RNA–Protein interactions for RNA: ENST00000485749.1

RTN4-213, Transcript of reticulon 4, humanhuman

TSL 2

Gene RTN4, Length 832 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-213ENST00000485749 CCDC61Q9Y6R9 512 aa9.69□□□□□ -0.86
RTN4-213ENST00000485749 ASTLQ6HA08 431 aaPredicted RBP9.68□□□□□ -0.86
RTN4-213ENST00000485749 SLC39A7Q92504 469 aa9.68□□□□□ -0.86
RTN4-213ENST00000485749 C7P10643 843 aa9.66□□□□□ -0.86
RTN4-213ENST00000485749 FKBP8Q14318 412 aa9.66□□□□□ -0.86
RTN4-213ENST00000485749 FBXO3Q9UK99 471 aa9.64□□□□□ -0.87
RTN4-213ENST00000485749 ATMINO43313 823 aaPredicted RBP9.63□□□□□ -0.87
RTN4-213ENST00000485749 KIF12Q96FN5 646 aa9.63□□□□□ -0.87
RTN4-213ENST00000485749 METRNQ9UJH8 293 aa9.62□□□□□ -0.87
RTN4-213ENST00000485749 AMER1Q5JTC6 1135 aaPredicted RBP9.61□□□□□ -0.87
RTN4-213ENST00000485749 MAMSTRQ6ZN01 415 aa9.61□□□□□ -0.87
RTN4-213ENST00000485749 SGIP1Q9BQI5 828 aa9.6□□□□□ -0.87
RTN4-213ENST00000485749 TIE1P35590 1138 aa9.59□□□□□ -0.87
RTN4-213ENST00000485749 RASEFQ8IZ41 740 aa9.59□□□□□ -0.87
RTN4-213ENST00000485749 FAM212AQ96EL1 285 aa9.59□□□□□ -0.87
RTN4-213ENST00000485749 PELP1Q8IZL8 1130 aaKnown RBP9.57□□□□□ -0.88
RTN4-213ENST00000485749 MAP3K13O43283 966 aa9.56□□□□□ -0.88
RTN4-213ENST00000485749 OTUD5Q96G74 571 aa9.55□□□□□ -0.88
RTN4-213ENST00000485749 ATN1P54259 1190 aaPredicted RBP9.53□□□□□ -0.88
RTN4-213ENST00000485749 SCUBE2Q9NQ36 999 aa9.53□□□□□ -0.88
RTN4-213ENST00000485749 PCDHB13Q9Y5F0 798 aa9.53□□□□□ -0.88
RTN4-213ENST00000485749 NUBP1P53384 320 aa9.52□□□□□ -0.89
RTN4-213ENST00000485749 BMP2KQ9NSY1 1161 aaPredicted RBP9.52□□□□□ -0.89
RTN4-213ENST00000485749 POTEB2H3BUK9 544 aa9.51□□□□□ -0.89
RTN4-213ENST00000485749 RTN4Q9NQC3 1192 aaKnown RBP9.51□□□□□ -0.89
RTN4-213ENST00000485749 SEC24BO95487 1268 aa9.48□□□□□ -0.89
RTN4-213ENST00000485749 IER5LQ5T953 404 aa9.48□□□□□ -0.89
RTN4-213ENST00000485749 TTLL13PA6NNM8 815 aa9.46□□□□□ -0.9
RTN4-213ENST00000485749 DCAF8Q5TAQ9 597 aa9.45□□□□□ -0.9
RTN4-213ENST00000485749 KLHL34Q8N239 644 aa9.43□□□□□ -0.9
RTN4-213ENST00000485749 TRIM35Q9UPQ4 493 aa9.42□□□□□ -0.9
RTN4-213ENST00000485749 TRPC6Q9Y210 931 aa9.42□□□□□ -0.9
RTN4-213ENST00000485749 GSE1Q14687 1217 aa9.41□□□□□ -0.9
RTN4-213ENST00000485749 IFNL1Q8IU54 200 aa9.4□□□□□ -0.9
RTN4-213ENST00000485749 VASPP50552 380 aaPredicted RBP9.39□□□□□ -0.91
RTN4-213ENST00000485749 TMEM106CQ9BVX2 250 aa9.39□□□□□ -0.91
RTN4-213ENST00000485749 POTEMA6NI47 508 aa9.37□□□□□ -0.91
RTN4-213ENST00000485749 PCDH10Q9P2E7 1040 aa9.37□□□□□ -0.91
RTN4-213ENST00000485749 PLCG2P16885 1265 aa9.36□□□□□ -0.91
RTN4-213ENST00000485749 PYGBP11216 843 aa9.35□□□□□ -0.91
RTN4-213ENST00000485749 POTEJP0CG39 1038 aa9.34□□□□□ -0.91
RTN4-213ENST00000485749 POTEGQ6S5H5 508 aa9.34□□□□□ -0.91
RTN4-213ENST00000485749 ZNF467Q7Z7K2 595 aaPredicted RBP9.34□□□□□ -0.91
RTN4-213ENST00000485749 POTEFA5A3E0 1075 aa9.33□□□□□ -0.92
RTN4-213ENST00000485749 PLSCR2Q9NRY7 297 aa9.33□□□□□ -0.92
RTN4-213ENST00000485749 COLQQ9Y215 455 aaPredicted RBP9.31□□□□□ -0.92
RTN4-213ENST00000485749 GOLGA2Q08379 1002 aa9.29□□□□□ -0.92
RTN4-213ENST00000485749 FAM163AQ96GL9 167 aaPredicted RBP9.29□□□□□ -0.92
RTN4-213ENST00000485749 OCEL1Q9H607 264 aa9.28□□□□□ -0.92
RTN4-213ENST00000485749 CHRM1P11229 460 aaPredicted RBP9.27□□□□□ -0.93
RTN4-213ENST00000485749 IRX5P78411 483 aaPredicted RBP9.25□□□□□ -0.93
RTN4-213ENST00000485749 PCDHB8Q9UN66 801 aa9.25□□□□□ -0.93
RTN4-213ENST00000485749 MKRN3Q13064 507 aaKnown RBP9.24□□□□□ -0.93
RTN4-213ENST00000485749 SLAIN1Q8ND83 568 aa9.24□□□□□ -0.93
RTN4-213ENST00000485749 SPOCK2Q92563 424 aa9.24□□□□□ -0.93
RTN4-213ENST00000485749 SNPHO15079 494 aa9.21□□□□□ -0.94
RTN4-213ENST00000485749 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.21□□□□□ -0.94
RTN4-213ENST00000485749 L3MBTL3Q96JM7 780 aaPredicted RBP9.19□□□□□ -0.94
RTN4-213ENST00000485749 CIZ1Q9ULV3 898 aaPredicted RBP9.19□□□□□ -0.94
RTN4-213ENST00000485749 TRIM41Q8WV44 630 aa9.18□□□□□ -0.94
RTN4-213ENST00000485749 PSEN1P49768 467 aa9.17□□□□□ -0.94
RTN4-213ENST00000485749 PDAP1Q13442 181 aaKnown RBP9.17□□□□□ -0.94
RTN4-213ENST00000485749 C3orf67Q6ZVT6 689 aa9.16□□□□□ -0.94
RTN4-213ENST00000485749 LCE2DQ5TA82 110 aaPredicted RBP9.14□□□□□ -0.95
RTN4-213ENST00000485749 IFNLR1Q8IU57 520 aaPredicted RBP9.14□□□□□ -0.95
RTN4-213ENST00000485749 G3V3G9 751 aa9.13□□□□□ -0.95
RTN4-213ENST00000485749 TMEM121BQ9BXQ6 578 aaPredicted RBP9.13□□□□□ -0.95
RTN4-213ENST00000485749 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.13□□□□□ -0.95
RTN4-213ENST00000485749 ST18O60284 1047 aa9.09□□□□□ -0.95
RTN4-213ENST00000485749 PDCD7Q8N8D1 485 aaKnown RBP9.08□□□□□ -0.96
RTN4-213ENST00000485749 CDAN1Q8IWY9 1227 aa9.06□□□□□ -0.96
RTN4-213ENST00000485749 CABP2Q9NPB3 220 aa9.05□□□□□ -0.96
RTN4-213ENST00000485749 ILDR1Q86SU0 546 aaPredicted RBP9.01□□□□□ -0.97
RTN4-213ENST00000485749 TAOK2Q9UL54 1235 aa9□□□□□ -0.97
RTN4-213ENST00000485749 BOLA1Q9Y3E2 137 aa8.99□□□□□ -0.97
RTN4-213ENST00000485749 RIOK3O14730 519 aaKnown RBP8.94□□□□□ -0.98
RTN4-213ENST00000485749 EMP3P54852 163 aa8.94□□□□□ -0.98
RTN4-213ENST00000485749 VGFO15240 615 aaPredicted RBP8.93□□□□□ -0.98
RTN4-213ENST00000485749 RIMBP2O15034 1052 aa8.92□□□□□ -0.98
RTN4-213ENST00000485749 SOX12O15370 315 aa8.92□□□□□ -0.98
RTN4-213ENST00000485749 DPY19L2Q6NUT2 758 aa8.91□□□□□ -0.98
RTN4-213ENST00000485749 ZNF710Q8N1W2 664 aa8.91□□□□□ -0.98
RTN4-213ENST00000485749 EFCAB3Q8N7B9 438 aa8.91□□□□□ -0.98
RTN4-213ENST00000485749 MARVELD3Q96A59 401 aa8.91□□□□□ -0.98
RTN4-213ENST00000485749 DOK7Q18PE1 504 aa8.9□□□□□ -0.98
RTN4-213ENST00000485749 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.85□□□□□ -0.99
RTN4-213ENST00000485749 ZFP91Q96JP5 570 aaPredicted RBP8.85□□□□□ -0.99
RTN4-213ENST00000485749 FAM205CA6NFA0 338 aa8.84□□□□□ -0.99
RTN4-213ENST00000485749 HS3ST6Q96QI5 342 aa8.83□□□□□ -1
RTN4-213ENST00000485749 SPNS2Q8IVW8 549 aa8.82□□□□□ -1
RTN4-213ENST00000485749 MICALL2Q8IY33 904 aa8.82□□□□□ -1
RTN4-213ENST00000485749 ZSWIM6Q9HCJ5 1215 aa8.82□□□□□ -1
RTN4-213ENST00000485749 HOXB1P14653 301 aaPredicted RBP8.81□□□□□ -1
RTN4-213ENST00000485749 NLRP6P59044 892 aa8.81□□□□□ -1
RTN4-213ENST00000485749 PLCB2Q00722 1185 aa8.81□□□□□ -1
RTN4-213ENST00000485749 MMRN1Q13201 1228 aa8.8□□□□□ -1
RTN4-213ENST00000485749 RNF25Q96BH1 459 aaPredicted RBP8.8□□□□□ -1
RTN4-213ENST00000485749 HOXB3P14651 431 aaPredicted RBP8.79□□□□□ -1
RTN4-213ENST00000485749 ERBB3P21860 1342 aa8.79□□□□□ -1
RTN4-213ENST00000485749 BCL11BQ9C0K0 894 aaPredicted RBP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms