RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 UBTFP17480 764 aaKnown RBP22.57■■□□□ 1.2
C9orf3-221ENST00000489562 OSCARQ8IYS5 282 aa22.57■■□□□ 1.2
C9orf3-221ENST00000489562 CLASP1Q7Z460 1538 aa22.57■■□□□ 1.2
C9orf3-221ENST00000489562 IQGAP2Q13576 1575 aa22.56■■□□□ 1.2
C9orf3-221ENST00000489562 TNIKQ9UKE5 1360 aa22.53■■□□□ 1.2
C9orf3-221ENST00000489562 EHMT2Q96KQ7 1210 aa22.53■■□□□ 1.2
C9orf3-221ENST00000489562 LOC105371045A0A1W2PR82 267 aa22.49■■□□□ 1.19
C9orf3-221ENST00000489562 SHROOM2Q13796 1616 aa22.48■■□□□ 1.19
C9orf3-221ENST00000489562 UGGT2Q9NYU1 1516 aa22.44■■□□□ 1.18
C9orf3-221ENST00000489562 JPH4Q96JJ6 628 aa22.39■■□□□ 1.17
C9orf3-221ENST00000489562 EFCAB5A4FU69 1503 aa22.39■■□□□ 1.17
C9orf3-221ENST00000489562 SAMD9Q5K651 1589 aa22.37■■□□□ 1.17
C9orf3-221ENST00000489562 CEP162Q5TB80 1403 aa22.34■■□□□ 1.17
C9orf3-221ENST00000489562 CARMIL2Q6F5E8 1435 aa22.34■■□□□ 1.17
C9orf3-221ENST00000489562 KIAA0556O60303 1618 aa22.33■■□□□ 1.17
C9orf3-221ENST00000489562 PRG4Q92954 1404 aaPredicted RBP22.32■■□□□ 1.16
C9orf3-221ENST00000489562 CLIP1P30622 1438 aa22.31■■□□□ 1.16
C9orf3-221ENST00000489562 DISP1Q96F81 1524 aa22.31■■□□□ 1.16
C9orf3-221ENST00000489562 ARHGAP35Q9NRY4 1499 aa22.28■■□□□ 1.16
C9orf3-221ENST00000489562 RANGAP1P46060 587 aaPredicted RBP22.26■■□□□ 1.15
C9orf3-221ENST00000489562 ERCC6L2Q5T890 1561 aa22.24■■□□□ 1.15
C9orf3-221ENST00000489562 ARHGEF11O15085 1522 aa22.23■■□□□ 1.15
C9orf3-221ENST00000489562 RIMBP3CA6NJZ7 1639 aa22.2■■□□□ 1.14
C9orf3-221ENST00000489562 RIMBP3BA6NNM3 1639 aa22.2■■□□□ 1.14
C9orf3-221ENST00000489562 RIMBP3Q9UFD9 1639 aa22.2■■□□□ 1.14
C9orf3-221ENST00000489562 FHOD3Q2V2M9 1422 aa22.18■■□□□ 1.14
C9orf3-221ENST00000489562 ARAP1Q96P48 1450 aa22.16■■□□□ 1.14
C9orf3-221ENST00000489562 P3H3Q8IVL6 736 aa22.15■■□□□ 1.14
C9orf3-221ENST00000489562 FMN1Q68DA7 1419 aa22.14■■□□□ 1.14
C9orf3-221ENST00000489562 PTPRGP23470 1445 aa22.13■■□□□ 1.13
C9orf3-221ENST00000489562 RAPGEF6Q8TEU7 1601 aa22.06■■□□□ 1.12
C9orf3-221ENST00000489562 VPS8Q8N3P4 1428 aa22.06■■□□□ 1.12
C9orf3-221ENST00000489562 ABCA8O94911 1581 aa22.04■■□□□ 1.12
C9orf3-221ENST00000489562 UACAQ9BZF9 1416 aa22.02■■□□□ 1.12
C9orf3-221ENST00000489562 PCF11O94913 1555 aaKnown RBP22.02■■□□□ 1.12
C9orf3-221ENST00000489562 TTBK1Q5TCY1 1321 aaPredicted RBP22.02■■□□□ 1.12
C9orf3-221ENST00000489562 HECW1Q76N89 1606 aa22.01■■□□□ 1.11
C9orf3-221ENST00000489562 FYCO1Q9BQS8 1478 aa22.01■■□□□ 1.11
C9orf3-221ENST00000489562 CASKIN1Q8WXD9 1431 aa22■■□□□ 1.11
C9orf3-221ENST00000489562 UHRF1BP1LA0JNW5 1464 aa22■■□□□ 1.11
C9orf3-221ENST00000489562 PLB1Q6P1J6 1458 aa22■■□□□ 1.11
C9orf3-221ENST00000489562 ABCC2Q92887 1545 aa22■■□□□ 1.11
C9orf3-221ENST00000489562 ADCY10Q96PN6 1610 aa21.95■■□□□ 1.1
C9orf3-221ENST00000489562 NUP153P49790 1475 aaKnown RBP21.92■■□□□ 1.1
C9orf3-221ENST00000489562 CYB5RLQ6IPT4 315 aa21.92■■□□□ 1.1
C9orf3-221ENST00000489562 CCDC18Q5T9S5 1454 aa21.9■■□□□ 1.1
C9orf3-221ENST00000489562 LRRIQ1Q96JM4 1722 aa21.9■■□□□ 1.1
C9orf3-221ENST00000489562 KDM5BQ9UGL1 1544 aa21.88■■□□□ 1.09
C9orf3-221ENST00000489562 EPRSP07814 1512 aaKnown RBP21.87■■□□□ 1.09
C9orf3-221ENST00000489562 CFAP43Q8NDM7 1665 aa21.86■■□□□ 1.09
C9orf3-221ENST00000489562 ZCCHC11Q5TAX3 1644 aaKnown RBP21.86■■□□□ 1.09
C9orf3-221ENST00000489562 ATP1B4Q9UN42 357 aaPredicted RBP21.85■■□□□ 1.09
C9orf3-221ENST00000489562 MAP3K1Q13233 1512 aa21.85■■□□□ 1.09
C9orf3-221ENST00000489562 ATP10BO94823 1461 aa21.83■■□□□ 1.08
C9orf3-221ENST00000489562 TIAM1Q13009 1591 aa21.82■■□□□ 1.08
C9orf3-221ENST00000489562 CDK13Q14004 1512 aaKnown RBP21.8■■□□□ 1.08
C9orf3-221ENST00000489562 NPM1P06748 294 aaKnown RBP eCLIP21.8■■□□□ 1.08
C9orf3-221ENST00000489562 APLP2Q06481 763 aa21.8■■□□□ 1.08
C9orf3-221ENST00000489562 CDK11AQ9UQ88 783 aaPredicted RBP21.75■■□□□ 1.07
C9orf3-221ENST00000489562 MAPKBP1O60336 1514 aa21.75■■□□□ 1.07
C9orf3-221ENST00000489562 ARID3CA6NKF2 412 aa21.74■■□□□ 1.07
C9orf3-221ENST00000489562 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.74■■□□□ 1.07
C9orf3-221ENST00000489562 HNRNPUL2Q1KMD3 747 aaKnown RBP21.74■■□□□ 1.07
C9orf3-221ENST00000489562 EHBP1L1Q8N3D4 1523 aa21.7■■□□□ 1.07
C9orf3-221ENST00000489562 PLEKHD1A6NEE1 506 aa21.69■■□□□ 1.06
C9orf3-221ENST00000489562 TROQ12816 1431 aaPredicted RBP21.68■■□□□ 1.06
C9orf3-221ENST00000489562 ASXL2Q76L83 1435 aa21.68■■□□□ 1.06
C9orf3-221ENST00000489562 LRRC9Q6ZRR7 1453 aa21.68■■□□□ 1.06
C9orf3-221ENST00000489562 WDR7Q9Y4E6 1490 aa21.68■■□□□ 1.06
C9orf3-221ENST00000489562 MTUS2Q5JR59 1369 aa21.67■■□□□ 1.06
C9orf3-221ENST00000489562 MAGI3Q5TCQ9 1506 aa21.66■■□□□ 1.06
C9orf3-221ENST00000489562 SUPT6HQ7KZ85 1726 aaKnown RBP21.63■■□□□ 1.05
C9orf3-221ENST00000489562 KIF14Q15058 1648 aa21.63■■□□□ 1.05
C9orf3-221ENST00000489562 KANK4Q5T7N3 995 aaPredicted RBP21.58■■□□□ 1.05
C9orf3-221ENST00000489562 GLI2P10070 1586 aa21.55■■□□□ 1.04
C9orf3-221ENST00000489562 DIP2BQ9P265 1576 aa21.55■■□□□ 1.04
C9orf3-221ENST00000489562 ABCA9Q8IUA7 1624 aa21.55■■□□□ 1.04
C9orf3-221ENST00000489562 ABCC10Q5T3U5 1492 aa21.54■■□□□ 1.04
C9orf3-221ENST00000489562 NCOA2Q15596 1464 aa21.52■■□□□ 1.04
C9orf3-221ENST00000489562 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.52■■□□□ 1.04
C9orf3-221ENST00000489562 KCNH8Q96L42 1107 aa21.52■■□□□ 1.04
C9orf3-221ENST00000489562 KIF13AQ9H1H9 1805 aa21.52■■□□□ 1.04
C9orf3-221ENST00000489562 TTC37Q6PGP7 1564 aa21.51■■□□□ 1.03
C9orf3-221ENST00000489562 MYO5CQ9NQX4 1742 aa21.51■■□□□ 1.03
C9orf3-221ENST00000489562 ITSN2Q9NZM3 1697 aa21.5■■□□□ 1.03
C9orf3-221ENST00000489562 CDC42BPAQ5VT25 1732 aa21.48■■□□□ 1.03
C9orf3-221ENST00000489562 MAP3K4Q9Y6R4 1608 aa21.47■■□□□ 1.03
C9orf3-221ENST00000489562 PREX2Q70Z35 1606 aa21.46■■□□□ 1.03
C9orf3-221ENST00000489562 CCNB3Q8WWL7 1395 aa21.45■■□□□ 1.02
C9orf3-221ENST00000489562 ARAP3Q8WWN8 1544 aa21.45■■□□□ 1.02
C9orf3-221ENST00000489562 PPARGC1BQ86YN6 1023 aaKnown RBP21.44■■□□□ 1.02
C9orf3-221ENST00000489562 FAM69CQ0P6D2 419 aa21.42■■□□□ 1.02
C9orf3-221ENST00000489562 MYOM3Q5VTT5 1437 aa21.42■■□□□ 1.02
C9orf3-221ENST00000489562 CDC42BPBQ9Y5S2 1711 aa21.42■■□□□ 1.02
C9orf3-221ENST00000489562 GPATCH8Q9UKJ3 1502 aaKnown RBP21.41■■□□□ 1.02
C9orf3-221ENST00000489562 CD109Q6YHK3 1445 aa21.4■■□□□ 1.02
C9orf3-221ENST00000489562 PLCH2O75038 1416 aa21.39■■□□□ 1.02
C9orf3-221ENST00000489562 PHLDB1Q86UU1 1377 aa21.39■■□□□ 1.02
C9orf3-221ENST00000489562 CFAP74Q9C0B2 1584 aa21.38■■□□□ 1.01
C9orf3-221ENST00000489562 MIA2Q96PC5 1412 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms