RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 FHOD3Q2V2M9 1422 aa18.5■□□□□ 0.55
HMGN1-216ENST00000486741 FANCD2Q9BXW9 1451 aa18.49■□□□□ 0.55
HMGN1-216ENST00000486741 IGF1RP08069 1367 aa18.48■□□□□ 0.55
HMGN1-216ENST00000486741 FHAD1B1AJZ9 1412 aa18.48■□□□□ 0.55
HMGN1-216ENST00000486741 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.48■□□□□ 0.551e-6■■□□□ 12.8
HMGN1-216ENST00000486741 SLC4A1APQ9BWU0 796 aaKnown RBP18.47■□□□□ 0.55
HMGN1-216ENST00000486741 ERCC6Q03468 1493 aa18.47■□□□□ 0.55
HMGN1-216ENST00000486741 RAD54L2Q9Y4B4 1467 aa18.46■□□□□ 0.55
HMGN1-216ENST00000486741 PDS5BQ9NTI5 1447 aa18.45■□□□□ 0.54
HMGN1-216ENST00000486741 ERICH6Q7L0X2 663 aa18.45■□□□□ 0.54
HMGN1-216ENST00000486741 KCNH8Q96L42 1107 aa18.45■□□□□ 0.54
HMGN1-216ENST00000486741 DNAJC5BQ9UF47 199 aa18.43■□□□□ 0.54
HMGN1-216ENST00000486741 KDM2AQ9Y2K7 1162 aa18.43■□□□□ 0.54
HMGN1-216ENST00000486741 FGD5Q6ZNL6 1462 aa18.43■□□□□ 0.54
HMGN1-216ENST00000486741 UNC13AQ9UPW8 1703 aa18.41■□□□□ 0.54
HMGN1-216ENST00000486741 CFDP1Q9UEE9 299 aaPredicted RBP18.41■□□□□ 0.54
HMGN1-216ENST00000486741 TSPY4P0CV99 314 aa18.41■□□□□ 0.54
HMGN1-216ENST00000486741 TSPY10P0CW01 314 aa18.41■□□□□ 0.54
HMGN1-216ENST00000486741 RAB3GAP2Q9H2M9 1393 aa18.4■□□□□ 0.54
HMGN1-216ENST00000486741 PLEKHD1A6NEE1 506 aa18.4■□□□□ 0.54
HMGN1-216ENST00000486741 NESP48681 1621 aa18.37■□□□□ 0.53
HMGN1-216ENST00000486741 CFTRP13569 1480 aa18.36■□□□□ 0.53
HMGN1-216ENST00000486741 FOXD1Q16676 465 aa18.36■□□□□ 0.53
HMGN1-216ENST00000486741 FAM9BQ8IZU0 186 aa18.35■□□□□ 0.53
HMGN1-216ENST00000486741 HNRNPUQ00839 825 aaKnown RBP eCLIP18.35■□□□□ 0.53
HMGN1-216ENST00000486741 KIF21BO75037 1637 aa18.35■□□□□ 0.53
HMGN1-216ENST00000486741 SETD5Q9C0A6 1442 aa18.34■□□□□ 0.53
HMGN1-216ENST00000486741 CLSPNQ9HAW4 1339 aa18.33■□□□□ 0.52
HMGN1-216ENST00000486741 FKBP8Q14318 412 aa18.32■□□□□ 0.52
HMGN1-216ENST00000486741 SENP3-EIF4A1A0A087X0R7 540 aa18.32■□□□□ 0.52
HMGN1-216ENST00000486741 CUX1P39880 1505 aa18.31■□□□□ 0.52
HMGN1-216ENST00000486741 ARHGAP35Q9NRY4 1499 aa18.31■□□□□ 0.52
HMGN1-216ENST00000486741 ARAP1Q96P48 1450 aa18.3■□□□□ 0.52
HMGN1-216ENST00000486741 DHX57Q6P158 1386 aaKnown RBP18.28■□□□□ 0.52
HMGN1-216ENST00000486741 EIF4G2P78344 907 aaKnown RBP eCLIP18.28■□□□□ 0.521e-6■□□□□ 9.4
HMGN1-216ENST00000486741 RGL3Q3MIN7 710 aa18.27■□□□□ 0.52
HMGN1-216ENST00000486741 FMN1Q68DA7 1419 aa18.26■□□□□ 0.51
HMGN1-216ENST00000486741 SALL2Q9Y467 1007 aaPredicted RBP18.24■□□□□ 0.51
HMGN1-216ENST00000486741 CHGAP10645 457 aaKnown RBP18.24■□□□□ 0.51
HMGN1-216ENST00000486741 TOP2BQ02880 1626 aa18.24■□□□□ 0.51
HMGN1-216ENST00000486741 PRXQ9BXM0 1461 aa18.23■□□□□ 0.51
HMGN1-216ENST00000486741 CC2D2AQ9P2K1 1620 aa18.23■□□□□ 0.51
HMGN1-216ENST00000486741 SENP3Q9H4L4 574 aaPredicted RBP18.21■□□□□ 0.51
HMGN1-216ENST00000486741 IRX6P78412 446 aaPredicted RBP18.2■□□□□ 0.5
HMGN1-216ENST00000486741 HMGXB3Q12766 1538 aa18.2■□□□□ 0.5
HMGN1-216ENST00000486741 MRS2Q9HD23 443 aa18.2■□□□□ 0.5
HMGN1-216ENST00000486741 AQRO60306 1485 aaKnown RBP eCLIP18.18■□□□□ 0.52e-11■■■■■ 27.4
HMGN1-216ENST00000486741 PHLDB1Q86UU1 1377 aa18.18■□□□□ 0.5
HMGN1-216ENST00000486741 GAPVD1Q14C86 1478 aa18.17■□□□□ 0.5
HMGN1-216ENST00000486741 NPM1P06748 294 aaKnown RBP eCLIP18.16■□□□□ 0.5
HMGN1-216ENST00000486741 PEG3Q9GZU2 1588 aa18.14■□□□□ 0.49
HMGN1-216ENST00000486741 JPH4Q96JJ6 628 aa18.13■□□□□ 0.49
HMGN1-216ENST00000486741 PPP1R15AO75807 674 aaPredicted RBP18.12■□□□□ 0.49
HMGN1-216ENST00000486741 MPHOSPH9Q99550 1183 aa18.11■□□□□ 0.49
HMGN1-216ENST00000486741 ERICH3Q5RHP9 1530 aa18.1■□□□□ 0.49
HMGN1-216ENST00000486741 POLA1P09884 1462 aaPredicted RBP18.09■□□□□ 0.49
HMGN1-216ENST00000486741 TMC1Q8TDI8 760 aa18.09■□□□□ 0.49
HMGN1-216ENST00000486741 TOPBP1Q92547 1522 aa18.07■□□□□ 0.48
HMGN1-216ENST00000486741 HSPA5P11021 654 aaKnown RBP18.06■□□□□ 0.48
HMGN1-216ENST00000486741 PKD2Q13563 968 aa18.06■□□□□ 0.48
HMGN1-216ENST00000486741 CARD11Q9BXL7 1154 aa18.05■□□□□ 0.48
HMGN1-216ENST00000486741 ZNF644Q9H582 1327 aaPredicted RBP18.05■□□□□ 0.48
HMGN1-216ENST00000486741 LRRC9Q6ZRR7 1453 aa18.04■□□□□ 0.48
HMGN1-216ENST00000486741 HNRNPMP52272 730 aaKnown RBP eCLIP18.03■□□□□ 0.48
HMGN1-216ENST00000486741 L3MBTL2Q969R5 705 aa18.03■□□□□ 0.48
HMGN1-216ENST00000486741 TIMELESSQ9UNS1 1208 aa18.03■□□□□ 0.48
HMGN1-216ENST00000486741 DCAF11Q8TEB1 546 aa18.02■□□□□ 0.48
HMGN1-216ENST00000486741 CARMIL2Q6F5E8 1435 aa18.01■□□□□ 0.47
HMGN1-216ENST00000486741 PLPPR3Q6T4P5 718 aa17.99■□□□□ 0.47
HMGN1-216ENST00000486741 SUPT16HQ9Y5B9 1047 aaKnown RBP17.97■□□□□ 0.47
HMGN1-216ENST00000486741 FGD6Q6ZV73 1430 aa17.95■□□□□ 0.46
HMGN1-216ENST00000486741 RRBP1Q9P2E9 1410 aaKnown RBP17.94■□□□□ 0.46
HMGN1-216ENST00000486741 NUP155O75694 1391 aa17.94■□□□□ 0.46
HMGN1-216ENST00000486741 CASKIN1Q8WXD9 1431 aa17.92■□□□□ 0.46
HMGN1-216ENST00000486741 CCDC18Q5T9S5 1454 aa17.91■□□□□ 0.46
HMGN1-216ENST00000486741 STAG3Q9UJ98 1225 aa17.9■□□□□ 0.46
HMGN1-216ENST00000486741 DNMBPQ6XZF7 1577 aa17.87■□□□□ 0.45
HMGN1-216ENST00000486741 NCOA2Q15596 1464 aa17.87■□□□□ 0.45
HMGN1-216ENST00000486741 MYOM3Q5VTT5 1437 aa17.87■□□□□ 0.45
HMGN1-216ENST00000486741 DAXXQ9UER7 740 aaPredicted RBP17.85■□□□□ 0.45
HMGN1-216ENST00000486741 ANKRD30AQ9BXX3 1397 aa17.84■□□□□ 0.45
HMGN1-216ENST00000486741 ABCA10Q8WWZ4 1543 aa17.84■□□□□ 0.45
HMGN1-216ENST00000486741 BIVM-ERCC5R4GMW8 1640 aa17.83■□□□□ 0.44
HMGN1-216ENST00000486741 CC2D1BQ5T0F9 858 aaKnown RBP17.82■□□□□ 0.44
HMGN1-216ENST00000486741 BCL11AQ9H165 835 aa17.82■□□□□ 0.44
HMGN1-216ENST00000486741 GRIN2BQ13224 1484 aa17.82■□□□□ 0.44
HMGN1-216ENST00000486741 TIAM1Q13009 1591 aa17.82■□□□□ 0.44
HMGN1-216ENST00000486741 PTPRGP23470 1445 aa17.81■□□□□ 0.44
HMGN1-216ENST00000486741 URB2Q14146 1524 aaKnown RBP17.81■□□□□ 0.44
HMGN1-216ENST00000486741 FYCO1Q9BQS8 1478 aa17.81■□□□□ 0.44
HMGN1-216ENST00000486741 CANXP27824 592 aaKnown RBP17.8■□□□□ 0.44
HMGN1-216ENST00000486741 ESF1Q9H501 851 aaKnown RBP17.8■□□□□ 0.44
HMGN1-216ENST00000486741 CCER2I3L3R5 266 aa17.79■□□□□ 0.44
HMGN1-216ENST00000486741 CCDC136Q96JN2 1154 aa17.79■□□□□ 0.44
HMGN1-216ENST00000486741 NPM2Q86SE8 214 aaKnown RBP17.78■□□□□ 0.44
HMGN1-216ENST00000486741 WDR43Q15061 677 aaKnown RBP eCLIP17.77■□□□□ 0.44
HMGN1-216ENST00000486741 EFCAB2Q5VUJ9 269 aa17.77■□□□□ 0.44
HMGN1-216ENST00000486741 MRC2Q9UBG0 1479 aa17.77■□□□□ 0.43
HMGN1-216ENST00000486741 GGT6Q6P531 493 aa17.76■□□□□ 0.43
HMGN1-216ENST00000486741 PRDM2Q13029 1718 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms