RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 POTEIP0CG38 1075 aa10.7□□□□□ -0.7
CPSF3-205ENST00000489629 GALR2O43603 387 aaPredicted RBP10.69□□□□□ -0.7
CPSF3-205ENST00000489629 KIF12Q96FN5 646 aa10.63□□□□□ -0.71
CPSF3-205ENST00000489629 MS4A3Q96HJ5 214 aa10.62□□□□□ -0.71
CPSF3-205ENST00000489629 DCBLD2Q96PD2 775 aa10.6□□□□□ -0.71
CPSF3-205ENST00000489629 IFNLR1Q8IU57 520 aaPredicted RBP10.59□□□□□ -0.71
CPSF3-205ENST00000489629 KLHL34Q8N239 644 aa10.58□□□□□ -0.72
CPSF3-205ENST00000489629 FAM212AQ96EL1 285 aa10.58□□□□□ -0.72
CPSF3-205ENST00000489629 MAP3K13O43283 966 aa10.57□□□□□ -0.72
CPSF3-205ENST00000489629 DCAF8Q5TAQ9 597 aa10.53□□□□□ -0.72
CPSF3-205ENST00000489629 SGIP1Q9BQI5 828 aa10.51□□□□□ -0.73
CPSF3-205ENST00000489629 ASTLQ6HA08 431 aaPredicted RBP10.5□□□□□ -0.73
CPSF3-205ENST00000489629 TRPC6Q9Y210 931 aa10.5□□□□□ -0.73
CPSF3-205ENST00000489629 ATMINO43313 823 aaPredicted RBP10.49□□□□□ -0.73
CPSF3-205ENST00000489629 PELP1Q8IZL8 1130 aaKnown RBP10.49□□□□□ -0.73
CPSF3-205ENST00000489629 SPOCK2Q92563 424 aa10.49□□□□□ -0.73
CPSF3-205ENST00000489629 GSE1Q14687 1217 aa10.47□□□□□ -0.73
CPSF3-205ENST00000489629 PCDHB13Q9Y5F0 798 aa10.47□□□□□ -0.73
CPSF3-205ENST00000489629 PYGBP11216 843 aa10.45□□□□□ -0.74
CPSF3-205ENST00000489629 LHX8Q68G74 356 aa10.45□□□□□ -0.74
CPSF3-205ENST00000489629 IFNL1Q8IU54 200 aa10.45□□□□□ -0.74
CPSF3-205ENST00000489629 BMP2KQ9NSY1 1161 aaPredicted RBP10.45□□□□□ -0.74
CPSF3-205ENST00000489629 TIE1P35590 1138 aa10.44□□□□□ -0.74
CPSF3-205ENST00000489629 ATN1P54259 1190 aaPredicted RBP10.43□□□□□ -0.74
CPSF3-205ENST00000489629 CHRM1P11229 460 aaPredicted RBP10.4□□□□□ -0.74
CPSF3-205ENST00000489629 TTLL13PA6NNM8 815 aa10.39□□□□□ -0.75
CPSF3-205ENST00000489629 SLC39A7Q92504 469 aa10.37□□□□□ -0.75
CPSF3-205ENST00000489629 PCDHB8Q9UN66 801 aa10.36□□□□□ -0.75
CPSF3-205ENST00000489629 POTEB2H3BUK9 544 aa10.35□□□□□ -0.75
CPSF3-205ENST00000489629 C7P10643 843 aa10.35□□□□□ -0.75
CPSF3-205ENST00000489629 METRNQ9UJH8 293 aa10.35□□□□□ -0.75
CPSF3-205ENST00000489629 CIZ1Q9ULV3 898 aaPredicted RBP10.35□□□□□ -0.75
CPSF3-205ENST00000489629 POTEFA5A3E0 1075 aa10.31□□□□□ -0.76
CPSF3-205ENST00000489629 TMEM106CQ9BVX2 250 aa10.31□□□□□ -0.76
CPSF3-205ENST00000489629 TRIM35Q9UPQ4 493 aa10.31□□□□□ -0.76
CPSF3-205ENST00000489629 ZNF467Q7Z7K2 595 aaPredicted RBP10.3□□□□□ -0.76
CPSF3-205ENST00000489629 TRIM41Q8WV44 630 aa10.26□□□□□ -0.77
CPSF3-205ENST00000489629 POTEJP0CG39 1038 aa10.25□□□□□ -0.77
CPSF3-205ENST00000489629 IER5LQ5T953 404 aa10.25□□□□□ -0.77
CPSF3-205ENST00000489629 COLQQ9Y215 455 aaPredicted RBP10.24□□□□□ -0.77
CPSF3-205ENST00000489629 OTUD5Q96G74 571 aa10.23□□□□□ -0.77
CPSF3-205ENST00000489629 PSEN1P49768 467 aa10.21□□□□□ -0.77
CPSF3-205ENST00000489629 PDAP1Q13442 181 aaKnown RBP10.2□□□□□ -0.78
CPSF3-205ENST00000489629 IRX5P78411 483 aaPredicted RBP10.19□□□□□ -0.78
CPSF3-205ENST00000489629 SEC24BO95487 1268 aa10.17□□□□□ -0.78
CPSF3-205ENST00000489629 RNF25Q96BH1 459 aaPredicted RBP10.16□□□□□ -0.78
CPSF3-205ENST00000489629 PLCG2P16885 1265 aa10.12□□□□□ -0.79
CPSF3-205ENST00000489629 MAMSTRQ6ZN01 415 aa10.12□□□□□ -0.79
CPSF3-205ENST00000489629 OCEL1Q9H607 264 aa10.12□□□□□ -0.79
CPSF3-205ENST00000489629 RIOK3O14730 519 aaKnown RBP10.11□□□□□ -0.79
CPSF3-205ENST00000489629 PKD2Q13563 968 aa10.11□□□□□ -0.79
CPSF3-205ENST00000489629 MKRN3Q13064 507 aaKnown RBP10.09□□□□□ -0.79
CPSF3-205ENST00000489629 GOLGA2Q08379 1002 aa10.08□□□□□ -0.8
CPSF3-205ENST00000489629 ILDR1Q86SU0 546 aaPredicted RBP10.08□□□□□ -0.8
CPSF3-205ENST00000489629 PDCD7Q8N8D1 485 aaKnown RBP10.08□□□□□ -0.8
CPSF3-205ENST00000489629 CABP2Q9NPB3 220 aa10.08□□□□□ -0.8
CPSF3-205ENST00000489629 SCUBE2Q9NQ36 999 aa10.07□□□□□ -0.8
CPSF3-205ENST00000489629 VGFO15240 615 aaPredicted RBP10.06□□□□□ -0.8
CPSF3-205ENST00000489629 ECM2O94769 699 aaPredicted RBP10.06□□□□□ -0.8
CPSF3-205ENST00000489629 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.04□□□□□ -0.8
CPSF3-205ENST00000489629 ZFP91Q96JP5 570 aaPredicted RBP10.04□□□□□ -0.8
CPSF3-205ENST00000489629 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.04□□□□□ -0.81e-6■■■□□ 16
CPSF3-205ENST00000489629 RGL2O15211 777 aa10.01□□□□□ -0.81
CPSF3-205ENST00000489629 EFCAB3Q8N7B9 438 aa10.01□□□□□ -0.81
CPSF3-205ENST00000489629 DPY19L2Q6NUT2 758 aa9.98□□□□□ -0.81
CPSF3-205ENST00000489629 L3MBTL3Q96JM7 780 aaPredicted RBP9.96□□□□□ -0.82
CPSF3-205ENST00000489629 TAOK2Q9UL54 1235 aa9.96□□□□□ -0.82
CPSF3-205ENST00000489629 SOX12O15370 315 aa9.94□□□□□ -0.82
CPSF3-205ENST00000489629 BCL11BQ9C0K0 894 aaPredicted RBP9.94□□□□□ -0.82
CPSF3-205ENST00000489629 SLAIN1Q8ND83 568 aa9.93□□□□□ -0.82
CPSF3-205ENST00000489629 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.91□□□□□ -0.82
CPSF3-205ENST00000489629 STK24Q9Y6E0 443 aa9.91□□□□□ -0.82
CPSF3-205ENST00000489629 STK25O00506 426 aa9.9□□□□□ -0.82
CPSF3-205ENST00000489629 LCE2DQ5TA82 110 aaPredicted RBP9.9□□□□□ -0.82
CPSF3-205ENST00000489629 MS4A4AQ96JQ5 239 aa9.9□□□□□ -0.82
CPSF3-205ENST00000489629 PHF8Q9UPP1 1060 aa9.9□□□□□ -0.82
CPSF3-205ENST00000489629 BOLA1Q9Y3E2 137 aa9.89□□□□□ -0.83
CPSF3-205ENST00000489629 TMEM121BQ9BXQ6 578 aaPredicted RBP9.88□□□□□ -0.83
CPSF3-205ENST00000489629 C3orf67Q6ZVT6 689 aa9.86□□□□□ -0.83
CPSF3-205ENST00000489629 FBXO22Q8NEZ5 403 aa9.86□□□□□ -0.83
CPSF3-205ENST00000489629 FAM163AQ96GL9 167 aaPredicted RBP9.85□□□□□ -0.83
CPSF3-205ENST00000489629 MFRPQ9BY79 579 aa9.84□□□□□ -0.83
CPSF3-205ENST00000489629 NLRP6P59044 892 aa9.83□□□□□ -0.84
CPSF3-205ENST00000489629 POTEMA6NI47 508 aa9.81□□□□□ -0.84
CPSF3-205ENST00000489629 G3V3G9 751 aa9.81□□□□□ -0.84
CPSF3-205ENST00000489629 MICALL2Q8IY33 904 aa9.81□□□□□ -0.84
CPSF3-205ENST00000489629 POTEGQ6S5H5 508 aa9.8□□□□□ -0.84
CPSF3-205ENST00000489629 HS6ST3Q8IZP7 471 aa9.79□□□□□ -0.84
CPSF3-205ENST00000489629 ST18O60284 1047 aa9.77□□□□□ -0.85
CPSF3-205ENST00000489629 SNPHO15079 494 aa9.76□□□□□ -0.85
CPSF3-205ENST00000489629 TMEM92Q6UXU6 159 aa9.76□□□□□ -0.85
CPSF3-205ENST00000489629 DNAJC5Q9H3Z4 198 aa9.74□□□□□ -0.85
CPSF3-205ENST00000489629 CHGAP10645 457 aaKnown RBP9.73□□□□□ -0.85
CPSF3-205ENST00000489629 PPP1R37O75864 691 aa9.69□□□□□ -0.86
CPSF3-205ENST00000489629 HOXB3P14651 431 aaPredicted RBP9.69□□□□□ -0.86
CPSF3-205ENST00000489629 NKX1-1Q15270 411 aaPredicted RBP9.68□□□□□ -0.86
CPSF3-205ENST00000489629 PCDH10Q9P2E7 1040 aa9.64□□□□□ -0.87
CPSF3-205ENST00000489629 KIF3CO14782 793 aa9.63□□□□□ -0.87
CPSF3-205ENST00000489629 DOK7Q18PE1 504 aa9.61□□□□□ -0.87
CPSF3-205ENST00000489629 MARVELD3Q96A59 401 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms