQ9 1506 aa18.06■□□□□ 0.48
HMGN1-220ENST00000492280 NCOA2Q15596 1464 aa18.05■□□□□ 0.48
HMGN1-220ENST00000492280 MRC2Q9UBG0 1479 aa18.05■□□□□ 0.48
HMGN1-220ENST00000492280 CHIC2Q9UKJ5 165 aa18.05■□□□□ 0.48
HMGN1-220ENST00000492280 CDK13Q14004 1512 aaKnown RBP18.02■□□□□ 0.48
HMGN1-220ENST00000492280 ADAMTS12P58397 1594 aa18.02■□□□□ 0.47
HMGN1-220ENST00000492280 IQGAP2Q13576 1575 aa18■□□□□ 0.47
HMGN1-220ENST00000492280 RRP7BPQ9NSQ0 103 aa18■□□□□ 0.47
HMGN1-220ENST00000492280 CCDC18Q5T9S5 1454 aa17.98■□□□□ 0.47
HMGN1-220ENST00000492280 MYOM3Q5VTT5 1437 aa17.98■□□□□ 0.47
HMGN1-220ENST00000492280 KCNH8Q96L42 1107 aa17.98■□□□□ 0.47
HMGN1-220ENST00000492280 SUPT6HQ7KZ85 1726 aaKnown RBP17.96■□□□□ 0.47
HMGN1-220ENST00000492280 FBLN2P98095 1184 aa17.95■□□□□ 0.46
HMGN1-220ENST00000492280 EHBP1L1Q8N3D4 1523 aa17.94■□□□□ 0.46
HMGN1-220ENST00000492280 PTPN23Q9H3S7 1636 aa17.92■□□□□ 0.46
HMGN1-220ENST00000492280 ERCC6Q03468 1493 aa17.92■□□□□ 0.46
HMGN1-220ENST00000492280 DDX10Q13206 875 aaKnown RBP17.92■□□□□ 0.46
HMGN1-220ENST00000492280 EPRSP07814 1512 aaKnown RBP17.92■□□□□ 0.46
HMGN1-220ENST00000492280 THOC2Q8NI27 1593 aaKnown RBP17.92■□□□□ 0.46
HMGN1-220ENST00000492280 UGGT2Q9NYU1 1516 aa17.91■□□□□ 0.46
HMGN1-220ENST00000492280 NAIPQ13075 1403 aa17.91■□□□□ 0.46
HMGN1-220ENST00000492280 HECW1Q76N89 1606 aa17.9■□□□□ 0.46
HMGN1-220ENST00000492280 EIF4G3O43432 1585 aaKnown RBP17.89■□□□□ 0.45
HMGN1-220ENST00000492280 HFM1A2PYH4 1435 aa17.89■□□□□ 0.45
HMGN1-220ENST00000492280 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.89■□□□□ 0.45
HMGN1-220ENST00000492280 IFT140Q96RY7 1462 aa17.88■□□□□ 0.45
HMGN1-220ENST00000492280 WDR62O43379 1518 aa17.87■□□□□ 0.45
HMGN1-220ENST00000492280 KDM6BO15054 1643 aa17.86■□□□□ 0.45
HMGN1-220ENST00000492280 FOXD1Q16676 465 aa17.85■□□□□ 0.45
HMGN1-220ENST00000492280 TRIM52Q96A61 297 aa17.85■□□□□ 0.45
HMGN1-220ENST00000492280 TONSLQ96HA7 1378 aa17.85■□□□□ 0.45
HMGN1-220ENST00000492280 ZNF644Q9H582 1327 aaPredicted RBP17.85■□□□□ 0.45
HMGN1-220ENST00000492280 PPP1R15AO75807 674 aaPredicted RBP17.84■□□□□ 0.45
HMGN1-220ENST00000492280 ARHGEF11O15085 1522 aa17.83■□□□□ 0.45
HMGN1-220ENST00000492280 DISP1Q96F81 1524 aa17.83■□□□□ 0.45
HMGN1-220ENST00000492280 UACAQ9BZF9 1416 aa17.83■□□□□ 0.44
HMGN1-220ENST00000492280 GRIN2AQ12879 1464 aa17.82■□□□□ 0.44
HMGN1-220ENST00000492280 CHMP7Q8WUX9 453 aaPredicted RBP17.82■□□□□ 0.44
HMGN1-220ENST00000492280 KIAA0556O60303 1618 aa17.82■□□□□ 0.44
HMGN1-220ENST00000492280 NUP153P49790 1475 aaKnown RBP17.78■□□□□ 0.44
HMGN1-220ENST00000492280 KIAA0586Q9BVV6 1533 aa17.78■□□□□ 0.44
HMGN1-220ENST00000492280 PLB1Q6P1J6 1458 aa17.76■□□□□ 0.43
HMGN1-220ENST00000492280 CEP170Q5SW79 1584 aa17.75■□□□□ 0.43
HMGN1-220ENST00000492280 DENND4BO75064 1496 aaPredicted RBP17.75■□□□□ 0.43
HMGN1-220ENST00000492280 ZNF777Q9ULD5 760 aaPredicted RBP17.74■□□□□ 0.43
HMGN1-220ENST00000492280 PRG4Q92954 1404 aaPredicted RBP17.74■□□□□ 0.43
HMGN1-220ENST00000492280 TCOF1Q13428 1488 aaKnown RBP17.74■□□□□ 0.43
HMGN1-220ENST00000492280 RAPGEF6Q8TEU7 1601 aa17.72■□□□□ 0.43
HMGN1-220ENST00000492280 GCC2Q8IWJ2 1684 aa17.7■□□□□ 0.42
HMGN1-220ENST00000492280 KDM5BQ9UGL1 1544 aa17.68■□□□□ 0.42
HMGN1-220ENST00000492280 MPHOSPH9Q99550 1183 aa17.68■□□□□ 0.42
HMGN1-220ENST00000492280 TIMELESSQ9UNS1 1208 aa17.68■□□□□ 0.42
HMGN1-220ENST00000492280 DAPK1P53355 1430 aa17.67■□□□□ 0.42
HMGN1-220ENST00000492280 SYNJ2O15056 1496 aa17.66■□□□□ 0.42
HMGN1-220ENST00000492280 KIF14Q15058 1648 aa17.66■□□□□ 0.42
HMGN1-220ENST00000492280 JPH4Q96JJ6 628 aa17.66■□□□□ 0.42
HMGN1-220ENST00000492280 MIA2Q96PC5 1412 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms