RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 NUP160Q12769 1436 aa14.98□□□□□ -0.01
USP39-216ENST00000490193 SHROOM2Q13796 1616 aa14.97□□□□□ -0.01
USP39-216ENST00000490193 ERCC6L2Q5T890 1561 aa14.97□□□□□ -0.01
USP39-216ENST00000490193 BIVM-ERCC5R4GMW8 1640 aa14.96□□□□□ -0.01
USP39-216ENST00000490193 CEP170Q5SW79 1584 aa14.96□□□□□ -0.01
USP39-216ENST00000490193 WRNQ14191 1432 aaPredicted RBP eCLIP14.95□□□□□ -0.02
USP39-216ENST00000490193 CACNB1Q02641 598 aaPredicted RBP14.95□□□□□ -0.02
USP39-216ENST00000490193 TOP2BQ02880 1626 aa14.94□□□□□ -0.02
USP39-216ENST00000490193 ERICH3Q5RHP9 1530 aa14.91□□□□□ -0.02
USP39-216ENST00000490193 FHAD1B1AJZ9 1412 aa14.91□□□□□ -0.02
USP39-216ENST00000490193 KIF13AQ9H1H9 1805 aa14.87□□□□□ -0.03
USP39-216ENST00000490193 RUSC2Q8N2Y8 1516 aa14.8□□□□□ -0.04
USP39-216ENST00000490193 PRG4Q92954 1404 aaPredicted RBP14.79□□□□□ -0.04
USP39-216ENST00000490193 SUPT5HO00267 1087 aaKnown RBP14.78□□□□□ -0.04
USP39-216ENST00000490193 JPH4Q96JJ6 628 aa14.75□□□□□ -0.05
USP39-216ENST00000490193 MAPKBP1O60336 1514 aa14.75□□□□□ -0.05
USP39-216ENST00000490193 ABCC10Q5T3U5 1492 aa14.73□□□□□ -0.05
USP39-216ENST00000490193 DIP2BQ9P265 1576 aa14.71□□□□□ -0.05
USP39-216ENST00000490193 ADCY10Q96PN6 1610 aa14.7□□□□□ -0.06
USP39-216ENST00000490193 CUL7Q14999 1698 aa14.67□□□□□ -0.06
USP39-216ENST00000490193 KIAA0586Q9BVV6 1533 aa14.66□□□□□ -0.06
USP39-216ENST00000490193 ILDR1Q86SU0 546 aaPredicted RBP14.66□□□□□ -0.06
USP39-216ENST00000490193 HOXD11P31277 338 aaPredicted RBP14.65□□□□□ -0.06
USP39-216ENST00000490193 FAM69CQ0P6D2 419 aa14.65□□□□□ -0.06
USP39-216ENST00000490193 NPM1P06748 294 aaKnown RBP eCLIP14.64□□□□□ -0.07
USP39-216ENST00000490193 RNF39Q9H2S5 420 aa14.62□□□□□ -0.07
USP39-216ENST00000490193 KDM6BO15054 1643 aa14.62□□□□□ -0.07
USP39-216ENST00000490193 IGF1RP08069 1367 aa14.61□□□□□ -0.07
USP39-216ENST00000490193 DCAF8L1A6NGE4 600 aa14.6□□□□□ -0.07
USP39-216ENST00000490193 KIF27Q86VH2 1401 aa14.59□□□□□ -0.07
USP39-216ENST00000490193 TSPOAP1O95153 1857 aa14.57□□□□□ -0.08
USP39-216ENST00000490193 KDM4FA0A1W2PPD8 638 aa14.57□□□□□ -0.08
USP39-216ENST00000490193 PPP4R3CPQ6ZMV5 832 aa14.55□□□□□ -0.08
USP39-216ENST00000490193 PTPRGP23470 1445 aa14.53□□□□□ -0.08
USP39-216ENST00000490193 GLI2P10070 1586 aa14.52□□□□□ -0.08
USP39-216ENST00000490193 ABCC2Q92887 1545 aa14.52□□□□□ -0.08
USP39-216ENST00000490193 PPRC1Q5VV67 1664 aaKnown RBP14.51□□□□□ -0.09
USP39-216ENST00000490193 IQGAP2Q13576 1575 aa14.51□□□□□ -0.09
USP39-216ENST00000490193 CARMIL2Q6F5E8 1435 aa14.5□□□□□ -0.09
USP39-216ENST00000490193 TNIKQ9UKE5 1360 aa14.5□□□□□ -0.09
USP39-216ENST00000490193 UHRF1BP1LA0JNW5 1464 aa14.5□□□□□ -0.09
USP39-216ENST00000490193 CARMIL1Q5VZK9 1371 aa14.49□□□□□ -0.09
USP39-216ENST00000490193 PLB1Q6P1J6 1458 aa14.49□□□□□ -0.09
USP39-216ENST00000490193 ASXL2Q76L83 1435 aa14.47□□□□□ -0.09
USP39-216ENST00000490193 DISP1Q96F81 1524 aa14.44□□□□□ -0.1
USP39-216ENST00000490193 UACAQ9BZF9 1416 aa14.43□□□□□ -0.1
USP39-216ENST00000490193 MAP3K4Q9Y6R4 1608 aa14.43□□□□□ -0.1
USP39-216ENST00000490193 UGGT2Q9NYU1 1516 aa14.42□□□□□ -0.1
USP39-216ENST00000490193 KDM5BQ9UGL1 1544 aa14.42□□□□□ -0.1
USP39-216ENST00000490193 C1QBPQ07021 282 aaKnown RBP14.42□□□□□ -0.1
USP39-216ENST00000490193 CNKSR2Q8WXI2 1034 aa14.42□□□□□ -0.1
USP39-216ENST00000490193 RNF216Q9NWF9 866 aaPredicted RBP14.42□□□□□ -0.1
USP39-216ENST00000490193 EPRSP07814 1512 aaKnown RBP14.4□□□□□ -0.1
USP39-216ENST00000490193 ZCCHC11Q5TAX3 1644 aaKnown RBP14.39□□□□□ -0.11
USP39-216ENST00000490193 ADGRL1O94910 1474 aa14.38□□□□□ -0.11
USP39-216ENST00000490193 KIAA0556O60303 1618 aa14.38□□□□□ -0.11
USP39-216ENST00000490193 HECW2Q9P2P5 1572 aa14.38□□□□□ -0.11
USP39-216ENST00000490193 COL17A1Q9UMD9 1497 aaPredicted RBP14.38□□□□□ -0.11
USP39-216ENST00000490193 TTBK1Q5TCY1 1321 aaPredicted RBP14.37□□□□□ -0.11
USP39-216ENST00000490193 TEX14Q8IWB6 1497 aa14.37□□□□□ -0.11
USP39-216ENST00000490193 RAPGEF2Q9Y4G8 1499 aa14.37□□□□□ -0.11
USP39-216ENST00000490193 CTTNBP2Q8WZ74 1663 aa14.32□□□□□ -0.12
USP39-216ENST00000490193 WDR7Q9Y4E6 1490 aa14.31□□□□□ -0.12
USP39-216ENST00000490193 CFAP43Q8NDM7 1665 aa14.3□□□□□ -0.12
USP39-216ENST00000490193 ABCA8O94911 1581 aa14.27□□□□□ -0.12
USP39-216ENST00000490193 MAGI3Q5TCQ9 1506 aa14.27□□□□□ -0.12
USP39-216ENST00000490193 GOLGA3Q08378 1498 aa14.25□□□□□ -0.13
USP39-216ENST00000490193 CD109Q6YHK3 1445 aa14.22□□□□□ -0.13
USP39-216ENST00000490193 PRXQ9BXM0 1461 aa14.18□□□□□ -0.14
USP39-216ENST00000490193 ARAP3Q8WWN8 1544 aa14.17□□□□□ -0.14
USP39-216ENST00000490193 KIF21BO75037 1637 aa14.16□□□□□ -0.14
USP39-216ENST00000490193 FBXO41Q8TF61 875 aa14.15□□□□□ -0.14
USP39-216ENST00000490193 ABCA9Q8IUA7 1624 aa14.14□□□□□ -0.15
USP39-216ENST00000490193 KCNH8Q96L42 1107 aa14.13□□□□□ -0.15
USP39-216ENST00000490193 PHLDB1Q86UU1 1377 aa14.11□□□□□ -0.15
USP39-216ENST00000490193 ATP10BO94823 1461 aa14.11□□□□□ -0.15
USP39-216ENST00000490193 SAMD9Q5K651 1589 aa14.1□□□□□ -0.15
USP39-216ENST00000490193 ADAMTSL3P82987 1691 aa14.1□□□□□ -0.15
USP39-216ENST00000490193 NEO1Q92859 1461 aa14.06□□□□□ -0.16
USP39-216ENST00000490193 RAPGEF6Q8TEU7 1601 aa14.06□□□□□ -0.16
USP39-216ENST00000490193 FAM9AQ8IZU1 332 aaPredicted RBP14.05□□□□□ -0.16
USP39-216ENST00000490193 FRMPD1Q5SYB0 1578 aa14.05□□□□□ -0.16
USP39-216ENST00000490193 PTPRMP28827 1452 aa14.04□□□□□ -0.16
USP39-216ENST00000490193 BCORL1Q5H9F3 1711 aa14.04□□□□□ -0.16
USP39-216ENST00000490193 NUP153P49790 1475 aaKnown RBP13.99□□□□□ -0.17
USP39-216ENST00000490193 P3H3Q8IVL6 736 aa13.99□□□□□ -0.17
USP39-216ENST00000490193 MADDQ8WXG6 1647 aa13.99□□□□□ -0.17
USP39-216ENST00000490193 ARHGEF40Q8TER5 1519 aa13.99□□□□□ -0.17
USP39-216ENST00000490193 RICTORQ6R327 1708 aa13.98□□□□□ -0.17
USP39-216ENST00000490193 ARID3CA6NKF2 412 aa13.98□□□□□ -0.17
USP39-216ENST00000490193 RAPGEF3O95398 923 aa13.98□□□□□ -0.17
USP39-216ENST00000490193 PCF11O94913 1555 aaKnown RBP13.97□□□□□ -0.17
USP39-216ENST00000490193 CFAP74Q9C0B2 1584 aa13.96□□□□□ -0.17
USP39-216ENST00000490193 LMTK3Q96Q04 1460 aa13.96□□□□□ -0.17
USP39-216ENST00000490193 CSRNP3Q8WYN3 585 aa13.95□□□□□ -0.18
USP39-216ENST00000490193 ZMYM4Q5VZL5 1548 aa13.94□□□□□ -0.18
USP39-216ENST00000490193 FHOD3Q2V2M9 1422 aa13.93□□□□□ -0.18
USP39-216ENST00000490193 RIMS1Q86UR5 1692 aaKnown RBP13.93□□□□□ -0.18
USP39-216ENST00000490193 DENND4BO75064 1496 aaPredicted RBP13.93□□□□□ -0.18
USP39-216ENST00000490193 EEA1Q15075 1411 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms