RNA–Protein interactions for RNA: ENST00000484252.5

LIMS2-215, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,099 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-215ENST00000484252 CFAP43Q8NDM7 1665 aa28.77■■■□□ 2.2
LIMS2-215ENST00000484252 TOPBP1Q92547 1522 aa28.75■■■□□ 2.19
LIMS2-215ENST00000484252 EFCAB5A4FU69 1503 aa28.73■■■□□ 2.19
LIMS2-215ENST00000484252 CUL7Q14999 1698 aa28.73■■■□□ 2.19
LIMS2-215ENST00000484252 NESP48681 1621 aa28.72■■■□□ 2.19
LIMS2-215ENST00000484252 POLA1P09884 1462 aaPredicted RBP28.72■■■□□ 2.19
LIMS2-215ENST00000484252 YTHDC1Q96MU7 727 aaKnown RBP28.71■■■□□ 2.19
LIMS2-215ENST00000484252 PCF11O94913 1555 aaKnown RBP28.7■■■□□ 2.18
LIMS2-215ENST00000484252 RAB3GAP2Q9H2M9 1393 aa28.68■■■□□ 2.18
LIMS2-215ENST00000484252 RAD54L2Q9Y4B4 1467 aa28.68■■■□□ 2.18
LIMS2-215ENST00000484252 AQRO60306 1485 aaKnown RBP eCLIP28.66■■■□□ 2.18
LIMS2-215ENST00000484252 FYCO1Q9BQS8 1478 aa28.66■■■□□ 2.18
LIMS2-215ENST00000484252 SETD5Q9C0A6 1442 aa28.64■■■□□ 2.18
LIMS2-215ENST00000484252 PHLDB1Q86UU1 1377 aa28.64■■■□□ 2.18
LIMS2-215ENST00000484252 ITGAEP38570 1179 aa28.64■■■□□ 2.18
LIMS2-215ENST00000484252 LAMC3Q9Y6N6 1575 aa28.63■■■□□ 2.17
LIMS2-215ENST00000484252 CTTNBP2Q8WZ74 1663 aa28.61■■■□□ 2.17
LIMS2-215ENST00000484252 CASKIN1Q8WXD9 1431 aa28.61■■■□□ 2.17
LIMS2-215ENST00000484252 MAPKBP1O60336 1514 aa28.59■■■□□ 2.17
LIMS2-215ENST00000484252 FHOD3Q2V2M9 1422 aa28.57■■■□□ 2.16
LIMS2-215ENST00000484252 WDR97A6NE52 1622 aa28.56■■■□□ 2.16
LIMS2-215ENST00000484252 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.55■■■□□ 2.16
LIMS2-215ENST00000484252 P3H3Q8IVL6 736 aa28.52■■■□□ 2.16
LIMS2-215ENST00000484252 FMN1Q68DA7 1419 aa28.51■■■□□ 2.15
LIMS2-215ENST00000484252 URB2Q14146 1524 aaKnown RBP28.5■■■□□ 2.15
LIMS2-215ENST00000484252 FAM50AQ14320 339 aaKnown RBP28.48■■■□□ 2.15
LIMS2-215ENST00000484252 ABCA5Q8WWZ7 1642 aa28.45■■■□□ 2.14
LIMS2-215ENST00000484252 ATP1B4Q9UN42 357 aaPredicted RBP28.43■■■□□ 2.14
LIMS2-215ENST00000484252 SNAPC4Q5SXM2 1469 aa28.41■■■□□ 2.14
LIMS2-215ENST00000484252 TIMELESSQ9UNS1 1208 aa28.4■■■□□ 2.14
LIMS2-215ENST00000484252 PDS5BQ9NTI5 1447 aa28.4■■■□□ 2.14
LIMS2-215ENST00000484252 SAMD9Q5K651 1589 aa28.39■■■□□ 2.14
LIMS2-215ENST00000484252 DNAJC5BQ9UF47 199 aa28.38■■■□□ 2.13
LIMS2-215ENST00000484252 GAPVD1Q14C86 1478 aa28.36■■■□□ 2.13
LIMS2-215ENST00000484252 FGD6Q6ZV73 1430 aa28.34■■■□□ 2.13
LIMS2-215ENST00000484252 THOC2Q8NI27 1593 aaKnown RBP28.33■■■□□ 2.13
LIMS2-215ENST00000484252 KIF21AQ7Z4S6 1674 aa28.33■■■□□ 2.12
LIMS2-215ENST00000484252 TDRD9Q8NDG6 1382 aaKnown RBP28.29■■■□□ 2.12
LIMS2-215ENST00000484252 MTUS2Q5JR59 1369 aa28.27■■■□□ 2.12
LIMS2-215ENST00000484252 GRIN2BQ13224 1484 aa28.26■■■□□ 2.11
LIMS2-215ENST00000484252 SIN3AQ96ST3 1273 aa28.22■■■□□ 2.11
LIMS2-215ENST00000484252 LRRIQ1Q96JM4 1722 aa28.19■■■□□ 2.1
LIMS2-215ENST00000484252 EHBP1L1Q8N3D4 1523 aa28.19■■■□□ 2.1
LIMS2-215ENST00000484252 HFM1A2PYH4 1435 aa28.19■■■□□ 2.1
LIMS2-215ENST00000484252 TARBP1Q13395 1621 aaKnown RBP28.18■■■□□ 2.1
LIMS2-215ENST00000484252 SUPT6HQ7KZ85 1726 aaKnown RBP28.18■■■□□ 2.1
LIMS2-215ENST00000484252 MYOM3Q5VTT5 1437 aa28.17■■■□□ 2.1
LIMS2-215ENST00000484252 NCOA2Q15596 1464 aa28.17■■■□□ 2.1
LIMS2-215ENST00000484252 CCDC18Q5T9S5 1454 aa28.16■■■□□ 2.1
LIMS2-215ENST00000484252 UACAQ9BZF9 1416 aa28.13■■■□□ 2.09
LIMS2-215ENST00000484252 PTPN23Q9H3S7 1636 aa28.13■■■□□ 2.09
LIMS2-215ENST00000484252 PPP1R15AO75807 674 aaPredicted RBP28.12■■■□□ 2.09
LIMS2-215ENST00000484252 PTPRKQ15262 1439 aa28.09■■■□□ 2.09
LIMS2-215ENST00000484252 ARHGEF11O15085 1522 aa28.09■■■□□ 2.09
LIMS2-215ENST00000484252 UGGT2Q9NYU1 1516 aa28.08■■■□□ 2.09
LIMS2-215ENST00000484252 PBRM1Q86U86 1689 aa28.06■■■□□ 2.08
LIMS2-215ENST00000484252 NAIPQ13075 1403 aa28.05■■■□□ 2.08
LIMS2-215ENST00000484252 HECW1Q76N89 1606 aa28.04■■■□□ 2.08
LIMS2-215ENST00000484252 TONSLQ96HA7 1378 aa28.02■■■□□ 2.08
LIMS2-215ENST00000484252 IQGAP2Q13576 1575 aa28■■■□□ 2.07
LIMS2-215ENST00000484252 TCOF1Q13428 1488 aaKnown RBP28■■■□□ 2.07
LIMS2-215ENST00000484252 MRC2Q9UBG0 1479 aa27.99■■■□□ 2.07
LIMS2-215ENST00000484252 ADAMTS12P58397 1594 aa27.99■■■□□ 2.07
LIMS2-215ENST00000484252 DDX10Q13206 875 aaKnown RBP27.99■■■□□ 2.07
LIMS2-215ENST00000484252 MAGI3Q5TCQ9 1506 aa27.97■■■□□ 2.07
LIMS2-215ENST00000484252 SUPT16HQ9Y5B9 1047 aaKnown RBP27.96■■■□□ 2.07
LIMS2-215ENST00000484252 AKNAQ7Z591 1439 aa27.93■■■□□ 2.06
LIMS2-215ENST00000484252 EPRSP07814 1512 aaKnown RBP27.92■■■□□ 2.06
LIMS2-215ENST00000484252 GCC2Q8IWJ2 1684 aa27.91■■■□□ 2.06
LIMS2-215ENST00000484252 MIA2Q96PC5 1412 aa27.89■■■□□ 2.06
LIMS2-215ENST00000484252 CCER2I3L3R5 266 aa27.88■■■□□ 2.05
LIMS2-215ENST00000484252 KCNH8Q96L42 1107 aa27.88■■■□□ 2.05
LIMS2-215ENST00000484252 WDR62O43379 1518 aa27.87■■■□□ 2.05
LIMS2-215ENST00000484252 ANP32CO43423 234 aa27.82■■■□□ 2.04
LIMS2-215ENST00000484252 IFT140Q96RY7 1462 aa27.81■■■□□ 2.04
LIMS2-215ENST00000484252 KDM5BQ9UGL1 1544 aa27.8■■■□□ 2.04
LIMS2-215ENST00000484252 CDK13Q14004 1512 aaKnown RBP27.78■■■□□ 2.04
LIMS2-215ENST00000484252 HIRIP3Q9BW71 556 aaPredicted RBP27.76■■■□□ 2.03
LIMS2-215ENST00000484252 RRP7BPQ9NSQ0 103 aa27.74■■■□□ 2.03
LIMS2-215ENST00000484252 ZNF608Q9ULD9 1512 aaPredicted RBP27.74■■■□□ 2.03
LIMS2-215ENST00000484252 KIAA0586Q9BVV6 1533 aa27.73■■■□□ 2.03
LIMS2-215ENST00000484252 KIAA0556O60303 1618 aa27.7■■■□□ 2.03
LIMS2-215ENST00000484252 DENND4BO75064 1496 aaPredicted RBP27.7■■■□□ 2.02
LIMS2-215ENST00000484252 CHIC2Q9UKJ5 165 aa27.69■■■□□ 2.02
LIMS2-215ENST00000484252 ROCK1Q13464 1354 aa27.68■■■□□ 2.02
LIMS2-215ENST00000484252 DISP1Q96F81 1524 aa27.66■■■□□ 2.02
LIMS2-215ENST00000484252 KDM6BO15054 1643 aa27.66■■■□□ 2.02
LIMS2-215ENST00000484252 TRIM52Q96A61 297 aa27.66■■■□□ 2.02
LIMS2-215ENST00000484252 MPHOSPH9Q99550 1183 aa27.62■■■□□ 2.01
LIMS2-215ENST00000484252 DAPK1P53355 1430 aa27.62■■■□□ 2.01
LIMS2-215ENST00000484252 DNMT1P26358 1616 aaKnown RBP27.61■■■□□ 2.01
LIMS2-215ENST00000484252 RAPGEF6Q8TEU7 1601 aa27.61■■■□□ 2.01
LIMS2-215ENST00000484252 NUP153P49790 1475 aaKnown RBP27.6■■■□□ 2.01
LIMS2-215ENST00000484252 GRIN2AQ12879 1464 aa27.6■■■□□ 2.01
LIMS2-215ENST00000484252 EIF4G3O43432 1585 aaKnown RBP27.6■■■□□ 2.01
LIMS2-215ENST00000484252 CDK11AQ9UQ88 783 aaPredicted RBP27.58■■■□□ 2.01
LIMS2-215ENST00000484252 ABCC5O15440 1437 aa27.55■■■□□ 2
LIMS2-215ENST00000484252 ERCC6Q03468 1493 aa27.53■■■□□ 2
LIMS2-215ENST00000484252 HSPA5P11021 654 aaKnown RBP27.52■■■□□ 2
LIMS2-215ENST00000484252 EIF4G2P78344 907 aaKnown RBP eCLIP27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 148.9 ms