RNA–Protein interactions for RNA: ENST00000487674.1

PRKCB-208, Transcript of protein kinase C beta, humanhuman

TSL 2

Gene PRKCB, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-208ENST00000487674 GAPVD1Q14C86 1478 aa15.41■□□□□ 0.06
PRKCB-208ENST00000487674 SUPT5HO00267 1087 aaKnown RBP15.41■□□□□ 0.06
PRKCB-208ENST00000487674 CHMP7Q8WUX9 453 aaPredicted RBP15.4■□□□□ 0.06
PRKCB-208ENST00000487674 RNF216Q9NWF9 866 aaPredicted RBP15.39■□□□□ 0.05
PRKCB-208ENST00000487674 BIVM-ERCC5R4GMW8 1640 aa15.36■□□□□ 0.05
PRKCB-208ENST00000487674 TOP2BQ02880 1626 aa15.35■□□□□ 0.05
PRKCB-208ENST00000487674 WRNQ14191 1432 aaPredicted RBP eCLIP15.34■□□□□ 0.05
PRKCB-208ENST00000487674 RNF39Q9H2S5 420 aa15.34■□□□□ 0.05
PRKCB-208ENST00000487674 ADAMTS12P58397 1594 aa15.31■□□□□ 0.04
PRKCB-208ENST00000487674 GRIN2AQ12879 1464 aa15.29■□□□□ 0.04
PRKCB-208ENST00000487674 TRHP20396 242 aaPredicted RBP15.26■□□□□ 0.03
PRKCB-208ENST00000487674 CEP170Q5SW79 1584 aa15.24■□□□□ 0.03
PRKCB-208ENST00000487674 ERICH3Q5RHP9 1530 aa15.24■□□□□ 0.03
PRKCB-208ENST00000487674 NUP160Q12769 1436 aa15.24■□□□□ 0.03
PRKCB-208ENST00000487674 FHAD1B1AJZ9 1412 aa15.22■□□□□ 0.03
PRKCB-208ENST00000487674 SHROOM2Q13796 1616 aa15.21■□□□□ 0.02
PRKCB-208ENST00000487674 ERCC6L2Q5T890 1561 aa15.19■□□□□ 0.02
PRKCB-208ENST00000487674 RUSC2Q8N2Y8 1516 aa15.1■□□□□ 0.01
PRKCB-208ENST00000487674 C1QBPQ07021 282 aaKnown RBP15.07■□□□□ 0
PRKCB-208ENST00000487674 PRG4Q92954 1404 aaPredicted RBP15.06■□□□□ 0
PRKCB-208ENST00000487674 CUL7Q14999 1698 aa15.04■□□□□ -0
PRKCB-208ENST00000487674 NCBP3Q53F19 620 aaKnown RBP15.03■□□□□ -0
PRKCB-208ENST00000487674 KIF27Q86VH2 1401 aa15.01□□□□□ -0.01
PRKCB-208ENST00000487674 JPH4Q96JJ6 628 aa15□□□□□ -0.01
PRKCB-208ENST00000487674 KIF13AQ9H1H9 1805 aa14.98□□□□□ -0.01
PRKCB-208ENST00000487674 IGF1RP08069 1367 aa14.98□□□□□ -0.01
PRKCB-208ENST00000487674 KIAA0586Q9BVV6 1533 aa14.97□□□□□ -0.01
PRKCB-208ENST00000487674 MAPKBP1O60336 1514 aa14.93□□□□□ -0.02
PRKCB-208ENST00000487674 ADCY10Q96PN6 1610 aa14.93□□□□□ -0.02
PRKCB-208ENST00000487674 ABCC10Q5T3U5 1492 aa14.89□□□□□ -0.03
PRKCB-208ENST00000487674 CARMIL1Q5VZK9 1371 aa14.88□□□□□ -0.03
PRKCB-208ENST00000487674 NPM3O75607 178 aaKnown RBP14.88□□□□□ -0.03
PRKCB-208ENST00000487674 DIP2BQ9P265 1576 aa14.88□□□□□ -0.03
PRKCB-208ENST00000487674 NPM1P06748 294 aaKnown RBP eCLIP14.86□□□□□ -0.03
PRKCB-208ENST00000487674 IQGAP2Q13576 1575 aa14.85□□□□□ -0.03
PRKCB-208ENST00000487674 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.83□□□□□ -0.04
PRKCB-208ENST00000487674 CARMIL2Q6F5E8 1435 aa14.83□□□□□ -0.04
PRKCB-208ENST00000487674 FAM69CQ0P6D2 419 aa14.81□□□□□ -0.04
PRKCB-208ENST00000487674 PTPRGP23470 1445 aa14.81□□□□□ -0.04
PRKCB-208ENST00000487674 TNIKQ9UKE5 1360 aa14.8□□□□□ -0.04
PRKCB-208ENST00000487674 ABCC2Q92887 1545 aa14.78□□□□□ -0.04
PRKCB-208ENST00000487674 RAPGEF2Q9Y4G8 1499 aa14.77□□□□□ -0.04
PRKCB-208ENST00000487674 DISP1Q96F81 1524 aa14.76□□□□□ -0.05
PRKCB-208ENST00000487674 UGGT2Q9NYU1 1516 aa14.76□□□□□ -0.05
PRKCB-208ENST00000487674 UHRF1BP1LA0JNW5 1464 aa14.76□□□□□ -0.05
PRKCB-208ENST00000487674 KDM6BO15054 1643 aa14.74□□□□□ -0.05
PRKCB-208ENST00000487674 TSPOAP1O95153 1857 aa14.74□□□□□ -0.05
PRKCB-208ENST00000487674 KIAA0556O60303 1618 aa14.73□□□□□ -0.05
PRKCB-208ENST00000487674 CTTNBP2Q8WZ74 1663 aa14.71□□□□□ -0.05
PRKCB-208ENST00000487674 TTBK1Q5TCY1 1321 aaPredicted RBP14.71□□□□□ -0.05
PRKCB-208ENST00000487674 PLB1Q6P1J6 1458 aa14.71□□□□□ -0.05
PRKCB-208ENST00000487674 ASXL2Q76L83 1435 aa14.71□□□□□ -0.05
PRKCB-208ENST00000487674 UACAQ9BZF9 1416 aa14.71□□□□□ -0.05
PRKCB-208ENST00000487674 GLI2P10070 1586 aa14.71□□□□□ -0.05
PRKCB-208ENST00000487674 KDM5BQ9UGL1 1544 aa14.67□□□□□ -0.06
PRKCB-208ENST00000487674 PPRC1Q5VV67 1664 aaKnown RBP14.67□□□□□ -0.06
PRKCB-208ENST00000487674 ZCCHC11Q5TAX3 1644 aaKnown RBP14.66□□□□□ -0.06
PRKCB-208ENST00000487674 MAP3K4Q9Y6R4 1608 aa14.63□□□□□ -0.07
PRKCB-208ENST00000487674 EPRSP07814 1512 aaKnown RBP14.63□□□□□ -0.07
PRKCB-208ENST00000487674 GOLGA3Q08378 1498 aa14.63□□□□□ -0.07
PRKCB-208ENST00000487674 PRXQ9BXM0 1461 aa14.63□□□□□ -0.07
PRKCB-208ENST00000487674 TEX14Q8IWB6 1497 aa14.58□□□□□ -0.08
PRKCB-208ENST00000487674 WDR7Q9Y4E6 1490 aa14.58□□□□□ -0.08
PRKCB-208ENST00000487674 ABCA8O94911 1581 aa14.58□□□□□ -0.08
PRKCB-208ENST00000487674 CFAP43Q8NDM7 1665 aa14.52□□□□□ -0.08
PRKCB-208ENST00000487674 KDM4FA0A1W2PPD8 638 aa14.52□□□□□ -0.09
PRKCB-208ENST00000487674 U3KPZ7 1027 aaPredicted RBP14.52□□□□□ -0.09
PRKCB-208ENST00000487674 COL17A1Q9UMD9 1497 aaPredicted RBP14.51□□□□□ -0.09
PRKCB-208ENST00000487674 SAMD9Q5K651 1589 aa14.49□□□□□ -0.09
PRKCB-208ENST00000487674 MAGI3Q5TCQ9 1506 aa14.49□□□□□ -0.09
PRKCB-208ENST00000487674 ADGRL1O94910 1474 aa14.47□□□□□ -0.09
PRKCB-208ENST00000487674 EEA1Q15075 1411 aa14.46□□□□□ -0.09
PRKCB-208ENST00000487674 CD109Q6YHK3 1445 aa14.46□□□□□ -0.09
PRKCB-208ENST00000487674 CSRNP3Q8WYN3 585 aa14.44□□□□□ -0.1
PRKCB-208ENST00000487674 KCNA4P22459 653 aa14.43□□□□□ -0.1
PRKCB-208ENST00000487674 FAM9AQ8IZU1 332 aaPredicted RBP14.43□□□□□ -0.1
PRKCB-208ENST00000487674 RAPGEF6Q8TEU7 1601 aa14.43□□□□□ -0.1
PRKCB-208ENST00000487674 ATP10BO94823 1461 aa14.42□□□□□ -0.1
PRKCB-208ENST00000487674 ABCA9Q8IUA7 1624 aa14.41□□□□□ -0.1
PRKCB-208ENST00000487674 KCNH8Q96L42 1107 aa14.4□□□□□ -0.1
PRKCB-208ENST00000487674 P3H3Q8IVL6 736 aa14.39□□□□□ -0.11
PRKCB-208ENST00000487674 SPINK5Q9NQ38 1064 aaPredicted RBP14.39□□□□□ -0.11
PRKCB-208ENST00000487674 ARAP3Q8WWN8 1544 aa14.37□□□□□ -0.11
PRKCB-208ENST00000487674 KIF21BO75037 1637 aa14.37□□□□□ -0.11
PRKCB-208ENST00000487674 ARID3CA6NKF2 412 aa14.36□□□□□ -0.11
PRKCB-208ENST00000487674 NUP153P49790 1475 aaKnown RBP14.36□□□□□ -0.11
PRKCB-208ENST00000487674 EFCAB5A4FU69 1503 aa14.35□□□□□ -0.11
PRKCB-208ENST00000487674 FHOD3Q2V2M9 1422 aa14.33□□□□□ -0.11
PRKCB-208ENST00000487674 CAPN15O75808 1086 aa14.33□□□□□ -0.12
PRKCB-208ENST00000487674 PHLDB1Q86UU1 1377 aa14.33□□□□□ -0.12
PRKCB-208ENST00000487674 NEO1Q92859 1461 aa14.31□□□□□ -0.12
PRKCB-208ENST00000487674 DSG3P32926 999 aa14.31□□□□□ -0.12
PRKCB-208ENST00000487674 HECW2Q9P2P5 1572 aa14.29□□□□□ -0.12
PRKCB-208ENST00000487674 SLC4A2P04920 1241 aa14.28□□□□□ -0.12
PRKCB-208ENST00000487674 FRMPD1Q5SYB0 1578 aa14.27□□□□□ -0.12
PRKCB-208ENST00000487674 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.27□□□□□ -0.13
PRKCB-208ENST00000487674 RANGAP1P46060 587 aaPredicted RBP14.27□□□□□ -0.13
PRKCB-208ENST00000487674 HNRNPUL2Q1KMD3 747 aaKnown RBP14.27□□□□□ -0.13
PRKCB-208ENST00000487674 CFAP74Q9C0B2 1584 aa14.26□□□□□ -0.13
PRKCB-208ENST00000487674 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms