RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 FAM69CQ0P6D2 419 aa29.2■■■□□ 2.26
USP48-210ENST00000489108 NPM1P06748 294 aaKnown RBP eCLIP29.14■■■□□ 2.26
USP48-210ENST00000489108 ABCC10Q5T3U5 1492 aa29.12■■■□□ 2.25
USP48-210ENST00000489108 RUSC2Q8N2Y8 1516 aa29.04■■■□□ 2.24
USP48-210ENST00000489108 MAPKBP1O60336 1514 aa29.03■■■□□ 2.24
USP48-210ENST00000489108 DIP2BQ9P265 1576 aa29.01■■■□□ 2.23
USP48-210ENST00000489108 ADCY10Q96PN6 1610 aa28.99■■■□□ 2.23
USP48-210ENST00000489108 KDM4FA0A1W2PPD8 638 aa28.98■■■□□ 2.23
USP48-210ENST00000489108 KDM6BO15054 1643 aa28.92■■■□□ 2.22
USP48-210ENST00000489108 TSPOAP1O95153 1857 aa28.91■■■□□ 2.22
USP48-210ENST00000489108 KIAA0586Q9BVV6 1533 aa28.88■■■□□ 2.21
USP48-210ENST00000489108 IGF1RP08069 1367 aa28.83■■■□□ 2.21
USP48-210ENST00000489108 TTBK1Q5TCY1 1321 aaPredicted RBP28.78■■■□□ 2.2
USP48-210ENST00000489108 PTPRGP23470 1445 aa28.76■■■□□ 2.19
USP48-210ENST00000489108 KIF27Q86VH2 1401 aa28.71■■■□□ 2.19
USP48-210ENST00000489108 CUL7Q14999 1698 aa28.7■■■□□ 2.18
USP48-210ENST00000489108 ILDR1Q86SU0 546 aaPredicted RBP28.69■■■□□ 2.18
USP48-210ENST00000489108 ABCC2Q92887 1545 aa28.64■■■□□ 2.17
USP48-210ENST00000489108 TNIKQ9UKE5 1360 aa28.63■■■□□ 2.17
USP48-210ENST00000489108 ASXL2Q76L83 1435 aa28.62■■■□□ 2.17
USP48-210ENST00000489108 CARMIL1Q5VZK9 1371 aa28.62■■■□□ 2.17
USP48-210ENST00000489108 CARMIL2Q6F5E8 1435 aa28.61■■■□□ 2.17
USP48-210ENST00000489108 PPRC1Q5VV67 1664 aaKnown RBP28.6■■■□□ 2.17
USP48-210ENST00000489108 PLB1Q6P1J6 1458 aa28.59■■■□□ 2.17
USP48-210ENST00000489108 GLI2P10070 1586 aa28.58■■■□□ 2.17
USP48-210ENST00000489108 ADGRL1O94910 1474 aa28.53■■■□□ 2.16
USP48-210ENST00000489108 UHRF1BP1LA0JNW5 1464 aa28.52■■■□□ 2.16
USP48-210ENST00000489108 COL17A1Q9UMD9 1497 aaPredicted RBP28.51■■■□□ 2.15
USP48-210ENST00000489108 UACAQ9BZF9 1416 aa28.5■■■□□ 2.15
USP48-210ENST00000489108 IQGAP2Q13576 1575 aa28.49■■■□□ 2.15
USP48-210ENST00000489108 EPRSP07814 1512 aaKnown RBP28.43■■■□□ 2.14
USP48-210ENST00000489108 DISP1Q96F81 1524 aa28.43■■■□□ 2.14
USP48-210ENST00000489108 KDM5BQ9UGL1 1544 aa28.4■■■□□ 2.14
USP48-210ENST00000489108 MAP3K4Q9Y6R4 1608 aa28.4■■■□□ 2.14
USP48-210ENST00000489108 TEX14Q8IWB6 1497 aa28.35■■■□□ 2.13
USP48-210ENST00000489108 ZCCHC11Q5TAX3 1644 aaKnown RBP28.34■■■□□ 2.13
USP48-210ENST00000489108 HECW2Q9P2P5 1572 aa28.32■■■□□ 2.12
USP48-210ENST00000489108 UGGT2Q9NYU1 1516 aa28.3■■■□□ 2.12
USP48-210ENST00000489108 RAPGEF2Q9Y4G8 1499 aa28.26■■■□□ 2.11
USP48-210ENST00000489108 KIAA0556O60303 1618 aa28.24■■■□□ 2.11
USP48-210ENST00000489108 WDR7Q9Y4E6 1490 aa28.21■■■□□ 2.11
USP48-210ENST00000489108 KCNH8Q96L42 1107 aa28.18■■■□□ 2.1
USP48-210ENST00000489108 CD109Q6YHK3 1445 aa28.16■■■□□ 2.1
USP48-210ENST00000489108 MAGI3Q5TCQ9 1506 aa28.12■■■□□ 2.09
USP48-210ENST00000489108 CFAP43Q8NDM7 1665 aa28.08■■■□□ 2.09
USP48-210ENST00000489108 ABCA8O94911 1581 aa28.04■■■□□ 2.08
USP48-210ENST00000489108 CTTNBP2Q8WZ74 1663 aa28.02■■■□□ 2.08
USP48-210ENST00000489108 GOLGA3Q08378 1498 aa28.02■■■□□ 2.08
USP48-210ENST00000489108 KIF21BO75037 1637 aa28■■■□□ 2.07
USP48-210ENST00000489108 ARID3CA6NKF2 412 aa27.93■■■□□ 2.06
USP48-210ENST00000489108 FBXO41Q8TF61 875 aa27.93■■■□□ 2.06
USP48-210ENST00000489108 ARAP3Q8WWN8 1544 aa27.92■■■□□ 2.06
USP48-210ENST00000489108 P3H3Q8IVL6 736 aa27.86■■■□□ 2.05
USP48-210ENST00000489108 ATP10BO94823 1461 aa27.85■■■□□ 2.05
USP48-210ENST00000489108 RAPGEF3O95398 923 aa27.83■■■□□ 2.05
USP48-210ENST00000489108 FAM9AQ8IZU1 332 aaPredicted RBP27.83■■■□□ 2.05
USP48-210ENST00000489108 PTPRMP28827 1452 aa27.83■■■□□ 2.04
USP48-210ENST00000489108 ADAMTSL3P82987 1691 aa27.81■■■□□ 2.04
USP48-210ENST00000489108 PRXQ9BXM0 1461 aa27.81■■■□□ 2.04
USP48-210ENST00000489108 PHLDB1Q86UU1 1377 aa27.8■■■□□ 2.04
USP48-210ENST00000489108 ABCA9Q8IUA7 1624 aa27.77■■■□□ 2.04
USP48-210ENST00000489108 ARID4BQ4LE39 1312 aaPredicted RBP27.72■■■□□ 2.03
USP48-210ENST00000489108 NEO1Q92859 1461 aa27.7■■■□□ 2.02
USP48-210ENST00000489108 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.69■■■□□ 2.02
USP48-210ENST00000489108 HNRNPUL2Q1KMD3 747 aaKnown RBP27.69■■■□□ 2.02
USP48-210ENST00000489108 BCORL1Q5H9F3 1711 aa27.69■■■□□ 2.02
USP48-210ENST00000489108 MADDQ8WXG6 1647 aa27.65■■■□□ 2.02
USP48-210ENST00000489108 PCF11O94913 1555 aaKnown RBP27.64■■■□□ 2.01
USP48-210ENST00000489108 FRMPD1Q5SYB0 1578 aa27.64■■■□□ 2.01
USP48-210ENST00000489108 RAPGEF6Q8TEU7 1601 aa27.62■■■□□ 2.01
USP48-210ENST00000489108 LMTK3Q96Q04 1460 aa27.62■■■□□ 2.01
USP48-210ENST00000489108 SAMD9Q5K651 1589 aa27.58■■■□□ 2.01
USP48-210ENST00000489108 RIMS1Q86UR5 1692 aaKnown RBP27.55■■■□□ 2
USP48-210ENST00000489108 HSPA2P54652 639 aa27.54■■■□□ 2
USP48-210ENST00000489108 PLPPR3Q6T4P5 718 aa27.54■■■□□ 2
USP48-210ENST00000489108 NUP153P49790 1475 aaKnown RBP27.53■■■□□ 2
USP48-210ENST00000489108 DENND4BO75064 1496 aaPredicted RBP27.52■■■□□ 2
USP48-210ENST00000489108 RANGAP1P46060 587 aaPredicted RBP27.52■■■□□ 2
USP48-210ENST00000489108 CSRNP3Q8WYN3 585 aa27.52■■■□□ 2
USP48-210ENST00000489108 PLEKHD1A6NEE1 506 aa27.51■■□□□ 1.99
USP48-210ENST00000489108 ARHGEF40Q8TER5 1519 aa27.51■■□□□ 1.99
USP48-210ENST00000489108 AKNAQ7Z591 1439 aa27.5■■□□□ 1.99
USP48-210ENST00000489108 RICTORQ6R327 1708 aa27.49■■□□□ 1.99
USP48-210ENST00000489108 FHOD3Q2V2M9 1422 aa27.46■■□□□ 1.99
USP48-210ENST00000489108 FANCAO15360 1455 aa27.44■■□□□ 1.98
USP48-210ENST00000489108 POGZQ7Z3K3 1410 aa27.42■■□□□ 1.98
USP48-210ENST00000489108 MLECQ14165 292 aa27.4■■□□□ 1.98
USP48-210ENST00000489108 CERKQ8TCT0 537 aa27.4■■□□□ 1.98
USP48-210ENST00000489108 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.4■■□□□ 1.98
USP48-210ENST00000489108 YEATS2Q9ULM3 1422 aa27.4■■□□□ 1.98
USP48-210ENST00000489108 SIGLEC1Q9BZZ2 1709 aa27.39■■□□□ 1.98
USP48-210ENST00000489108 CFAP74Q9C0B2 1584 aa27.37■■□□□ 1.97
USP48-210ENST00000489108 ZMYM4Q5VZL5 1548 aa27.36■■□□□ 1.97
USP48-210ENST00000489108 ZFYVE16Q7Z3T8 1539 aa27.36■■□□□ 1.97
USP48-210ENST00000489108 TTC37Q6PGP7 1564 aa27.34■■□□□ 1.97
USP48-210ENST00000489108 EFCAB5A4FU69 1503 aa27.33■■□□□ 1.97
USP48-210ENST00000489108 MAGI2Q86UL8 1455 aa27.31■■□□□ 1.96
USP48-210ENST00000489108 HECW1Q76N89 1606 aa27.3■■□□□ 1.96
USP48-210ENST00000489108 FER1L4A9Z1Z3 1794 aa27.28■■□□□ 1.96
USP48-210ENST00000489108 SCAPERQ9BY12 1400 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms