RNA–Protein interactions for RNA: ENST00000488683.1

CLIC4-202, Transcript of chloride intracellular channel 4, humanhuman

TSL 2

Gene CLIC4, Length 2,723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-202ENST00000488683 POLA1P09884 1462 aaPredicted RBP18.65■□□□□ 0.58
CLIC4-202ENST00000488683 DNAJC5BQ9UF47 199 aa18.64■□□□□ 0.57
CLIC4-202ENST00000488683 CLSPNQ9HAW4 1339 aa18.64■□□□□ 0.57
CLIC4-202ENST00000488683 ABCA10Q8WWZ4 1543 aa18.62■□□□□ 0.57
CLIC4-202ENST00000488683 FAM50AQ14320 339 aaKnown RBP18.61■□□□□ 0.57
CLIC4-202ENST00000488683 MAP3K1Q13233 1512 aa18.6■□□□□ 0.57
CLIC4-202ENST00000488683 PCF11O94913 1555 aaKnown RBP18.6■□□□□ 0.57
CLIC4-202ENST00000488683 LRRC9Q6ZRR7 1453 aa18.6■□□□□ 0.57
CLIC4-202ENST00000488683 PHLDB1Q86UU1 1377 aa18.57■□□□□ 0.56
CLIC4-202ENST00000488683 FHOD3Q2V2M9 1422 aa18.56■□□□□ 0.56
CLIC4-202ENST00000488683 CFAP43Q8NDM7 1665 aa18.55■□□□□ 0.56
CLIC4-202ENST00000488683 RAB3GAP2Q9H2M9 1393 aa18.54■□□□□ 0.56
CLIC4-202ENST00000488683 FHAD1B1AJZ9 1412 aa18.54■□□□□ 0.56
CLIC4-202ENST00000488683 SIN3AQ96ST3 1273 aa18.53■□□□□ 0.56
CLIC4-202ENST00000488683 URB2Q14146 1524 aaKnown RBP18.52■□□□□ 0.56
CLIC4-202ENST00000488683 WDR97A6NE52 1622 aa18.5■□□□□ 0.55
CLIC4-202ENST00000488683 CUL7Q14999 1698 aa18.5■□□□□ 0.55
CLIC4-202ENST00000488683 HIRIP3Q9BW71 556 aaPredicted RBP18.5■□□□□ 0.55
CLIC4-202ENST00000488683 CTTNBP2Q8WZ74 1663 aa18.5■□□□□ 0.55
CLIC4-202ENST00000488683 MAPKBP1O60336 1514 aa18.49■□□□□ 0.55
CLIC4-202ENST00000488683 KCNH8Q96L42 1107 aa18.48■□□□□ 0.55
CLIC4-202ENST00000488683 LAMC3Q9Y6N6 1575 aa18.47■□□□□ 0.55
CLIC4-202ENST00000488683 PELP1Q8IZL8 1130 aaKnown RBP18.46■□□□□ 0.55
CLIC4-202ENST00000488683 EFCAB5A4FU69 1503 aa18.46■□□□□ 0.55
CLIC4-202ENST00000488683 TDRD9Q8NDG6 1382 aaKnown RBP18.45■□□□□ 0.54
CLIC4-202ENST00000488683 FYCO1Q9BQS8 1478 aa18.45■□□□□ 0.54
CLIC4-202ENST00000488683 SETD5Q9C0A6 1442 aa18.44■□□□□ 0.54
CLIC4-202ENST00000488683 CASKIN1Q8WXD9 1431 aa18.43■□□□□ 0.54
CLIC4-202ENST00000488683 ABCA5Q8WWZ7 1642 aa18.42■□□□□ 0.54
CLIC4-202ENST00000488683 ARID3CA6NKF2 412 aa18.4■□□□□ 0.54
CLIC4-202ENST00000488683 AQRO60306 1485 aaKnown RBP eCLIP18.39■□□□□ 0.53
CLIC4-202ENST00000488683 KIF21AQ7Z4S6 1674 aa18.38■□□□□ 0.53
CLIC4-202ENST00000488683 SNAPC4Q5SXM2 1469 aa18.38■□□□□ 0.53
CLIC4-202ENST00000488683 LRRIQ1Q96JM4 1722 aa18.37■□□□□ 0.53
CLIC4-202ENST00000488683 GAPVD1Q14C86 1478 aa18.37■□□□□ 0.53
CLIC4-202ENST00000488683 SAMD9Q5K651 1589 aa18.34■□□□□ 0.53
CLIC4-202ENST00000488683 FMN1Q68DA7 1419 aa18.34■□□□□ 0.53
CLIC4-202ENST00000488683 PDS5BQ9NTI5 1447 aa18.33■□□□□ 0.52
CLIC4-202ENST00000488683 DDX10Q13206 875 aaKnown RBP18.31■□□□□ 0.52
CLIC4-202ENST00000488683 FGD6Q6ZV73 1430 aa18.29■□□□□ 0.52
CLIC4-202ENST00000488683 TARBP1Q13395 1621 aaKnown RBP18.29■□□□□ 0.52
CLIC4-202ENST00000488683 MTUS2Q5JR59 1369 aa18.26■□□□□ 0.51
CLIC4-202ENST00000488683 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.26■□□□□ 0.512e-6■■□□□ 13.2
CLIC4-202ENST00000488683 GRIN2BQ13224 1484 aa18.26■□□□□ 0.51
CLIC4-202ENST00000488683 PTPRKQ15262 1439 aa18.25■□□□□ 0.51
CLIC4-202ENST00000488683 CHIC2Q9UKJ5 165 aa18.24■□□□□ 0.51
CLIC4-202ENST00000488683 NCOA2Q15596 1464 aa18.22■□□□□ 0.51
CLIC4-202ENST00000488683 PBRM1Q86U86 1689 aa18.21■□□□□ 0.51
CLIC4-202ENST00000488683 MAGI3Q5TCQ9 1506 aa18.2■□□□□ 0.5
CLIC4-202ENST00000488683 CCDC18Q5T9S5 1454 aa18.18■□□□□ 0.5
CLIC4-202ENST00000488683 RRP7BPQ9NSQ0 103 aa18.18■□□□□ 0.5
CLIC4-202ENST00000488683 MYOM3Q5VTT5 1437 aa18.17■□□□□ 0.5
CLIC4-202ENST00000488683 SUPT6HQ7KZ85 1726 aaKnown RBP18.17■□□□□ 0.5
CLIC4-202ENST00000488683 THOC2Q8NI27 1593 aaKnown RBP18.17■□□□□ 0.5
CLIC4-202ENST00000488683 PTPN23Q9H3S7 1636 aa18.16■□□□□ 0.5
CLIC4-202ENST00000488683 HFM1A2PYH4 1435 aa18.15■□□□□ 0.5
CLIC4-202ENST00000488683 EHBP1L1Q8N3D4 1523 aa18.15■□□□□ 0.5
CLIC4-202ENST00000488683 SUPT16HQ9Y5B9 1047 aaKnown RBP18.14■□□□□ 0.5
CLIC4-202ENST00000488683 BCANQ96GW7 911 aa18.14■□□□□ 0.49
CLIC4-202ENST00000488683 ADAMTS12P58397 1594 aa18.13■□□□□ 0.49
CLIC4-202ENST00000488683 UGGT2Q9NYU1 1516 aa18.13■□□□□ 0.49
CLIC4-202ENST00000488683 NAIPQ13075 1403 aa18.12■□□□□ 0.49
CLIC4-202ENST00000488683 PPP1R15AO75807 674 aaPredicted RBP18.12■□□□□ 0.49
CLIC4-202ENST00000488683 ARHGEF11O15085 1522 aa18.12■□□□□ 0.49
CLIC4-202ENST00000488683 IQGAP2Q13576 1575 aa18.11■□□□□ 0.49
CLIC4-202ENST00000488683 FOXD1Q16676 465 aa18.1■□□□□ 0.49
CLIC4-202ENST00000488683 TIMELESSQ9UNS1 1208 aa18.1■□□□□ 0.49
CLIC4-202ENST00000488683 UACAQ9BZF9 1416 aa18.1■□□□□ 0.49
CLIC4-202ENST00000488683 MRC2Q9UBG0 1479 aa18.08■□□□□ 0.49
CLIC4-202ENST00000488683 TRIM52Q96A61 297 aa18.08■□□□□ 0.48
CLIC4-202ENST00000488683 CDK13Q14004 1512 aaKnown RBP18.07■□□□□ 0.48
CLIC4-202ENST00000488683 HECW1Q76N89 1606 aa18.07■□□□□ 0.48
CLIC4-202ENST00000488683 ZNF608Q9ULD9 1512 aaPredicted RBP18.07■□□□□ 0.48
CLIC4-202ENST00000488683 EPRSP07814 1512 aaKnown RBP18.06■□□□□ 0.48
CLIC4-202ENST00000488683 TONSLQ96HA7 1378 aa18.05■□□□□ 0.48
CLIC4-202ENST00000488683 WDR62O43379 1518 aa18.03■□□□□ 0.48
CLIC4-202ENST00000488683 TCOF1Q13428 1488 aaKnown RBP18.01■□□□□ 0.47
CLIC4-202ENST00000488683 KDM6BO15054 1643 aa18.01■□□□□ 0.47
CLIC4-202ENST00000488683 KDM5BQ9UGL1 1544 aa17.99■□□□□ 0.47
CLIC4-202ENST00000488683 DENND4BO75064 1496 aaPredicted RBP17.99■□□□□ 0.47
CLIC4-202ENST00000488683 GCC2Q8IWJ2 1684 aa17.99■□□□□ 0.47
CLIC4-202ENST00000488683 ZNF644Q9H582 1327 aaPredicted RBP17.97■□□□□ 0.47
CLIC4-202ENST00000488683 IFT140Q96RY7 1462 aa17.95■□□□□ 0.46
CLIC4-202ENST00000488683 DISP1Q96F81 1524 aa17.94■□□□□ 0.46
CLIC4-202ENST00000488683 FKBP8Q14318 412 aa17.94■□□□□ 0.46
CLIC4-202ENST00000488683 KIAA0556O60303 1618 aa17.93■□□□□ 0.46
CLIC4-202ENST00000488683 CNGB1Q14028 1251 aaPredicted RBP17.92■□□□□ 0.46
CLIC4-202ENST00000488683 ANP32CO43423 234 aa17.92■□□□□ 0.46
CLIC4-202ENST00000488683 FBLN2P98095 1184 aa17.92■□□□□ 0.46
CLIC4-202ENST00000488683 MIA2Q96PC5 1412 aa17.91■□□□□ 0.46
CLIC4-202ENST00000488683 EIF4G3O43432 1585 aaKnown RBP17.91■□□□□ 0.46
CLIC4-202ENST00000488683 KIAA0586Q9BVV6 1533 aa17.9■□□□□ 0.46
CLIC4-202ENST00000488683 NUP153P49790 1475 aaKnown RBP17.9■□□□□ 0.46
CLIC4-202ENST00000488683 AKNAQ7Z591 1439 aa17.89■□□□□ 0.45
CLIC4-202ENST00000488683 GRIN2AQ12879 1464 aa17.88■□□□□ 0.45
CLIC4-202ENST00000488683 HSPA5P11021 654 aaKnown RBP17.86■□□□□ 0.45
CLIC4-202ENST00000488683 RAPGEF6Q8TEU7 1601 aa17.86■□□□□ 0.45
CLIC4-202ENST00000488683 MPHOSPH9Q99550 1183 aa17.85■□□□□ 0.45
CLIC4-202ENST00000488683 ZNF777Q9ULD5 760 aaPredicted RBP17.85■□□□□ 0.45
CLIC4-202ENST00000488683 DAPK1P53355 1430 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms